Sed0027837 (gene) Chayote v1

Overview


Name	Sed0027837
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein L19
Location	LG08: 2474259 .. 2475106 (+)
RNA-Seq Expression	Sed0027837
Synteny	Sed0027837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCCCTCACCCTGCAGAGGCGGCTCGCCGCCACCAGTCTCGACTGTGGAAAACGTCGAGTATGGCTCGATCCCAACGAGACCCTCATCATATCCTTAGCCAATTCTAGTAAGCACAGCTAACTTCTCTAGTTTATCTCTTTGCTTCTTTTTGTTAAACTTGACCAATCATGAAATTAGAGTGAAGAAAAGAAAAGGTTTAGCCAACATGAATATTTCAATTATTGATTTTACCATATACAAATTTATACAAAGAGTGAACAATGACTTATTCTGTTTCAAGAAAGAATTTTGTACCTGATATTGACAATTCAGATAGCAAAATTTCTCTATAAAAGAAGAAAGCAACTTAACTAGAAACTTAATCGCTTGCAGGAATGAACATTAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGATGTCCAAGATCCACTCGAAATCTCGAGCTCAACAAACCCGTAAAGAAAAGGCGAGAGGATTACACTCCGGGTATGGAAAACGAAGAGGAACAAAGGAAGCGAGGTTACCCACAAAGCTGCTATGGGTGAGAAGAATGAGGGTCCTCAGAAGGTTACTGCACAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACGTTAGGGTGAAAGGAAACGTTTACAAAAACAAGCGTGCGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATCAGAAAAAACACTTTCTGTTCAGCTCGAGGCCAAGAGAGCAGCAACGAATAATAAAGCAACTACGGTGCGCGTTCTAAAAAAGAAAGATTACAGTGCCATTGCAGGCTCTGCCATTACAAACTCCTCATAA

mRNA sequence

ATGGTGTCCCTCACCCTGCAGAGGCGGCTCGCCGCCACCAGTCTCGACTGTGGAAAACGTCGAGTATGGCTCGATCCCAACGAGACCCTCATCATATCCTTAGCCAATTCTAGAATGAACATTAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGATGTCCAAGATCCACTCGAAATCTCGAGCTCAACAAACCCGTAAAGAAAAGGCGAGAGGATTACACTCCGGGTATGGAAAACGAAGAGGAACAAAGGAAGCGAGGTTACCCACAAAGCTGCTATGGGTGAGAAGAATGAGGGTCCTCAGAAGGTTACTGCACAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACGTTAGGGTGAAAGGAAACGTTTACAAAAACAAGCGTGCGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATCAGAAAAAACACTTTCTGTTCAGCTCGAGGCCAAGAGAGCAGCAACGAATAATAAAGCAACTACGGTGCGCGTTCTAAAAAAGAAAGATTACAGTGCCATTGCAGGCTCTGCCATTACAAACTCCTCATAA

Coding sequence (CDS)

ATGGTGTCCCTCACCCTGCAGAGGCGGCTCGCCGCCACCAGTCTCGACTGTGGAAAACGTCGAGTATGGCTCGATCCCAACGAGACCCTCATCATATCCTTAGCCAATTCTAGAATGAACATTAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGATGTCCAAGATCCACTCGAAATCTCGAGCTCAACAAACCCGTAAAGAAAAGGCGAGAGGATTACACTCCGGGTATGGAAAACGAAGAGGAACAAAGGAAGCGAGGTTACCCACAAAGCTGCTATGGGTGAGAAGAATGAGGGTCCTCAGAAGGTTACTGCACAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACGTTAGGGTGAAAGGAAACGTTTACAAAAACAAGCGTGCGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATCAGAAAAAACACTTTCTGTTCAGCTCGAGGCCAAGAGAGCAGCAACGAATAATAAAGCAACTACGGTGCGCGTTCTAAAAAAGAAAGATTACAGTGCCATTGCAGGCTCTGCCATTACAAACTCCTCATAA

Protein sequence

MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSKSRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIYHQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKDYSAIAGSAITNSS

Homology

[Close]

BLAST of Sed0027837 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-71
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDPNET  ISLANSRM+IRKLIKDGLIIKRM+ IHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
            R++Q+ + K+RG HSGYGKRRGTKEARLPTKLLW+RRMRVLRRLL KYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           HQMY RVKGNVYKNKR LME+IHKVK+E ASE+TLS Q+EAKRA   N   TV V+K+KD
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRA--RNSKATVSVVKQKD 180

Query: 181 YSAIAGS 188
           Y+AI GS
Sbjct: 181 YTAITGS 185

[Close]

BLAST of Sed0027837 vs. NCBI nr
Match: KAG7023328.1 (60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-71
Identity = 149/187 (79.68%), Postives = 166/187 (88.77%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDPNET  ISLANSRM+IRKLIKDG IIKR + IHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
            R++Q+ + K+RG HSGYGKRRGTKEARLPTKLLW+RRMRVLRRLL KYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           HQMY RVKGNVYKNKR LME+IHKVK+EKASE+TLS Q+EAKRA   N   TV V+K+KD
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRA--RNSKATVSVVKQKD 180

Query: 181 YSAIAGS 188
           Y+AI GS
Sbjct: 181 YTAITGS 185

[Close]

BLAST of Sed0027837 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 3.4e-71
Identity = 148/187 (79.14%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDPNET  ISLANSRM+IRKLIKDGLIIKR + IHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
            R++Q+R+ K+RG HSGYGKRRGTKEARLPTKLLW+RRMR+LRRLL KYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           H+MY RVKGNVYKNKR LME+IHKVK+EKASE+TLS Q+EAKRA   N   TV V+K+KD
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRA--RNSKATVSVVKQKD 180

Query: 181 YSAIAGS 188
           Y+A  GS
Sbjct: 181 YTATTGS 185

[Close]

BLAST of Sed0027837 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata])

HSP 1 Score: 278.1 bits (710), Expect = 5.8e-71
Identity = 148/187 (79.14%), Postives = 166/187 (88.77%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKR+VWLDPNET  ISLANSRM+IRKLIKDG IIKR + IHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
            R++Q+ + K+RG HSGYGKRRGTKEARLPTKLLW+RRMRVLRRLL KYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           HQMY RVKGNVYKNKR LME+IHKVK+EKASE+TLS Q+EAKRA   N   TV V+K+KD
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRA--RNSKATVSVVKQKD 180

Query: 181 YSAIAGS 188
           Y+AI GS
Sbjct: 181 YTAITGS 185

[Close]

BLAST of Sed0027837 vs. NCBI nr
Match: XP_038879968.1 (60S ribosomal protein L19-1-like [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 143/171 (83.63%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDP ET+ ISLANSRM+IRKLIKDGLIIKR++  HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SR+++    K+RG HSG GKRRGTKEARLPTKLLW+RRMRVLRRLL KYRECEKIDKHIY
Sbjct: 61  SRSRRRSDAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKAT 172
           HQMY+RVKGNVYKNKR LMESIHKVKAEKASEKTLS+QLEAKR A N+KAT
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKR-AINSKAT 170

[Close]

BLAST of Sed0027837 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-59
Identity = 123/174 (70.69%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL LQ+RLAA+ + CGK +VWLDPNE+  IS+ANSR NIRKL+KDG II++ +KIHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA++ +  K +G HSGYGKR+GT+EARLPTK+LW+RRMRVLRRLL KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVR 175
           H MY+RVKGNV+KNKR LMESIHK KAEKA EKTLS Q EAKRA   NKA+  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA--KNKASRER 172

[Close]

BLAST of Sed0027837 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 229.2 bits (583), Expect = 4.0e-59
Identity = 123/174 (70.69%), Postives = 146/174 (83.91%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL LQ+RLA++ L CGKR+VWLDPNE   IS+ANSR NIRKL+KDG II++ +KIHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA+Q    K +G HSGYGKR+GT+EARLPTK+LW+RRMRVLRRLL KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVR 175
           H MY++VKGNV+KNKR LMESIHK KAEKA EKTLS Q EAKRA   NKA+  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA--KNKASRER 172

[Close]

BLAST of Sed0027837 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-57
Identity = 117/180 (65.00%), Postives = 148/180 (82.22%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL +Q+RLAA+ + CGK +VWLDPNE+  IS+ANSR NIRKL+KDG II++ +KIHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA+   + K +G HSGYGKR+GT+EARLPTK+LW+RRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           H MY++VKGNV+KNKR LMESIHK+KAEKA EKTL+ Q EAKR    NKA+  R   +++
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKR--IKNKASRERKFARRE 178

[Close]

BLAST of Sed0027837 vs. ExPASy Swiss-Prot
Match: Q6P5L3 (60S ribosomal protein L19 OS=Danio rerio OX=7955 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.7e-47
Identity = 97/166 (58.43%), Postives = 128/166 (77.11%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           M  L LQ+RLA++ L CGK++VWLDPNET  I+ ANSR  IRKL+KDGLIIK+   +HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           +R ++    + +G H G GKR+GT  AR+P KL W+RRMR+LRRLL +YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAAT 167
           H +Y+R KGNV+KNKR LME IHK+KA+KA +K L+ Q EA+R  T
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKT 166

[Close]

BLAST of Sed0027837 vs. ExPASy Swiss-Prot
Match: P0DJ60 (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL19 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.0e-47
Identity = 99/164 (60.37%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL LQ+RLAA+ L CG++R+WLDPNE+  IS+ANSR +IRKLIKDGL++KR + IHS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA+   + K +G H+G GKR+GT+ AR+PTK+LW+RR RVLRRLL KYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRA 165
           H+ Y+  KGN+YKNK  L+E+IH  KA+K     L+ Q EA+RA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRA 164

[Close]

BLAST of Sed0027837 vs. ExPASy TrEMBL
Match: A0A6J1JJK9 (Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.6e-71
Identity = 148/187 (79.14%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDPNET  ISLANSRM+IRKLIKDGLIIKR + IHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
            R++Q+R+ K+RG HSGYGKRRGTKEARLPTKLLW+RRMR+LRRLL KYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           H+MY RVKGNVYKNKR LME+IHKVK+EKASE+TLS Q+EAKRA   N   TV V+K+KD
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRA--RNSKATVSVVKQKD 180

Query: 181 YSAIAGS 188
           Y+A  GS
Sbjct: 181 YTATTGS 185

[Close]

BLAST of Sed0027837 vs. ExPASy TrEMBL
Match: A0A6J1E0X8 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.8e-71
Identity = 148/187 (79.14%), Postives = 166/187 (88.77%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKR+VWLDPNET  ISLANSRM+IRKLIKDG IIKR + IHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
            R++Q+ + K+RG HSGYGKRRGTKEARLPTKLLW+RRMRVLRRLL KYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           HQMY RVKGNVYKNKR LME+IHKVK+EKASE+TLS Q+EAKRA   N   TV V+K+KD
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRA--RNSKATVSVVKQKD 180

Query: 181 YSAIAGS 188
           Y+AI GS
Sbjct: 181 YTAITGS 185

[Close]

BLAST of Sed0027837 vs. ExPASy TrEMBL
Match: A0A6J1C1I4 (Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.4e-67
Identity = 139/172 (80.81%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL LQ+RLAA+SL CGKRRVWLDPNE   +SLANSRM+IRKLIKDGLIIKR++KI SK
Sbjct: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           +R++QT + KARG HSGYGKRRGTKEARLPTKLLW+RRMRVLRRLL KYRECEKIDKHIY
Sbjct: 61  ARSRQTHEAKARGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATT 173
           HQMY+RVKGNVY+NKR LME+IHKV+AEKASE TL+VQ+EAKR A N+K TT
Sbjct: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKR-AINSKGTT 171

[Close]

BLAST of Sed0027837 vs. ExPASy TrEMBL
Match: A0A1S3BVU0 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.0e-65
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDPNET  ISLANSRM+IRKLIKDGLIIKR++  HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SR++Q  + K+RG HSG GKRRGTKEARLPTKLLW+RRMRVLRRLL KYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKA 171
           HQMY+RVKGNVYKNKR LMESIHKVK EKA EKTLS+Q+EAKR A N+KA
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKR-AINSKA 169

[Close]

BLAST of Sed0027837 vs. ExPASy TrEMBL
Match: A0A5A7UX03 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004560 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 137/170 (80.59%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSLTLQ+RLAA+SLDCGKRRVWLDPNET   SLANSRM+IRKLIKDGLIIKR++  HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SR++Q  + K+RG HSG GKRRGTKEARLPTKLLW+RRMRVLRRLL KYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKA 171
           HQMY+RVKGNVYKNKR LMESIHKVKAE+A EKTLS+Q+EAKR A N+KA
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKR-AINSKA 169

[Close]

BLAST of Sed0027837 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-60
Identity = 123/174 (70.69%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL LQ+RLAA+ + CGK +VWLDPNE+  IS+ANSR NIRKL+KDG II++ +KIHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA++ +  K +G HSGYGKR+GT+EARLPTK+LW+RRMRVLRRLL KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVR 175
           H MY+RVKGNV+KNKR LMESIHK KAEKA EKTLS Q EAKRA   NKA+  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA--KNKASRER 172

[Close]

BLAST of Sed0027837 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-60
Identity = 123/174 (70.69%), Postives = 146/174 (83.91%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL LQ+RLA++ L CGKR+VWLDPNE   IS+ANSR NIRKL+KDG II++ +KIHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA+Q    K +G HSGYGKR+GT+EARLPTK+LW+RRMRVLRRLL KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVR 175
           H MY++VKGNV+KNKR LMESIHK KAEKA EKTLS Q EAKRA   NKA+  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA--KNKASRER 172

[Close]

BLAST of Sed0027837 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-58
Identity = 117/180 (65.00%), Postives = 148/180 (82.22%), Query Frame = 0


Query: 1   MVSLTLQRRLAATSLDCGKRRVWLDPNETLIISLANSRMNIRKLIKDGLIIKRMSKIHSK 60
           MVSL +Q+RLAA+ + CGK +VWLDPNE+  IS+ANSR NIRKL+KDG II++ +KIHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECEKIDKHIY 120
           SRA+   + K +G HSGYGKR+GT+EARLPTK+LW+RRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYVRVKGNVYKNKRALMESIHKVKAEKASEKTLSVQLEAKRAATNNKATTVRVLKKKD 180
           H MY++VKGNV+KNKR LMESIHK+KAEKA EKTL+ Q EAKR    NKA+  R   +++
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKR--IKNKASRERKFARRE 178

[Close]

BLAST of Sed0027837 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 54  MSKIHSKSRAQQTRKEKARGLHSGYGKRRGTKEARLPTKLLWVRRMRVLRRLLHKYRECE 113
           M  IH  SR++  RK +    H+GYGK   T EA         RR+++L+RLL K+   +
Sbjct: 1   MVSIHFHSRSRARRKCR----HTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNK 60

Query: 114 KIDKHI-YHQMYVRVKGNVYKNKRALMESIHKVKAEK---ASEKTLSVQLEAKRAAT 167
           KIDK + YH M+++VKG VYKNK  LMES+HK   E+    SE  L+++ E ++ A+
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTAS 111

The following BLAST results are available for this feature:

BLAST of Sed0027837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515875.1	1.2e-71	80.21	60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]	[more]
KAG7023328.1	2.0e-71	79.68	60S ribosomal protein L19-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022988450.1	3.4e-71	79.14	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]
XP_022921592.1	5.8e-71	79.14	60S ribosomal protein L19-3-like [Cucurbita moschata]	[more]
XP_038879968.1	2.3e-67	83.63	60S ribosomal protein L19-1-like [Benincasa hispida]	[more]

BLAST of Sed0027837 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRX2	3.1e-59	70.69	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
P49693	4.0e-59	70.69	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
Q9LUQ6	2.9e-57	65.00	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
Q6P5L3	2.7e-47	58.43	60S ribosomal protein L19 OS=Danio rerio OX=7955 GN=rpl19 PE=2 SV=1	[more]
P0DJ60	6.0e-47	60.37	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN...	[more]

BLAST of Sed0027837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJK9	1.6e-71	79.14	Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1	[more]
A0A6J1E0X8	2.8e-71	79.14	Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1	[more]
A0A6J1C1I4	5.4e-67	80.81	Ribosomal protein L19 OS=Momordica charantia OX=3673 GN=LOC111007130 PE=3 SV=1	[more]
A0A1S3BVU0	3.0e-65	81.18	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
A0A5A7UX03	1.1e-64	80.59	Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of Sed0027837 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02780.1	2.2e-60	70.69	Ribosomal protein L19e family protein	[more]
AT4G02230.1	2.9e-60	70.69	Ribosomal protein L19e family protein	[more]
AT3G16780.1	2.1e-58	65.00	Ribosomal protein L19e family protein	[more]
AT4G16030.1	2.7e-10	41.88	Ribosomal protein L19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 8.4E-71 score: 251.2
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 e-value: 2.5E-54 score: 183.2
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	1.10.1650.10		coord: 2..56 e-value: 1.6E-23 score: 84.2
None	No IPR available	GENE3D	1.10.1200.240		coord: 57..188 e-value: 1.9E-44 score: 153.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..82
None	No IPR available	PANTHER	PTHR10722:SF5	60S RIBOSOMAL PROTEIN L19-2	coord: 1..180
IPR039547	60S ribosomal protein L19	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..180
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	48140	Ribosomal protein L19 (L19e)	coord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027837.1	Sed0027837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome