Sed0023448 (gene) Chayote v1

Overview
NameSed0023448
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG08: 796229 .. 796810 (+)
RNA-Seq ExpressionSed0023448
SyntenySed0023448
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAAAAATTGGCGACCACCAAGGGACCATATATTGAAAATCAATACTGATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGGGGTGATTGTGCGTAACAAGAAGGGGGAGGTAATGTTCTCTTCTTGTTGAACGATTACAGGAGTTGTGGATTCAGAAATTGCCGAAGCTTTAGCAGTTCAAGAGGGAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCTCGTGTTGCTGCTTTTCTTAAAAAGTGTGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGTTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATTCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAAAGGTTTTGAATGCTAGTTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATACTTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAGGGAGTCTCCTGCCTTAATCTTTTGTTACTGTGTACTTCAAAAAAAAAAAAAGTTAAATGTTAA

mRNA sequence

ATGGAAAGGAAAAATTGGCGACCACCAAGGGACCATATATTGAAAATCAATACTGATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGGGGTGATTGTGCGAGTTGTGGATTCAGAAATTGCCGAAGCTTTAGCAGTTCAAGAGGGAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCTCGTGTTGCTGCTTTTCTTAAAAAGTGTGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGTTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATTCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAAAGGTTTTGAATGCTAGTTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATACTTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAGGGAGTCTCCTGCCTTAATCTTTTGTTACTGTGTACTTCAAAAAAAAAAAAAGTTAAATGTTAA

Coding sequence (CDS)

ATGGAAAGGAAAAATTGGCGACCACCAAGGGACCATATATTGAAAATCAATACTGATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGGGGTGATTGTGCGAGTTGTGGATTCAGAAATTGCCGAAGCTTTAGCAGTTCAAGAGGGAGTAGCAATGGCTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACGGATGCATCTCGTGTTGCTGCTTTTCTTAAAAAGTGTGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGACCTTAGTTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATTCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAAAGGTTTTGAATGCTAGTTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATACTTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAGGGAGTCTCCTGCCTTAATCTTTTGTTACTGTGTACTTCAAAAAAAAAAAAAGTTAAATGTTAA

Protein sequence

MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEIAEALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMTNSLVQEREGVSCLNLLLLCTSKKKKVKC
Homology
BLAST of Sed0023448 vs. NCBI nr
Match: XP_023904177.1 (uncharacterized protein LOC112015942 [Quercus suber])

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-14
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 0

Query: 6   WRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEALAVQ 65
           WRPP     K+N DA I+  + R G G ++R                V  S+ AE LA +
Sbjct: 350 WRPPAHPFFKMNFDAAIFNDSGRSGFGAVIRNELGEVMAALSAIGPSVSSSDEAETLACR 409

Query: 66  EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 125
           + +  AVD GF E+ +E D+  V   L       + VG ++ +   L++ L +VSFSW  
Sbjct: 410 KAMEFAVDAGFNELIIEGDSINVIKALSSSSPDLSVVGNVVADIKCLISGLRRVSFSWVN 469

Query: 126 RDSNGLAHHLARMAAEKVLNASWMEDVP 138
           RD N +AH LA+ A     +  WMED P
Sbjct: 470 RDCNRVAHALAKFANSLEEDLYWMEDAP 497

BLAST of Sed0023448 vs. NCBI nr
Match: TXG57364.1 (hypothetical protein EZV62_018677 [Acer yangbiense])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = 0

Query: 1   MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAE 60
           +ER  W+ P   + K+NTDA +     + G G+I+R                 V  + AE
Sbjct: 134 IERPKWQCPPSGMFKLNTDAALLATQMKVGFGIIIRDDTGAVMGSSIQPALATVTPQAAE 193

Query: 61  ALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLV-AALTKV 120
           A+A+  G+  AV+ GF  + VE+DA  V   + K   S  E G +I + L+L+ ++L  +
Sbjct: 194 AMAIYRGITFAVETGFLPLVVESDAKGVVEMINKGVPSDAEYGVVIADILSLINSSLVPI 253

Query: 121 SFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP 138
           S ++ +R+SNG+AH LA +AA    +  WM   P
Sbjct: 254 SVTFSSRNSNGVAHELANLAARATCSYFWMYSCP 287

BLAST of Sed0023448 vs. NCBI nr
Match: XP_023880912.1 (uncharacterized protein LOC111993298 [Quercus suber])

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-12
Identity = 53/164 (32.32%), Postives = 75/164 (45.73%), Query Frame = 0

Query: 2    ERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAEA 61
            E   W PP D + K N D  ++ ++   GIGVIVR                +   E+ EA
Sbjct: 998  ENTKWLPPGDGLFKANYDGAVFAESEEAGIGVIVRDSKGDVLAALAEKIPYLGSVEVLEA 1057

Query: 62   LAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSF 121
            LA +      V+LG    E E D+  V   LK    + + +G II +TL++V +L   SF
Sbjct: 1058 LAARRAAKFVVELGLTAAEFEGDSEVVWTALKVANEAHSAMGVIIKDTLSIVGSLRTFSF 1117

Query: 122  SWCARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMT 150
            S   R  N +AH LA+ A        WME VP ++    I + T
Sbjct: 1118 SHTRRQGNCVAHALAKRAIVSFPLLVWMEHVPTDISHVVISDFT 1161

BLAST of Sed0023448 vs. NCBI nr
Match: XP_023872391.1 (uncharacterized protein LOC111985003 [Quercus suber])

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-12
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 0

Query: 6   WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEI----------------AEALAVQ 65
           W PPR    KIN D  ++ ++  CG+GV++R  +  +                 EALAVQ
Sbjct: 67  WTPPRKGWYKINLDGAVFNESGSCGVGVVIRNENGCLMGAMSKRCKLPLKALETEALAVQ 126

Query: 66  EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 125
           EG+ +A DLG +++E+E+D+  V + L K +     +  +I+     +        +   
Sbjct: 127 EGIGLAWDLGLKKIEIESDSQLVVSALTKADSVPWSISKVIEGVRLSLRCFKAWKVTHTC 186

Query: 126 RDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYILEMTN 151
           R++N  AH LAR A+       W+ED+P  + E  + +++N
Sbjct: 187 REANAAAHQLARKASAVFDCNIWVEDIPPCIVEQVLYDVSN 227

BLAST of Sed0023448 vs. NCBI nr
Match: XP_021744937.1 (uncharacterized protein LOC110710901 [Chenopodium quinoa])

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-12
Identity = 49/151 (32.45%), Postives = 79/151 (52.32%), Query Frame = 0

Query: 6   WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQ 65
           W+PP + ++K+N+DA ++  +   G G ++R     VV S           ++ EALA++
Sbjct: 150 WKPPLEEVIKVNSDAAVFASSG-VGFGGVMRDNVGDVVASTCFKLEGKFEVDVVEALAMR 209

Query: 66  EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 125
             + +A++ GFR V +ETD  ++   L KC    T  G I+ + L L  A   VSFS+  
Sbjct: 210 HALNIAIESGFRSVCLETDCLKLHNHLVKCMTPSTAFGMIVKDILQLALACHHVSFSFVR 269

Query: 126 RDSNGLAHHLARMAAEKVLNASWMEDVPENL 141
           R  N +AH LA++         WMED P ++
Sbjct: 270 RSDNRVAHELAKLCISFNELRVWMEDFPSDV 299

BLAST of Sed0023448 vs. ExPASy TrEMBL
Match: A0A2N9EK22 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2801 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 0

Query: 6    WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQ 65
            W+PP  H  KIN D  ++ + N  GIGV+VR     V+ S           E  EA A +
Sbjct: 1219 WQPPSRHNFKINYDGAVFKETNEAGIGVVVRNKAGHVMASLFQKVRYPQSVESIEAWAAK 1278

Query: 66   EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 125
              V    ++G +E E E D+  + A L       T  G +I +  +L  AL    F+   
Sbjct: 1279 RAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHALDSYCFTHVK 1338

Query: 126  RDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI 146
            R  NGLAH LARMA    +   WMEDVP  L++ Y+
Sbjct: 1339 RQGNGLAHALARMAKHTDILEVWMEDVPPPLQQLYL 1374

BLAST of Sed0023448 vs. ExPASy TrEMBL
Match: A0A2N9GYK3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32597 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 0

Query: 6    WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQ 65
            W+PP  H  KIN D  ++ + N  GIGV+VR     V+ S           E  EA A +
Sbjct: 1459 WQPPSRHNFKINYDGAVFKETNEAGIGVVVRNKAGHVMASLVQKVRYPQSVENIEAWAAK 1518

Query: 66   EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 125
              V    ++G +E E E D+  + A L       T  G +I +  +L  AL    F+   
Sbjct: 1519 RAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHALDSYCFTHVK 1578

Query: 126  RDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI 146
            R  NGLAH LARMA    +   WMEDVP  L++ Y+
Sbjct: 1579 RQGNGLAHALARMAKHTDILEVWMEDVPPPLQQLYL 1614

BLAST of Sed0023448 vs. ExPASy TrEMBL
Match: A0A5C7HKD5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018677 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.4e-14
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = 0

Query: 1   MERKNWRPPRDHILKINTDATIYLQANRCGIGVIVR----------------VVDSEIAE 60
           +ER  W+ P   + K+NTDA +     + G G+I+R                 V  + AE
Sbjct: 134 IERPKWQCPPSGMFKLNTDAALLATQMKVGFGIIIRDDTGAVMGSSIQPALATVTPQAAE 193

Query: 61  ALAVQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLV-AALTKV 120
           A+A+  G+  AV+ GF  + VE+DA  V   + K   S  E G +I + L+L+ ++L  +
Sbjct: 194 AMAIYRGITFAVETGFLPLVVESDAKGVVEMINKGVPSDAEYGVVIADILSLINSSLVPI 253

Query: 121 SFSWCARDSNGLAHHLARMAAEKVLNASWMEDVP 138
           S ++ +R+SNG+AH LA +AA    +  WM   P
Sbjct: 254 SVTFSSRNSNGVAHELANLAARATCSYFWMYSCP 287

BLAST of Sed0023448 vs. ExPASy TrEMBL
Match: A0A2N9EQW7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4942 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 53/153 (34.64%), Postives = 73/153 (47.71%), Query Frame = 0

Query: 6    WRPPRDHILKINTDATIYLQANRCGIGVIVR-----VVDS-----------EIAEALAVQ 65
            W+PP  H  KIN D  ++ + N  GIG++VR     V+ S           E  EA A +
Sbjct: 1046 WQPPSRHNFKINYDGAVFKETNEAGIGIVVRNKAGHVMASLVQKVRYPQSVENIEAWAAK 1105

Query: 66   EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 125
              V    ++G +E E E D+  + A L       T  G +I +  +L  AL    F+   
Sbjct: 1106 RAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHALDSYCFTHVK 1165

Query: 126  RDSNGLAHHLARMAAEKVLNASWMEDVPENLRE 143
            R  NGLAH LARMA    +   WMEDVP  L++
Sbjct: 1166 RQGNGLAHALARMAKHTDILEVWMEDVPPPLQQ 1198

BLAST of Sed0023448 vs. ExPASy TrEMBL
Match: A0A2N9G3I8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21623 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 51/158 (32.28%), Postives = 72/158 (45.57%), Query Frame = 0

Query: 6    WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEIAEAL------------------A 65
            W+PP  H  KIN D  ++ + N  GIGV+VR     +  +L                  A
Sbjct: 1647 WQPPSRHNFKINYDGAVFKETNEAGIGVVVRNKAGHVMASLVQKVRYPQSVENIEDKTWA 1706

Query: 66   VQEGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSW 125
             +  V    ++G +E E E D+  + A L       T  G +I +  +L  AL    F+ 
Sbjct: 1707 AKRAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHALDSYCFTH 1766

Query: 126  CARDSNGLAHHLARMAAEKVLNASWMEDVPENLREDYI 146
              R  NGLAH LARMA    +   WMEDVP  L++ Y+
Sbjct: 1767 VKRQGNGLAHALARMAKHTDILEVWMEDVPPPLQQLYL 1804

BLAST of Sed0023448 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.7e-04
Identity = 37/132 (28.03%), Postives = 55/132 (41.67%), Query Frame = 0

Query: 6   WRPPRDHILKINTDATIYLQANRCGIGVIVRVVDSEI----------------AEALAVQ 65
           WRPP    +K NTDAT      RCGIG ++R    E+                AE  A++
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479

Query: 66  EGVAMAVDLGFREVEVETDASRVAAFLKKCEFSRTEVGFIIDETLTLVAALTKVSFSWCA 122
             V       +  V  E+D+  +   L   E     +   I +   L++  T+V F +  
Sbjct: 480 WAVLSLSRFQYNYVIFESDSQVLIEILNNDEI-WPSLKPTIQDLQRLLSQFTEVKFVFIP 539

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023904177.17.8e-1434.46uncharacterized protein LOC112015942 [Quercus suber][more]
TXG57364.11.7e-1332.47hypothetical protein EZV62_018677 [Acer yangbiense][more]
XP_023880912.12.5e-1232.32uncharacterized protein LOC111993298 [Quercus suber][more]
XP_023872391.13.3e-1228.57uncharacterized protein LOC111985003 [Quercus suber][more]
XP_021744937.15.6e-1232.45uncharacterized protein LOC110710901 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9EK221.7e-1435.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2801 PE=4 SV=1[more]
A0A2N9GYK32.2e-1435.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32597 PE=4 SV=1[more]
A0A5C7HKD58.4e-1432.47Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_018677 PE=4 SV=1[more]
A0A2N9EQW71.1e-1334.64Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9G3I81.4e-1332.28Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
AT4G29090.12.7e-0428.03Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 27..123
e-value: 1.5E-15
score: 57.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 14..130
e-value: 6.4E-10
score: 41.1
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 41..137
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 16..121
e-value: 9.94874E-15
score: 65.028
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 14..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023448.1Sed0023448.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity