Sed0021380 (gene) Chayote v1

Overview


Name	Sed0021380
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 9439457 .. 9439939 (-)
RNA-Seq Expression	Sed0021380
Synteny	Sed0021380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTTATCGCAACGAGCTACTTTGAATTGGCGGATGAATTGGTAAAGGGTTATTTTCAACAAAGGGTGGTTAAGCGAGCAGAGAGGGAAATTAAGAAGAAGTCTATGGAGAAAACAAAGGAATCGTTAGAGGAAGATCCCAGGGAAGGAGAACCATGCGTTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAAAAGAGTTAGGAAAGGCGAAACAACAACCTCCAAAGTTTTGCAATGTAAGAATCCAATCCATGAAAGTAAGTGTGGTACTGGAAACTCCAAGCATCAAGATTAGAGCAGTAAAAGAAGGCATAATCGTTGCATCTATCCATGGAGAGGGCCATTATTTATCACTAATGAGTAAAGGATTCGAGCACAAACAAGGAATGAAGGGAATGTCAAAGAAAACCGTTAAGAGAATTGATGACTTGGGATGGACAACGTATTTCAAACTAGATAAGAAGAAGGAAACTTGA

mRNA sequence

ATGATGTTTATCGCAACGAGCTACTTTGAATTGGCGGATGAATTGGTAAAGGGTTATTTTCAACAAAGGGTGGTTAAGCGAGCAGAGAGGGAAATTAAGAAGAAGTCTATGGAGAAAACAAAGGAATCGTTAGAGGAAGATCCCAGGGAAGGAGAACCATGCGTTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAAAAGAGTTAGGAAAGGCGAAACAACAACCTCCAAAGTTTTGCAATGTAAGAATCCAATCCATGAAAGTAAGTGTGGTACTGGAAACTCCAAGCATCAAGATTAGAGCAGTAAAAGAAGGCATAATCGTTGCATCTATCCATGGAGAGGGCCATTATTTATCACTAATGAGTAAAGGATTCGAGCACAAACAAGGAATGAAGGGAATGTCAAAGAAAACCGTTAAGAGAATTGATGACTTGGGATGGACAACGTATTTCAAACTAGATAAGAAGAAGGAAACTTGA

Coding sequence (CDS)

ATGATGTTTATCGCAACGAGCTACTTTGAATTGGCGGATGAATTGGTAAAGGGTTATTTTCAACAAAGGGTGGTTAAGCGAGCAGAGAGGGAAATTAAGAAGAAGTCTATGGAGAAAACAAAGGAATCGTTAGAGGAAGATCCCAGGGAAGGAGAACCATGCGTTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAAAAGAGTTAGGAAAGGCGAAACAACAACCTCCAAAGTTTTGCAATGTAAGAATCCAATCCATGAAAGTAAGTGTGGTACTGGAAACTCCAAGCATCAAGATTAGAGCAGTAAAAGAAGGCATAATCGTTGCATCTATCCATGGAGAGGGCCATTATTTATCACTAATGAGTAAAGGATTCGAGCACAAACAAGGAATGAAGGGAATGTCAAAGAAAACCGTTAAGAGAATTGATGACTTGGGATGGACAACGTATTTCAAACTAGATAAGAAGAAGGAAACTTGA

Protein sequence

MMFIATSYFELADELVKGYFQQRVVKRAEREIKKKSMEKTKESLEEDPREGEPCVEEEEEEEEEEEKELGKAKQQPPKFCNVRIQSMKVSVVLETPSIKIRAVKEGIIVASIHGEGHYLSLMSKGFEHKQGMKGMSKKTVKRIDDLGWTTYFKLDKKKET

Homology

The following BLAST results are available for this feature:

BLAST of Sed0021380 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0021380 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0021380 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0021380 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..47
None	No IPR available	COILS	Coil	Coil	coord: 55..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0021380.1	Sed0021380.1	mRNA