Sed0014475 (gene) Chayote v1

Overview


Name	Sed0014475
Type	gene
Organism	Sechium edule (Chayote v1)
Description	THO complex subunit 3
Location	LG08: 40132760 .. 40135234 (+)
RNA-Seq Expression	Sed0014475
Synteny	Sed0014475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATCAGCGTCGTCGATTTTCAAGAATCTTGAGAGCAGGGAGTATCAGGGTCACAAGAAGAAGGTTTTCTTTTTTTTTGTTGTTATCATCATAAATCTGTTTCTCCATTTCATTCCGCGTCTTCAATCAAATTCCACTTTTTTGAACTGCGGAAGGTACATTCTGTGGCATGGAATTGCACGGGCTTGAAGGTCGCTTCCGGCTCCGTCGATCAAACCGCTCGAGTTTGGCATATTGACCCTCACGGACATGTAATCTTCTTCTTCTTCTTCTTCTCAAATCCCTTTTTAGGGTTTCTCTTACTTCCCCGTGACCTTTTCTTCCAGGGCAAGCTCAAGGACGTTGAGTTGAAAGGACACACCGACAGTGTAGATCAGCTCTGTTGGGACCCTAAACATTCTGATCTTATAGCCACTGCCTCTGGGGATAAGACAGTTCGCCTCTGGGATGCTCGTAGTACGTCTTTTCTGCATTTTAACTCTTATCTAATTCAACTTTACCCTTTGCCTCTCCATTTCTCTCATTTTCTTCCCTAGATGCCAAATGCTCCCACCAAACGGAGCTCAGTGGGGAGAATATCAACATCACCTACAAACCCGATGGCACGCACATAGCCGTTGGGAATCGGGTATGCTATGCTATGCTATGCTCCACCTGTTTCATTACTTCACCCCTCACTTTTTCCTCGCATCCTCCTCTTGCAGGATGATGAACTCACTATCCTCGATGTTAGAAAGTTTAAGCCAATTCACAAGAGCAAGTTCAATTACGAGGTAATCTTCATCTACAATAAATACAACCATGCCATGTGTGTGATTGTTCACTTCTCTAGGATTTATTATCTTCCGTGCTTTCCGGCAACCAAATGTAGTAGGATTAACTTTACCTAAATGTCTTATGTCCTTCGTCGAGTTGAGTTGCATGCAATGCAAGCAACTGTGCACCCTCACACAGTCACAAATATCTATAAATTGCTTTGACATGTTGATGTGGGTGTTCATGTTCAAACATTTCAAATTATAGTACAGCCTATCTTTGCTCTGTTCATGAAATCCCTTCATACTTCTCGCTATCAATGTGTATAGGAGGAGACATGCCCATAGTTTGATCAAATATGTACCCTTCATCAGGTTCATTAGTAACTAGTTCAAGCGGTAATTTATAGTCGTGTAATTAAGTCTAGTGGATAGGGGAGAGATGCAGAACTTTCTAATCAACACTGAAGCTGTAATGCTGTATTCTCAATACTCTTGACATCTAGCGTATTCTATTCCATCAACCCCTTTTAATATCTACCTTCTTCCTTTACCATTTTTTTCTTGGATTTCTTTGTTTTATTTGCTATATTGAAATGATTTTTTGTAATCTTTTCCAGGTGAATGAAATTTCTTGGAACATGACTGGGGAGATGTTTTTTCTAACAACTGGAAATGGTGACCCATCTATAGCAACCACCACTTTTTAATGAAATGTCTGGGGAGATATTTTTAATTTCTCTCTGTTGAATAAAATTTCATGTCTATTTCTTGTGCTCAGGTACTGTTGAAGTACTGGAAAACCCGTCCCTTCGACCAATAGAAACTCTTATGGCTCATACAGCCGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGAGTGAGTTTCAAAGTTGACCCTCGATTGAATCTTTTATGATAAAAGAACTGTGTACAACTCCTAGTCCTGATTTCTTATGATAAAAACACTGTTTTCAATCTTTCAATTGCTTGTTTCGATCATTGAGAAAACTACTTCTGCAATTAGCCATGGGGAAAGATAAATGAATTCCATGTTACATCATAGGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGTGTGCGTACGTTTACAAGACTCGAGTAAGTTTTTTGTTTGTTTTATTGATTATGTTTCCTTCTTGGGTTAAATTCGTAAACTGAGTGATATATTTTCTTGTCATTCTGTTACTTAGATGGCCCGTCCGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGTGAGGATTTGTTCATTGATATAGTAAGCATTCCAGCGCCTCTCTGTTTTCCATTCTATGAAGGCATAGAATCTACCCCACCTTTTATTTGACTGATGTGAGGATGAGTGGCAGAACTTGTTCATGAATAATAGTTTTTTTCTTTTGCATACAGTCCAATGTTCAAACGGGACGAACAGTTCATCAGATTCCTTGTCGGGCTGCGATGAATAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTTTATCTGTGCATTGATATTTTCCACTGATATTTAGGTTTTACTTTAAAGACTTAACAAGTGCTATCTTTATTTTCTCTTTGCAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGA

mRNA sequence

ATGGAGGAATCAGCGTCGTCGATTTTCAAGAATCTTGAGAGCAGGGAGTATCAGGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCTTGAAGGTCGCTTCCGGCTCCGTCGATCAAACCGCTCGAGTTTGGCATATTGACCCTCACGGACATGGCAAGCTCAAGGACGTTGAGTTGAAAGGACACACCGACAGTGTAGATCAGCTCTGTTGGGACCCTAAACATTCTGATCTTATAGCCACTGCCTCTGGGGATAAGACAGTTCGCCTCTGGGATGCTCGTAATGCCAAATGCTCCCACCAAACGGAGCTCAGTGGGGAGAATATCAACATCACCTACAAACCCGATGGCACGCACATAGCCGTTGGGAATCGGGATGATGAACTCACTATCCTCGATGTTAGAAAGTTTAAGCCAATTCACAAGAGCAAGTTCAATTACGAGGTGAATGAAATTTCTTGGAACATGACTGGGGAGATGTTTTTTCTAACAACTGGAAATGGTACTGTTGAAGTACTGGAAAACCCGTCCCTTCGACCAATAGAAACTCTTATGGCTCATACAGCCGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGAGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGTGTGCGTACGTTTACAAGACTCGAATGGCCCGTCCGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGTGAGGATTTGTTCATTGATATATCCAATGTTCAAACGGGACGAACAGTTCATCAGATTCCTTGTCGGGCTGCGATGAATAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGA

Coding sequence (CDS)

ATGGAGGAATCAGCGTCGTCGATTTTCAAGAATCTTGAGAGCAGGGAGTATCAGGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACGGGCTTGAAGGTCGCTTCCGGCTCCGTCGATCAAACCGCTCGAGTTTGGCATATTGACCCTCACGGACATGGCAAGCTCAAGGACGTTGAGTTGAAAGGACACACCGACAGTGTAGATCAGCTCTGTTGGGACCCTAAACATTCTGATCTTATAGCCACTGCCTCTGGGGATAAGACAGTTCGCCTCTGGGATGCTCGTAATGCCAAATGCTCCCACCAAACGGAGCTCAGTGGGGAGAATATCAACATCACCTACAAACCCGATGGCACGCACATAGCCGTTGGGAATCGGGATGATGAACTCACTATCCTCGATGTTAGAAAGTTTAAGCCAATTCACAAGAGCAAGTTCAATTACGAGGTGAATGAAATTTCTTGGAACATGACTGGGGAGATGTTTTTTCTAACAACTGGAAATGGTACTGTTGAAGTACTGGAAAACCCGTCCCTTCGACCAATAGAAACTCTTATGGCTCATACAGCCGGTTGTTACTGCATTGCAATTGACCCAGTTGGAGAGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGTGTGCGTACGTTTACAAGACTCGAATGGCCCGTCCGAACAATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCCAGTGAGGATTTGTTCATTGATATATCCAATGTTCAAACGGGACGAACAGTTCATCAGATTCCTTGTCGGGCTGCGATGAATAGCGTGGAGTGGAATCCAAAACACAATTTACTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGA

Protein sequence

MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFESA

Homology

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BLAST of Sed0014475 vs. NCBI nr
Match: XP_038905145.1 (THO complex subunit 3 [Benincasa hispida])

HSP 1 Score: 627.1 bits (1616), Expect = 8.3e-176
Identity = 298/315 (94.60%), Postives = 305/315 (96.83%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEESA  IFKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESA-PIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFESA 316
           QADEGIFRIFGFE+A
Sbjct: 301 QADEGIFRIFGFETA 314

[Close]

BLAST of Sed0014475 vs. NCBI nr
Match: XP_004149572.1 (THO complex subunit 3 [Cucumis sativus] >XP_008449067.1 PREDICTED: THO complex subunit 3 [Cucumis melo] >KGN56047.1 hypothetical protein Csa_011347 [Cucumis sativus])

HSP 1 Score: 624.8 bits (1610), Expect = 4.1e-175
Identity = 296/314 (94.27%), Postives = 304/314 (96.82%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEESA + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESAQA-FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFES 315
           QADEGIFRIFGFES
Sbjct: 301 QADEGIFRIFGFES 313

[Close]

BLAST of Sed0014475 vs. NCBI nr
Match: XP_022946738.1 (THO complex subunit 3 [Cucurbita moschata] >XP_023005479.1 THO complex subunit 3 [Cucurbita maxima] >XP_023540495.1 THO complex subunit 3 [Cucurbita pepo subsp. pepo] >KAG6596748.1 THO complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028285.1 THO complex subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 620.5 bits (1599), Expect = 7.7e-174
Identity = 294/315 (93.33%), Postives = 304/315 (96.51%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEES  + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESTPA-FKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFESA 316
           QADEGIFRIFGFESA
Sbjct: 301 QADEGIFRIFGFESA 314

[Close]

BLAST of Sed0014475 vs. NCBI nr
Match: XP_022155009.1 (THO complex subunit 3 isoform X2 [Momordica charantia])

HSP 1 Score: 619.0 bits (1595), Expect = 2.2e-173
Identity = 290/313 (92.65%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 3   ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE 62
           E A+  FKNL+SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVE
Sbjct: 2   EEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVE 61

Query: 63  LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGT 122
           LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+ KCS Q ELSGENINITYKPDGT
Sbjct: 62  LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGT 121

Query: 123 HIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSL 182
           H+AVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSL
Sbjct: 122 HVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSL 181

Query: 183 RPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISF 242
           RP+ETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISF
Sbjct: 182 RPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISF 241

Query: 243 NHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA 302
           N+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA
Sbjct: 242 NYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA 301

Query: 303 DEGIFRIFGFESA 316
           DEGIFRIFGFESA
Sbjct: 302 DEGIFRIFGFESA 314

[Close]

BLAST of Sed0014475 vs. NCBI nr
Match: XP_030446900.1 (THO complex subunit 3 [Syzygium oleosum] >XP_030446901.1 THO complex subunit 3 [Syzygium oleosum])

HSP 1 Score: 610.9 bits (1574), Expect = 6.1e-171
Identity = 286/317 (90.22%), Postives = 303/317 (95.58%), Query Frame = 0


Query: 2   EESASSI---FKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKL 61
           EE A+++   +KNL SREYQGHKKKVHSVAWNC G K+ASGSVDQTARVWHI+PHGHGK+
Sbjct: 8   EEEAAAVAIPYKNLHSREYQGHKKKVHSVAWNCAGTKLASGSVDQTARVWHIEPHGHGKV 67

Query: 62  KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYK 121
           KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+ KCS Q ELSGENINITYK
Sbjct: 68  KDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYK 127

Query: 122 PDGTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLE 181
           PDGTH+AVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNM+GEMFFLTTGNGTVEVL 
Sbjct: 128 PDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGEMFFLTTGNGTVEVLA 187

Query: 182 NPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVR 241
            PSLRPI+TLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDIS+MLCVRTFT+LEWPVR
Sbjct: 188 YPSLRPIDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 247

Query: 242 TISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN 301
           TISFNHTG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN
Sbjct: 248 TISFNHTGDYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 307

Query: 302 KYQADEGIFRIFGFESA 316
           KYQADEG+FRIFGFESA
Sbjct: 308 KYQADEGVFRIFGFESA 324

[Close]

BLAST of Sed0014475 vs. ExPASy Swiss-Prot
Match: Q9FKT5 (THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 8.6e-160
Identity = 261/314 (83.12%), Postives = 288/314 (91.72%), Query Frame = 0


Query: 3   ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE 62
           E  +  FK+L SREYQGHKKKVHSVAWN  G K+ASGSVDQTAR+W+I+PHGH K KD+E
Sbjct: 2   EETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLE 61

Query: 63  LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGT 122
           LKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR+ KC+ Q ELSGENINITYKPDGT
Sbjct: 62  LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDGT 121

Query: 123 HIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSL 182
           H+AVGNRDDELTILDVRKFKP+H+ KFNYEVNEI+WNM G+ FFLTTG GTVEVL  PSL
Sbjct: 122 HVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSL 181

Query: 183 RPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISF 242
           +P++TL AHTAGCYCIAIDP G YFAVGSADSLVSLWDIS MLC+RTFT+LEWPVRTISF
Sbjct: 182 KPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISF 241

Query: 243 NHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQ 302
           N++GEYIASASEDLFIDI+NVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY 
Sbjct: 242 NYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYN 301

Query: 303 ADEGIFRIFGFESA 316
            DEG+FRIFGFES+
Sbjct: 302 TDEGVFRIFGFESS 315

[Close]

BLAST of Sed0014475 vs. ExPASy Swiss-Prot
Match: Q29RH4 (THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-90
Identity = 152/302 (50.33%), Postives = 212/302 (70.20%), Query Frame = 0


Query: 13  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQ 72
           ++RE+  H  KVHSVAW+C G ++ASGS D+TA V+ ++      +K+   +GH DSVDQ
Sbjct: 47  KTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQ 106

Query: 73  LCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGTHIAVGNRDDE 132
           LCW P + DL  TASGDKT+R+WD R  KC       GENINI + PDG  IAVGN+DD 
Sbjct: 107 LCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDV 166

Query: 133 LTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHT 192
           +T +D +  +   + +F +EVNEISWN    MFFLT GNG + +L  P L+P++++ AH 
Sbjct: 167 VTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHP 226

Query: 193 AGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA 252
           + C CI  DP+G+YFA GSAD+LVSLWD+ +++CVR F+RL+WPVRT+SF+H G+ +ASA
Sbjct: 227 SNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASA 286

Query: 253 SEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI 312
           SED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++
Sbjct: 287 SEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKL 346

[Close]

BLAST of Sed0014475 vs. ExPASy Swiss-Prot
Match: Q8VE80 (THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-90
Identity = 152/302 (50.33%), Postives = 212/302 (70.20%), Query Frame = 0


Query: 13  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQ 72
           ++RE+  H  KVHSVAW+C G ++ASGS D+TA V+ ++      +K+   +GH DSVDQ
Sbjct: 47  KTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQ 106

Query: 73  LCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGTHIAVGNRDDE 132
           LCW P + DL  TASGDKT+R+WD R  KC       GENINI + PDG  IAVGN+DD 
Sbjct: 107 LCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDV 166

Query: 133 LTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHT 192
           +T +D +  +   + +F +EVNEISWN    MFFLT GNG + +L  P L+P++++ AH 
Sbjct: 167 VTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHP 226

Query: 193 AGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA 252
           + C CI  DP+G+YFA GSAD+LVSLWD+ +++CVR F+RL+WPVRT+SF+H G+ +ASA
Sbjct: 227 SNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASA 286

Query: 253 SEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI 312
           SED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++
Sbjct: 287 SEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKL 346

[Close]

BLAST of Sed0014475 vs. ExPASy Swiss-Prot
Match: Q96J01 (THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.5e-90
Identity = 152/302 (50.33%), Postives = 212/302 (70.20%), Query Frame = 0


Query: 13  ESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQ 72
           ++RE+  H  KVHSVAW+C G ++ASGS D+TA V+ ++      +K+   +GH DSVDQ
Sbjct: 47  KTREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQ 106

Query: 73  LCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGTHIAVGNRDDE 132
           LCW P + DL  TASGDKT+R+WD R  KC       GENINI + PDG  IAVGN+DD 
Sbjct: 107 LCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDV 166

Query: 133 LTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHT 192
           +T +D +  +   + +F +EVNEISWN    MFFLT GNG + +L  P L+P++++ AH 
Sbjct: 167 VTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHP 226

Query: 193 AGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASA 252
           + C CI  DP+G+YFA GSAD+LVSLWD+ +++CVR F+RL+WPVRT+SF+H G+ +ASA
Sbjct: 227 SNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASA 286

Query: 253 SEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRI 312
           SED FIDI+ V+TG  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++
Sbjct: 287 SEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKL 346

[Close]

BLAST of Sed0014475 vs. ExPASy Swiss-Prot
Match: P14197 (WD repeat-containing protein AAC3 OS=Dictyostelium discoideum OX=44689 GN=AAC3 PE=2 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 2.3e-64
Identity = 120/333 (36.04%), Postives = 194/333 (58.26%), Query Frame = 0


Query: 5   ASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGK------- 64
           AS  F    ++++ G+KKK  SVAWN  G K+AS   D   RVW+ DP G+         
Sbjct: 149 ASRYFSECSTKDFIGNKKKSTSVAWNANGTKIASSGSDGIVRVWNFDPLGNSNNNNNSNN 208

Query: 65  ----------LKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTE 124
                      + +ELKGH  S++++ W PK++DL+A+A  DK +++WD +  KC     
Sbjct: 209 TSSNSKNNNIKETIELKGHDGSIEKISWSPKNNDLLASAGTDKVIKIWDVKIGKCIGTVS 268

Query: 125 LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHKSKFN-YEVNEISWNMTGEMFF 184
            + ENI++ + PDG  I    RDD L ++D+   K +   KFN  E+N++ W+  G++  
Sbjct: 269 TNSENIDVRWSPDGQFIVACTRDDHLALIDLPTIKTLKIYKFNGEELNQVGWDNNGDLIL 328

Query: 185 LTTGNGTVEVLE-----NPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDI 244
           +    G +E  +        ++ ++TL  HTA  YC+  DP G+Y A GSADS+VSLWDI
Sbjct: 329 MANSMGNIEAYKFLPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDI 388

Query: 245 SQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSV 304
             M+CV+TF +  +P R++SF+  G++IA++S +  I+I ++++ + +H I C + ++S+
Sbjct: 389 EDMMCVKTFIKSTFPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSL 448

Query: 305 EWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES 315
            W+P   LLAYA  + N+   D  I R+FG+ S
Sbjct: 449 MWHPTLPLLAYA-PEINENNKDPSI-RVFGYHS 478

[Close]

BLAST of Sed0014475 vs. ExPASy TrEMBL
Match: A0A0A0L651 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G061010 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 296/314 (94.27%), Postives = 304/314 (96.82%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEESA + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESAQA-FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFES 315
           QADEGIFRIFGFES
Sbjct: 301 QADEGIFRIFGFES 313

[Close]

BLAST of Sed0014475 vs. ExPASy TrEMBL
Match: A0A1S3BM38 (THO complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103491048 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 296/314 (94.27%), Postives = 304/314 (96.82%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEESA + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESAQA-FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFES 315
           QADEGIFRIFGFES
Sbjct: 301 QADEGIFRIFGFES 313

[Close]

BLAST of Sed0014475 vs. ExPASy TrEMBL
Match: A0A6J1KZA7 (THO complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111498453 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 3.7e-174
Identity = 294/315 (93.33%), Postives = 304/315 (96.51%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEES  + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESTPA-FKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFESA 316
           QADEGIFRIFGFESA
Sbjct: 301 QADEGIFRIFGFESA 314

[Close]

BLAST of Sed0014475 vs. ExPASy TrEMBL
Match: A0A6J1G4N9 (THO complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111450715 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 3.7e-174
Identity = 294/315 (93.33%), Postives = 304/315 (96.51%), Query Frame = 0


Query: 1   MEESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKD 60
           MEES  + FKNL SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KD
Sbjct: 1   MEESTPA-FKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKD 60

Query: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPD 120
           VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARN KCS Q ELSGENINITYKPD
Sbjct: 61  VELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPD 120

Query: 121 GTHIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENP 180
           GTHIAVGNRDDELTILDVRKFKP+HK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  P
Sbjct: 121 GTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYP 180

Query: 181 SLRPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTI 240
           SLRPIETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTI
Sbjct: 181 SLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTI 240

Query: 241 SFNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300
           SFNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY
Sbjct: 241 SFNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY 300

Query: 301 QADEGIFRIFGFESA 316
           QADEGIFRIFGFESA
Sbjct: 301 QADEGIFRIFGFESA 314

[Close]

BLAST of Sed0014475 vs. ExPASy TrEMBL
Match: A0A6J1DNX6 (THO complex subunit 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022151 PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.1e-173
Identity = 290/313 (92.65%), Postives = 303/313 (96.81%), Query Frame = 0


Query: 3   ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE 62
           E A+  FKNL+SREYQGHKKKVHSVAWNCTG+K+ASGSVDQTARVWHI+PHGHGK+KDVE
Sbjct: 2   EEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVE 61

Query: 63  LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGT 122
           LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+ KCS Q ELSGENINITYKPDGT
Sbjct: 62  LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGT 121

Query: 123 HIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSL 182
           H+AVGNRDDELTILDVRKFKPIHK KFNYEVNEI+WNMTGEMFFLTTGNGTVEVL  PSL
Sbjct: 122 HVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSL 181

Query: 183 RPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISF 242
           RP+ETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFT+LEWPVRTISF
Sbjct: 182 RPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISF 241

Query: 243 NHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA 302
           N+TG+YIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA
Sbjct: 242 NYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQA 301

Query: 303 DEGIFRIFGFESA 316
           DEGIFRIFGFESA
Sbjct: 302 DEGIFRIFGFESA 314

[Close]

BLAST of Sed0014475 vs. TAIR 10
Match: AT5G56130.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 564.3 bits (1453), Expect = 6.1e-161
Identity = 261/314 (83.12%), Postives = 288/314 (91.72%), Query Frame = 0


Query: 3   ESASSIFKNLESREYQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE 62
           E  +  FK+L SREYQGHKKKVHSVAWN  G K+ASGSVDQTAR+W+I+PHGH K KD+E
Sbjct: 2   EETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLE 61

Query: 63  LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNAKCSHQTELSGENINITYKPDGT 122
           LKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR+ KC+ Q ELSGENINITYKPDGT
Sbjct: 62  LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDGT 121

Query: 123 HIAVGNRDDELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSL 182
           H+AVGNRDDELTILDVRKFKP+H+ KFNYEVNEI+WNM G+ FFLTTG GTVEVL  PSL
Sbjct: 122 HVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSL 181

Query: 183 RPIETLMAHTAGCYCIAIDPVGEYFAVGSADSLVSLWDISQMLCVRTFTRLEWPVRTISF 242
           +P++TL AHTAGCYCIAIDP G YFAVGSADSLVSLWDIS MLC+RTFT+LEWPVRTISF
Sbjct: 182 KPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISF 241

Query: 243 NHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQ 302
           N++GEYIASASEDLFIDI+NVQTGRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY 
Sbjct: 242 NYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYN 301

Query: 303 ADEGIFRIFGFESA 316
            DEG+FRIFGFES+
Sbjct: 302 TDEGVFRIFGFESS 315

[Close]

BLAST of Sed0014475 vs. TAIR 10
Match: AT5G67320.1 (WD-40 repeat family protein )

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-23
Identity = 79/283 (27.92%), Postives = 129/283 (45.58%), Query Frame = 0


Query: 22  KKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVELKGHTDSVDQLCWDPKHSD 81
           K V ++ WN  G  +A+GS D  AR+W +    +G+L    L  H   +  L W+ K  D
Sbjct: 325 KDVTTLDWNGEGTLLATGSCDGQARIWTL----NGELIST-LSKHKGPIFSLKWN-KKGD 384

Query: 82  LIATASGDKTVRLWDARNAKCSHQTEL-SGENINITYKPDGTHIAVGNRDDELTILDVRK 141
            + T S D+T  +WD +  +   Q E  SG  +++ ++ +    A  + D  + +  + +
Sbjct: 385 YLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDSMIYLCKIGE 444

Query: 142 FKPIHK-SKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIA 201
            +P    +    EVN + W+ TG +    + + T ++        +  L  HT   Y I 
Sbjct: 445 TRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIR 504

Query: 202 IDPVGE---------YFAVGSADSLVSLWD--ISQMLCVRTFTRLEWPVRTISFNHTGEY 261
             P G            A  S DS V LWD  + +MLC  +F     PV +++F+  GEY
Sbjct: 505 WSPTGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLC--SFNGHREPVYSLAFSPNGEY 564

Query: 262 IASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLA 292
           IAS S D  I I +++ G+ V        +  V WN + N +A
Sbjct: 565 IASGSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKIA 598

[Close]

BLAST of Sed0014475 vs. TAIR 10
Match: AT5G25150.1 (TBP-associated factor 5 )

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-16
Identity = 64/259 (24.71%), Postives = 106/259 (40.93%), Query Frame = 0


Query: 17  YQGHKKKVHSVAWNCTGLKVASGSVDQTARVWHIDPHGHGKLKDVE-LKGHTDSVDQLCW 76
           Y+GH   V    ++  G   AS S D+TAR+W +D     +++ +  + GH   VD + W
Sbjct: 456 YKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMD-----RIQPLRIMAGHLSDVDCVQW 515

Query: 77  DPKHSDLIATASGDKTVRLWDARNAKC-----SHQTELSGENINITYKPDGTHIAVGNRD 136
            P + + IAT S DKTVRLWD +  +C      H++ +    +++   PDG ++A G+ D
Sbjct: 516 HP-NCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMV----LSLAMSPDGRYMASGDED 575

Query: 137 DELTILDVRKFKPIHKSKFNYEVNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMA 196
                                                    GT+ + +  + R I  LM 
Sbjct: 576 -----------------------------------------GTIMMWDLSTARCITPLMG 635

Query: 197 HTAGCYCIAIDPVGEYFAVGSADSLVSLWDI----------------SQMLCVRTFTRLE 254
           H +  + ++    G   A GSAD  V LWD+                +++  +RTF    
Sbjct: 636 HNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKS 663

[Close]

BLAST of Sed0014475 vs. TAIR 10
Match: AT5G08390.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-14
Identity = 38/160 (23.75%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 153 VNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA 212
           ++ ++++ +  +      +GT+++ +    + + TL  H + C  +   P GE+FA GS 
Sbjct: 62  IDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSL 121

Query: 213 DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQI 272
           D+ + +WDI +  C+ T+      V  + F   G +I S  ED  + + ++  G+ +H+ 
Sbjct: 122 DTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEF 181

Query: 273 PC-RAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFG 312
                 + S++++P   LLA    DK     D   F + G
Sbjct: 182 KSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLETFELIG 221

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BLAST of Sed0014475 vs. TAIR 10
Match: AT1G11160.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 7.3e-13
Identity = 34/160 (21.25%), Postives = 75/160 (46.88%), Query Frame = 0


Query: 153 VNEISWNMTGEMFFLTTGNGTVEVLENPSLRPIETLMAHTAGCYCIAIDPVGEYFAVGSA 212
           V+ +++N    +      +G +++ +    + +     H + C  +   P GE+ A GS+
Sbjct: 61  VDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSS 120

Query: 213 DSLVSLWDISQMLCVRTFTRLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRTVHQI 272
           D+ + +WD  +  C++T+      + TI F+  G ++ S   D  + + ++  G+ +H+ 
Sbjct: 121 DTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEF 180

Query: 273 PC-RAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFG 312
            C    + S++++P   LLA    D+     D   F + G
Sbjct: 181 KCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIG 220

The following BLAST results are available for this feature:

BLAST of Sed0014475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905145.1	8.3e-176	94.60	THO complex subunit 3 [Benincasa hispida]	[more]
XP_004149572.1	4.1e-175	94.27	THO complex subunit 3 [Cucumis sativus] >XP_008449067.1 PREDICTED: THO complex s...	[more]
XP_022946738.1	7.7e-174	93.33	THO complex subunit 3 [Cucurbita moschata] >XP_023005479.1 THO complex subunit 3...	[more]
XP_022155009.1	2.2e-173	92.65	THO complex subunit 3 isoform X2 [Momordica charantia]	[more]
XP_030446900.1	6.1e-171	90.22	THO complex subunit 3 [Syzygium oleosum] >XP_030446901.1 THO complex subunit 3 [...	[more]

BLAST of Sed0014475 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKT5	8.6e-160	83.12	THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1	[more]
Q29RH4	1.1e-90	50.33	THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1	[more]
Q8VE80	1.1e-90	50.33	THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1	[more]
Q96J01	1.5e-90	50.33	THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1	[more]
P14197	2.3e-64	36.04	WD repeat-containing protein AAC3 OS=Dictyostelium discoideum OX=44689 GN=AAC3 P...	[more]

BLAST of Sed0014475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L651	2.0e-175	94.27	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A1S3BM38	2.0e-175	94.27	THO complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103491048 PE=4 SV=1	[more]
A0A6J1KZA7	3.7e-174	93.33	THO complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111498453 PE=4 SV=1	[more]
A0A6J1G4N9	3.7e-174	93.33	THO complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111450715 PE=4 SV=1	[more]
A0A6J1DNX6	1.1e-173	92.65	THO complex subunit 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022151 ...	[more]

BLAST of Sed0014475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56130.1	6.1e-161	83.12	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G67320.1	2.0e-23	27.92	WD-40 repeat family protein	[more]
AT5G25150.1	7.1e-16	24.71	TBP-associated factor 5	[more]
AT5G08390.1	1.7e-14	23.75	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G11160.1	7.3e-13	21.25	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 207..221 score: 33.56 coord: 36..50 score: 35.69 coord: 83..97 score: 43.08
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 140..178 e-value: 83.0 score: 4.9 coord: 181..220 e-value: 4.9E-8 score: 42.7 coord: 223..262 e-value: 1.3 score: 16.2 coord: 265..303 e-value: 48.0 score: 6.4 coord: 56..96 e-value: 5.2E-8 score: 42.6 coord: 10..49 e-value: 6.7E-7 score: 38.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 15..48 e-value: 2.6E-5 score: 24.9 coord: 184..220 e-value: 0.0096 score: 16.8 coord: 62..96 e-value: 1.6E-4 score: 22.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 188..229 score: 12.313033
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 63..105 score: 15.253835
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 17..51 score: 12.647216
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 179..305 e-value: 7.2E-24 score: 86.2
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 6..178 e-value: 3.0E-34 score: 120.3
IPR024977	Anaphase-promoting complex subunit 4, WD40 domain	PFAM	PF12894	ANAPC4_WD40	coord: 236..284 e-value: 2.6E-4 score: 21.2
IPR040132	TREX component Tex1/THOC3	PANTHER	PTHR22839	THO COMPLEX SUBUNIT 3 THO3	coord: 3..313
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 83..97
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 63..99 score: 11.89286
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 188..222 score: 9.783781
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 17..51 score: 10.521959
None	No IPR available	CDD	cd00200	WD40	coord: 13..297 e-value: 1.96969E-41 score: 143.63
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 11..297

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014475.1	Sed0014475.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
cellular_component	GO:0000445	THO complex part of transcription export complex
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding