Sed0012515 (gene) Chayote v1

Overview


Name	Sed0012515
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Replication termination factor 2
Location	LG08: 4117109 .. 4118752 (+)
RNA-Seq Expression	Sed0012515
Synteny	Sed0012515

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGAAGAACCAAAATTTCCGGATAATACAATCAGTGCCCTTCCCGTTCATCTCTCAAATCGGAAAATCATCGCCGTTCTGACTCTGATCGGAACCCTAGCTTCAGATTTTCTCAACAATCATCATCGTTCACATCCCACAGAATTTCATCATCGTCTCCGATTCTCAAAACCCTAACCAATGCATCCGAAAAACCAACACCGTCGTCAGATCTTCGTCCATTCTCCAGATCTCCAAATCCAATCCAAATTCGTAACCCCAGCCCAAACCCTAGATGATCTCAAGTCATCCCTTCTCCCTGAATCGCTTCCTTCACCGGCCGCTTCTTCGTTCTTCTTCACCCTAAATGGGAAACCCCTCCTCGATTCCACCGCAATTTCCGTAATTCCCCAATGGTCCACCTTGATTTTGCGAACTAGGGTTTGCGGTGGCGGCGGCGATGGCGGTGCGACCGGAGCCGAATCCCGCGACTGCTACCTTAAGATGTACCAAGAGAAGAAGCCCGATAAGGTCGACCCTAACGAGCAGAGGCTGTCCAAGTGGTTGAATTGCGCTCTTTCTAATGAGCCGTTGAGGGAGCCTTGTGTGATTGATTGGCTTGGGAATGTATTCAACAAGGAGTCGTTGGTTCATGCTTTGCTGGAGAAGAAGCTGCCGAAGGGATTTGGACATATCAAGGGTTTGAAGGATATGATCAAGATTAATCTTTCGATGATTCCGGGTGTCAAATCACATGGCGATGGGAGCTCGGAGTGGCGGTTTCAATGCCCGATTACTGGGCTTGAGTTCAATGGTAAGTATAAGTTTTTTGCTTTGAGAACTTGTGGGCATGTGTTGAGTGCTAAGGCATTGAAGGAGGTTAAATCTTCTTCCTGCCTTGTTTGTCATGCTGAGTTTAATGATAGAGATAAGTTTGTGATCAATGGGAATGAGGAGGAGGTGGAAGAAATGAGGGTGAGGATGGAGGAAGAGAAATCGAAATCGAAATCGAAGGAGAAGAAGACGAAGAAGGTGAGGAATGGGGAATTGGGTATGAATGGAGATGTGAATGTGGATTTGGCACCATCCCGTTTGTCTGGTAAAAAGCATGGTATTGAAGTTAAGGCTTCGGAGAAGGTTTCGGCTAAGCCCGAAAAGCTCGAGCAATCAGATAATGGGGTTCAGGTTAAGGTTGCATCTAGTAATGGTGCTGTGAAGAAATTTAAAGCATCAGACATGGCCCCTGCCAATGCTACCAAAGAAGTCTATGCTTCAATATTCACCTCATCTAGGAAGTCAGATTTCAAGGAAACATATTCTTGTAGGTCTCTTCCACTTGGTCGAAACTGATTGGTGTTAAGAAGTGAGTGGTTCTAACGAAGTAACCAGCAAGTTATAGGTTCGAATCTCCTTGCTCAAATGTCGTTTAATAAAAAGAAACTGCCTAGCTCGGATTATGGTGATTCTGCTTATATTGTTTGTATTCAGACCTTCATTTTAATGTCCTTTTTTGACTTGTTGATTCATGTCTTATCGTTTCTAATTATTGTAATATATAAGTTTACAGACATCAACTGGCTGTTACTCTGTTAAACTGTTTTACAATTTTAGGTCAGTCAATATTTGCTGAAAGTCTTGCGCAGAACAATTCATCTAGTTTGTTC

mRNA sequence

CTTGGAAGAACCAAAATTTCCGGATAATACAATCAGTGCCCTTCCCGTTCATCTCTCAAATCGGAAAATCATCGCCGTTCTGACTCTGATCGGAACCCTAGCTTCAGATTTTCTCAACAATCATCATCGTTCACATCCCACAGAATTTCATCATCGTCTCCGATTCTCAAAACCCTAACCAATGCATCCGAAAAACCAACACCGTCGTCAGATCTTCGTCCATTCTCCAGATCTCCAAATCCAATCCAAATTCGTAACCCCAGCCCAAACCCTAGATGATCTCAAGTCATCCCTTCTCCCTGAATCGCTTCCTTCACCGGCCGCTTCTTCGTTCTTCTTCACCCTAAATGGGAAACCCCTCCTCGATTCCACCGCAATTTCCGTAATTCCCCAATGGTCCACCTTGATTTTGCGAACTAGGGTTTGCGGTGGCGGCGGCGATGGCGGTGCGACCGGAGCCGAATCCCGCGACTGCTACCTTAAGATGTACCAAGAGAAGAAGCCCGATAAGGTCGACCCTAACGAGCAGAGGCTGTCCAAGTGGTTGAATTGCGCTCTTTCTAATGAGCCGTTGAGGGAGCCTTGTGTGATTGATTGGCTTGGGAATGTATTCAACAAGGAGTCGTTGGTTCATGCTTTGCTGGAGAAGAAGCTGCCGAAGGGATTTGGACATATCAAGGGTTTGAAGGATATGATCAAGATTAATCTTTCGATGATTCCGGGTGTCAAATCACATGGCGATGGGAGCTCGGAGTGGCGGTTTCAATGCCCGATTACTGGGCTTGAGTTCAATGGTAAGTATAAGTTTTTTGCTTTGAGAACTTGTGGGCATGTGTTGAGTGCTAAGGCATTGAAGGAGGTTAAATCTTCTTCCTGCCTTGTTTGTCATGCTGAGTTTAATGATAGAGATAAGTTTGTGATCAATGGGAATGAGGAGGAGGTGGAAGAAATGAGGGTGAGGATGGAGGAAGAGAAATCGAAATCGAAATCGAAGGAGAAGAAGACGAAGAAGGTGAGGAATGGGGAATTGGGTATGAATGGAGATGTGAATGTGGATTTGGCACCATCCCGTTTGTCTGGTAAAAAGCATGGTATTGAAGTTAAGGCTTCGGAGAAGGTTTCGGCTAAGCCCGAAAAGCTCGAGCAATCAGATAATGGGGTTCAGGTTAAGGTTGCATCTAGTAATGGTGCTGTGAAGAAATTTAAAGCATCAGACATGGCCCCTGCCAATGCTACCAAAGAAGTCTATGCTTCAATATTCACCTCATCTAGGAAGTCAGATTTCAAGGAAACATATTCTTGTAGGTCTCTTCCACTTGGTCGAAACTGATTGGTGTTAAGAAGTGAGTGGTTCTAACGAAGTAACCAGCAAGTTATAGGTTCGAATCTCCTTGCTCAAATGTCGTTTAATAAAAAGAAACTGCCTAGCTCGGATTATGGTGATTCTGCTTATATTGTTTGTATTCAGACCTTCATTTTAATGTCCTTTTTTGACTTGTTGATTCATGTCTTATCGTTTCTAATTATTGTAATATATAAGTTTACAGACATCAACTGGCTGTTACTCTGTTAAACTGTTTTACAATTTTAGGTCAGTCAATATTTGCTGAAAGTCTTGCGCAGAACAATTCATCTAGTTTGTTC

Coding sequence (CDS)

ATGCATCCGAAAAACCAACACCGTCGTCAGATCTTCGTCCATTCTCCAGATCTCCAAATCCAATCCAAATTCGTAACCCCAGCCCAAACCCTAGATGATCTCAAGTCATCCCTTCTCCCTGAATCGCTTCCTTCACCGGCCGCTTCTTCGTTCTTCTTCACCCTAAATGGGAAACCCCTCCTCGATTCCACCGCAATTTCCGTAATTCCCCAATGGTCCACCTTGATTTTGCGAACTAGGGTTTGCGGTGGCGGCGGCGATGGCGGTGCGACCGGAGCCGAATCCCGCGACTGCTACCTTAAGATGTACCAAGAGAAGAAGCCCGATAAGGTCGACCCTAACGAGCAGAGGCTGTCCAAGTGGTTGAATTGCGCTCTTTCTAATGAGCCGTTGAGGGAGCCTTGTGTGATTGATTGGCTTGGGAATGTATTCAACAAGGAGTCGTTGGTTCATGCTTTGCTGGAGAAGAAGCTGCCGAAGGGATTTGGACATATCAAGGGTTTGAAGGATATGATCAAGATTAATCTTTCGATGATTCCGGGTGTCAAATCACATGGCGATGGGAGCTCGGAGTGGCGGTTTCAATGCCCGATTACTGGGCTTGAGTTCAATGGTAAGTATAAGTTTTTTGCTTTGAGAACTTGTGGGCATGTGTTGAGTGCTAAGGCATTGAAGGAGGTTAAATCTTCTTCCTGCCTTGTTTGTCATGCTGAGTTTAATGATAGAGATAAGTTTGTGATCAATGGGAATGAGGAGGAGGTGGAAGAAATGAGGGTGAGGATGGAGGAAGAGAAATCGAAATCGAAATCGAAGGAGAAGAAGACGAAGAAGGTGAGGAATGGGGAATTGGGTATGAATGGAGATGTGAATGTGGATTTGGCACCATCCCGTTTGTCTGGTAAAAAGCATGGTATTGAAGTTAAGGCTTCGGAGAAGGTTTCGGCTAAGCCCGAAAAGCTCGAGCAATCAGATAATGGGGTTCAGGTTAAGGTTGCATCTAGTAATGGTGCTGTGAAGAAATTTAAAGCATCAGACATGGCCCCTGCCAATGCTACCAAAGAAGTCTATGCTTCAATATTCACCTCATCTAGGAAGTCAGATTTCAAGGAAACATATTCTTGTAGGTCTCTTCCACTTGGTCGAAACTGA

Protein sequence

MHPKNQHRRQIFVHSPDLQIQSKFVTPAQTLDDLKSSLLPESLPSPAASSFFFTLNGKPLLDSTAISVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINLSMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPSRLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKEVYASIFTSSRKSDFKETYSCRSLPLGRN

Homology

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BLAST of Sed0012515 vs. NCBI nr
Match: XP_008444038.1 (PREDICTED: protein RTF2 homolog [Cucumis melo] >KAA0035058.1 protein RTF2-like protein [Cucumis melo var. makuwa] >TYK03620.1 protein RTF2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 637.5 bits (1643), Expect = 7.4e-179
Identity = 328/386 (84.97%), Postives = 347/386 (89.90%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           MHPKNQHR QIF+HSPDLQIQSK V    T A+TL+DLK SLL E+L S  ASS +FTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSTAISVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQ 120
           GKPLLDST IS+IP  STLILRTRV GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQ
Sbjct: 61  GKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQ 120

Query: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINL 180
           RLSKWLNCALSNEPL EPCVIDWLGNVFNKESLV ALLEKKLPKGFGHIKGLKDMIKIN 
Sbjct: 121 RLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKINF 180

Query: 181 SMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240
           SMIPG +S G+  SE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH
Sbjct: 181 SMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240

Query: 241 AEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPS 300
            EF +RDKFVING+EEEVEEMR RMEEEKSKSKSKEKKTKKVRNGE+GMNGDV +DLA S
Sbjct: 241 TEFTERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVTMDLATS 300

Query: 301 RLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKEVY 360
           RLSGKKHGIE++  EKVSAKPE+ E+ D G QVKVA+SNGAVK+FKA+DM PANATKEVY
Sbjct: 301 RLSGKKHGIELQTLEKVSAKPERHERLDGGAQVKVAASNGAVKRFKAADMVPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 383
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Sed0012515 vs. NCBI nr
Match: XP_011655923.1 (replication termination factor 2 [Cucumis sativus] >KGN65240.1 hypothetical protein Csa_019614 [Cucumis sativus])

HSP 1 Score: 637.5 bits (1643), Expect = 7.4e-179
Identity = 329/386 (85.23%), Postives = 349/386 (90.41%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           MHPKNQHR QIF+ SPDLQI+SK V    TPA+TL+DLK SLL E L S  ASSF+FTLN
Sbjct: 1   MHPKNQHRFQIFLQSPDLQIESKIVNLPQTPAKTLEDLKFSLLTEILASRIASSFYFTLN 60

Query: 61  GKPLLDSTAISVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQ 120
           GKPLLDST IS+IP  STLILRTRV GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQ
Sbjct: 61  GKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQ 120

Query: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINL 180
           RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLV ALLEKKLPKGFGHIKGLKDMIKIN 
Sbjct: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKINF 180

Query: 181 SMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240
           SMIPG +S G+  SE R+QCP+TGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH
Sbjct: 181 SMIPGTESRGNAISEPRYQCPVTGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240

Query: 241 AEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPS 300
           AEF +RDKFVING+EEEVEEMR RMEEEKSKSKSKEKKTKKVRNGE+GMNGDV+VDLA S
Sbjct: 241 AEFAERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVSVDLAIS 300

Query: 301 RLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKEVY 360
           RLSGKKH IEVK+ EKVSAKPE+ E+ D G QVK A+SNGAVK+FKA+DM PANATKEVY
Sbjct: 301 RLSGKKHAIEVKSLEKVSAKPERQERLDGGAQVKDATSNGAVKRFKAADMVPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 383
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

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BLAST of Sed0012515 vs. NCBI nr
Match: XP_038879920.1 (replication termination factor 2 [Benincasa hispida])

HSP 1 Score: 635.2 bits (1637), Expect = 3.7e-178
Identity = 329/388 (84.79%), Postives = 352/388 (90.72%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           MHPKN+HR QIF+HS DLQIQS+ V    +PAQTL+DLK SLLPE+L S  ASSF+FTLN
Sbjct: 1   MHPKNEHRLQIFLHSLDLQIQSQIVNLPQSPAQTLEDLKFSLLPETLASRVASSFYFTLN 60

Query: 61  GKPLLDSTAI--SVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPN 120
           GKPL DST I  S++P  STLILRTRV GGGGDGGATGAESRDCYL MY EKKPDKVDPN
Sbjct: 61  GKPLPDSTTIPSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLS+IPG +S G+  SE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSVIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLA 300
           CHAEF +RDKFVING+EEEVEEMR RMEEEKSKS+SKEKKTKKVRN E G+NGD++VD A
Sbjct: 241 CHAEFTNRDKFVINGSEEEVEEMRERMEEEKSKSRSKEKKTKKVRNEEGGINGDMSVDFA 300

Query: 301 PSRLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKE 360
            SRLSGKKHGIEVKA EKVSAKPE+ E+ D GVQVKVA+SNGAVK+FKA+DM PANATKE
Sbjct: 301 ASRLSGKKHGIEVKALEKVSAKPERHERPDGGVQVKVAASNGAVKRFKAADMVPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 383
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 388

[Close]

BLAST of Sed0012515 vs. NCBI nr
Match: XP_022933589.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 620.2 bits (1598), Expect = 1.2e-173
Identity = 325/388 (83.76%), Postives = 345/388 (88.92%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           M+PKNQHR Q FVHSPDLQIQSK V    T AQ+L DLK SL+  +  S  ASSF+FTLN
Sbjct: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60

Query: 61  GKPLLDSTAI--SVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPN 120
           GKPLLDS  I  S++P  STLILRTRV GGGGDGGATGAESRDCYLKMY EKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKE LVHALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSM+PG +S G+  SE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMVPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLA 300
           CHAEF DRDKFVING+EEEV  MR RMEEE  K+KSKEKKTKKVR GE+GMNGDV+VDLA
Sbjct: 241 CHAEFMDRDKFVINGSEEEVVRMRERMEEE--KTKSKEKKTKKVRTGEVGMNGDVSVDLA 300

Query: 301 PSRLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKE 360
            SRLSGKKHGIE KA  KVSAKPEK E+ D+GVQVKVA+SNGAVK+FKA+DMAPANATKE
Sbjct: 301 SSRLSGKKHGIEGKALGKVSAKPEKHERPDSGVQVKVAASNGAVKRFKAADMAPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 383
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. NCBI nr
Match: XP_023531451.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 617.1 bits (1590), Expect = 1.0e-172
Identity = 324/388 (83.51%), Postives = 344/388 (88.66%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           M+PKNQHR Q FVHSPDLQIQS  V    T AQ+L DLK SLL ++  S  ASSF+FTLN
Sbjct: 1   MYPKNQHRLQFFVHSPDLQIQSTIVNLAQTSAQSLADLKLSLLLKTPASRLASSFYFTLN 60

Query: 61  GKPLLDSTAI--SVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPN 120
           GKPLLDS  I  S++P  STLILRTRV GGGGDGGATGAESRDCYLKMY EKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNC+LSNEPLREPCVIDWLGN+FNKESLVHALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCSLSNEPLREPCVIDWLGNIFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSMIPG +S G+  SE RFQCPITGLE NGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMIPGTESRGNAISEARFQCPITGLESNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLA 300
           CH EF DRDKFVING+EEEV  MR RMEEE  K+KSKEKKTKKVR GE+GMNGDV+VDLA
Sbjct: 241 CHTEFMDRDKFVINGSEEEVVRMRERMEEE--KTKSKEKKTKKVRTGEVGMNGDVSVDLA 300

Query: 301 PSRLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKE 360
           PSRLSGKKHGIE KA  KVSAKPEK E+ D+GVQVKVA+SNG VK+FKA+DMAPANATKE
Sbjct: 301 PSRLSGKKHGIEGKALGKVSAKPEKHERPDSGVQVKVAASNGGVKRFKAADMAPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 383
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. ExPASy Swiss-Prot
Match: Q3T1J8 (Replication termination factor 2 OS=Rattus norvegicus OX=10116 GN=Rtf2 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-31
Identity = 99/272 (36.40%), Postives = 147/272 (54.04%), Query Frame = 0


Query: 106 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFG-- 165
           KK +KVD + + +++W  C LS E LR P V   LG ++NK++++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 166 --HIKGLKDMIKINLSMIP---GVKSHGDGS-----SEWRFQCPITGLEFNGKYKFFALR 225
             HI+ +K++ ++ LS  P   G K +  G         RF CP+ GLE NG+++F  LR
Sbjct: 79  TSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 226 TCGHVLSAKALKEVKSSSCLVCHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEK 285
            CG V S +ALKE+K+  C  C A F + D  V+NG +E+VE ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRMEERRLRAK-LEK 198

Query: 286 KTKKVRNGELGMNGDVNVDLA-PSRL-SGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKV 345
           KTKK +  E      ++ D A PS+  +GK    +    EK S+   +   S+     KV
Sbjct: 199 KTKKPKTAESASKLGISQDSAGPSKAKAGKSEEADPDPREKKSSLAPRGTASNGSASGKV 258

Query: 346 ASSN-GAVKKFKASDMAPANATKEVYASIFTS 363
                GA+K+  A      +   E Y SIFTS
Sbjct: 259 GKPPCGALKRSIAD-----SEESETYKSIFTS 284

[Close]

BLAST of Sed0012515 vs. ExPASy Swiss-Prot
Match: Q9BY42 (Replication termination factor 2 OS=Homo sapiens OX=9606 GN=RTF2 PE=1 SV=3)

HSP 1 Score: 133.7 bits (335), Expect = 4.6e-30
Identity = 100/285 (35.09%), Postives = 155/285 (54.39%), Query Frame = 0


Query: 106 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFG-- 165
           KK +KVD + + +++W  C LS E LR P V   LG ++NK++++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 166 --HIKGLKDMIKINLSMIP---GVKSHGDGS-----SEWRFQCPITGLEFNGKYKFFALR 225
             HIK +K++ ++ LS  P   G K +  G         RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 226 TCGHVLSAKALKEVKSSSCLVCHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEK 285
            CG V S +ALKE+K+  C  C A F + D  ++NG +E+V+ ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIMLNGTKEDVDVLKTRMEERRLRAK-LEK 198

Query: 286 KTKKVRNGELGMNGDVNVDL-APSRL-SGKKHGIEVKASEK---VSAKPEKLEQSDNGVQ 345
           KTKK +  E     DV+ +   PS++ +GK     + + EK   ++ K   + +S +G  
Sbjct: 199 KTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAMNESSSGKA 258

Query: 346 VKVASSNGAVKKFKASDMAPANATKEVYASIFT--SSRKSDFKET 372
            K     GA K+  A      +   E Y S+FT  SS K   +E+
Sbjct: 259 GKPPC--GATKRSIAD-----SEESEAYKSLFTTHSSAKRSKEES 295

[Close]

BLAST of Sed0012515 vs. ExPASy Swiss-Prot
Match: Q5R9P9 (Replication termination factor 2 OS=Pongo abelii OX=9601 GN=RTF2 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.6e-30
Identity = 101/285 (35.44%), Postives = 154/285 (54.04%), Query Frame = 0


Query: 106 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFG-- 165
           KK +KVD + + +++W  C LS E LR P V   LG ++NK++++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 166 --HIKGLKDMIKINLSMIP---GVKSHGDGS-----SEWRFQCPITGLEFNGKYKFFALR 225
             HIK +K++ ++ LS  P   G K +  G         RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 226 TCGHVLSAKALKEVKSSSCLVCHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEK 285
            CG V S +ALKE+K+  C  C A F + D  V+NG +E+V+ ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRMEERRLRAK-LEK 198

Query: 286 KTKKVRNGELGMNGDVNVDL-APSRL-SGKKHGIEVKASEK---VSAKPEKLEQSDNGVQ 345
           KTKK +  E     DV+ +   PS++ +GK     + + EK   ++ K     +S +G  
Sbjct: 199 KTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTATNESSSGKA 258

Query: 346 VKVASSNGAVKKFKASDMAPANATKEVYASIFT--SSRKSDFKET 372
            K     GA K+  A      +   E Y S+FT  SS K   +E+
Sbjct: 259 GKPPC--GATKRSIAD-----SEESEAYKSLFTTHSSAKRSKEES 295

[Close]

BLAST of Sed0012515 vs. ExPASy Swiss-Prot
Match: Q99K95 (Replication termination factor 2 OS=Mus musculus OX=10090 GN=Rtf2 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-30
Identity = 97/273 (35.53%), Postives = 143/273 (52.38%), Query Frame = 0


Query: 106 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFG-- 165
           KK +KVD + + +++W  C LS E LR P V   LG ++NK++++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 166 --HIKGLKDMIKINLSMIP---GVKSHGDGS-----SEWRFQCPITGLEFNGKYKFFALR 225
             HI+ +K++ ++ LS  P   G K +  G         RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 226 TCGHVLSAKALKEVKSSSCLVCHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEK 285
            CG V S +ALKE+K+  C  C A F + D  V+NG +E+VE ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRMEERRLRAK-LEK 198

Query: 286 KTKKVRNGE--LGMNGDVNVDLAPSRL-SGKKHGIEVKASEKVSAKPEKLEQSDNGVQVK 345
           KTKK +         G       PS++ SGK    +    EK S    +   ++     K
Sbjct: 199 KTKKPKTATECASKPGTTQDSAGPSKVKSGKPEEADPDPREKKSTPAPRGAATNGSASGK 258

Query: 346 VASSN-GAVKKFKASDMAPANATKEVYASIFTS 363
           V     GA+K+  A      +   E Y SIFTS
Sbjct: 259 VGKPPCGALKRSIAD-----SEESETYKSIFTS 285

[Close]

BLAST of Sed0012515 vs. ExPASy Swiss-Prot
Match: Q4R594 (Replication termination factor 2 OS=Macaca fascicularis OX=9541 GN=RTF2 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-29
Identity = 91/276 (32.97%), Postives = 145/276 (52.54%), Query Frame = 0


Query: 106 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFG-- 165
           KK +KVD + + +++W  C LS E LR P V   LG ++NK++++  LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 166 --HIKGLKDMIKINLSMIP---GVKSHGDGS-----SEWRFQCPITGLEFNGKYKFFALR 225
             HIK +K++ ++ LS  P   G K +  G         RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 226 TCGHVLSAKALKEVKSSSCLVCHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEK 285
            CG V S +ALKE+K+  C  C A F + D  V+NG  E+V+ ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARMEERRLRAK-LEK 198

Query: 286 KTKKVRNGELGMNGDVNVDL-APSRL-SGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKV 345
           KTKK +  E     DV+ +   PS++ +GK     + + EK +    K   ++     K 
Sbjct: 199 KTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEETSLDSREKKNNLAPKSAATNESFSGKA 258

Query: 346 ASSNGAVKKFKASDMAPANATKEVYASIFTSSRKSD 368
                   K   +D   + A K ++ +  ++ R  +
Sbjct: 259 GKPLCGATKRSIADSEESEAYKSLFTTHSSAKRSKE 293

[Close]

BLAST of Sed0012515 vs. ExPASy TrEMBL
Match: A0A5A7SWS4 (Replication termination factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00470 PE=3 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.6e-179
Identity = 328/386 (84.97%), Postives = 347/386 (89.90%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           MHPKNQHR QIF+HSPDLQIQSK V    T A+TL+DLK SLL E+L S  ASS +FTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSTAISVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQ 120
           GKPLLDST IS+IP  STLILRTRV GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQ
Sbjct: 61  GKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQ 120

Query: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINL 180
           RLSKWLNCALSNEPL EPCVIDWLGNVFNKESLV ALLEKKLPKGFGHIKGLKDMIKIN 
Sbjct: 121 RLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKINF 180

Query: 181 SMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240
           SMIPG +S G+  SE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH
Sbjct: 181 SMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240

Query: 241 AEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPS 300
            EF +RDKFVING+EEEVEEMR RMEEEKSKSKSKEKKTKKVRNGE+GMNGDV +DLA S
Sbjct: 241 TEFTERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVTMDLATS 300

Query: 301 RLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKEVY 360
           RLSGKKHGIE++  EKVSAKPE+ E+ D G QVKVA+SNGAVK+FKA+DM PANATKEVY
Sbjct: 301 RLSGKKHGIELQTLEKVSAKPERHERLDGGAQVKVAASNGAVKRFKAADMVPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 383
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. ExPASy TrEMBL
Match: A0A0A0LTI5 (Replication termination factor 2 OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=3 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.6e-179
Identity = 329/386 (85.23%), Postives = 349/386 (90.41%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           MHPKNQHR QIF+ SPDLQI+SK V    TPA+TL+DLK SLL E L S  ASSF+FTLN
Sbjct: 1   MHPKNQHRFQIFLQSPDLQIESKIVNLPQTPAKTLEDLKFSLLTEILASRIASSFYFTLN 60

Query: 61  GKPLLDSTAISVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQ 120
           GKPLLDST IS+IP  STLILRTRV GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQ
Sbjct: 61  GKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQ 120

Query: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINL 180
           RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLV ALLEKKLPKGFGHIKGLKDMIKIN 
Sbjct: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKINF 180

Query: 181 SMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240
           SMIPG +S G+  SE R+QCP+TGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH
Sbjct: 181 SMIPGTESRGNAISEPRYQCPVTGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240

Query: 241 AEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPS 300
           AEF +RDKFVING+EEEVEEMR RMEEEKSKSKSKEKKTKKVRNGE+GMNGDV+VDLA S
Sbjct: 241 AEFAERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVSVDLAIS 300

Query: 301 RLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKEVY 360
           RLSGKKH IEVK+ EKVSAKPE+ E+ D G QVK A+SNGAVK+FKA+DM PANATKEVY
Sbjct: 301 RLSGKKHAIEVKSLEKVSAKPERQERLDGGAQVKDATSNGAVKRFKAADMVPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 383
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. ExPASy TrEMBL
Match: A0A1S3B9F3 (Replication termination factor 2 OS=Cucumis melo OX=3656 GN=LOC103487489 PE=3 SV=1)

HSP 1 Score: 637.5 bits (1643), Expect = 3.6e-179
Identity = 328/386 (84.97%), Postives = 347/386 (89.90%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           MHPKNQHR QIF+HSPDLQIQSK V    T A+TL+DLK SLL E+L S  ASS +FTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSTAISVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQ 120
           GKPLLDST IS+IP  STLILRTRV GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQ
Sbjct: 61  GKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQ 120

Query: 121 RLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINL 180
           RLSKWLNCALSNEPL EPCVIDWLGNVFNKESLV ALLEKKLPKGFGHIKGLKDMIKIN 
Sbjct: 121 RLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKINF 180

Query: 181 SMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240
           SMIPG +S G+  SE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH
Sbjct: 181 SMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCH 240

Query: 241 AEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPS 300
            EF +RDKFVING+EEEVEEMR RMEEEKSKSKSKEKKTKKVRNGE+GMNGDV +DLA S
Sbjct: 241 TEFTERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVTMDLATS 300

Query: 301 RLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKEVY 360
           RLSGKKHGIE++  EKVSAKPE+ E+ D G QVKVA+SNGAVK+FKA+DM PANATKEVY
Sbjct: 301 RLSGKKHGIELQTLEKVSAKPERHERLDGGAQVKVAASNGAVKRFKAADMVPANATKEVY 360

Query: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 383
           ASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 ASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. ExPASy TrEMBL
Match: A0A6J1F067 (Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111440971 PE=3 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 5.9e-174
Identity = 325/388 (83.76%), Postives = 345/388 (88.92%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           M+PKNQHR Q FVHSPDLQIQSK V    T AQ+L DLK SL+  +  S  ASSF+FTLN
Sbjct: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60

Query: 61  GKPLLDSTAI--SVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPN 120
           GKPLLDS  I  S++P  STLILRTRV GGGGDGGATGAESRDCYLKMY EKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKE LVHALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSM+PG +S G+  SE RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMVPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLA 300
           CHAEF DRDKFVING+EEEV  MR RMEEE  K+KSKEKKTKKVR GE+GMNGDV+VDLA
Sbjct: 241 CHAEFMDRDKFVINGSEEEVVRMRERMEEE--KTKSKEKKTKKVRTGEVGMNGDVSVDLA 300

Query: 301 PSRLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKE 360
            SRLSGKKHGIE KA  KVSAKPEK E+ D+GVQVKVA+SNGAVK+FKA+DMAPANATKE
Sbjct: 301 SSRLSGKKHGIEGKALGKVSAKPEKHERPDSGVQVKVAASNGAVKRFKAADMAPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 383
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. ExPASy TrEMBL
Match: A0A6J1KUM3 (Replication termination factor 2 OS=Cucurbita maxima OX=3661 GN=LOC111498815 PE=3 SV=1)

HSP 1 Score: 615.9 bits (1587), Expect = 1.1e-172
Identity = 324/388 (83.51%), Postives = 344/388 (88.66%), Query Frame = 0


Query: 1   MHPKNQHRRQIFVHSPDLQIQSKFV----TPAQTLDDLKSSLLPESLPSPAASSFFFTLN 60
           M+PKNQHR Q FV SPDLQIQSK V    T AQ+L DLK SLL  +  S  ASSF+FTLN
Sbjct: 1   MYPKNQHRLQFFVRSPDLQIQSKIVNLAQTSAQSLADLKLSLLLNAPASRLASSFYFTLN 60

Query: 61  GKPLLDSTAI--SVIPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPN 120
           GKPLLDS  I  S++P  STLILRTRV GGGGDGGATGAESRDCYLKMY EKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKESLVHALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSMIPGVKSHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSMIPG +S G+  SE RFQCPITGLEFNGKYKFFALR CGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMIPGTESRGNEISEARFQCPITGLEFNGKYKFFALRACGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFNDRDKFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLA 300
           CHAEF DRDKFVING+EEEV  MR RMEEE  K+K+KEKKTKKVR GE+GMNGDV+VDLA
Sbjct: 241 CHAEFMDRDKFVINGSEEEVVRMRERMEEE--KTKAKEKKTKKVRTGEVGMNGDVSVDLA 300

Query: 301 PSRLSGKKHGIEVKASEKVSAKPEKLEQSDNGVQVKVASSNGAVKKFKASDMAPANATKE 360
            SRLSGKKHGIE KA  K+SAKPEK E+ D+GVQVKVA+SNGAVK+FKA+DMAPANATKE
Sbjct: 301 SSRLSGKKHGIEGKALGKISAKPEKHERPDSGVQVKVAASNGAVKRFKAADMAPANATKE 360

Query: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 383
           VYASIFTSSRKSDFKETYSCRSLPLGRN
Sbjct: 361 VYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Sed0012515 vs. TAIR 10
Match: AT5G58020.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). )

HSP 1 Score: 382.9 bits (982), Expect = 3.1e-106
Identity = 223/381 (58.53%), Postives = 259/381 (67.98%), Query Frame = 0


Query: 8   RRQIFVHSPDLQ-IQSKFVTPAQTLDDLKS-SLLPESLPSPAASSFFFTLNGKPLLDSTA 67
           RRQIFV SPD Q + +  + PAQ+L  L   + L ES    + S+   TL+GK L  ST 
Sbjct: 4   RRQIFVKSPDCQKVVALQLDPAQSLLTLSGITSLLESSQRISFSACSITLDGKLLNGSTR 63

Query: 68  ISV--IPQWSTLILRTRVCGGGGDGGATGAESRDCYLKMYQEKKPDKVDPNEQRLSKWLN 127
           I V  +P  S L L  R+ GGGGDGGATGAESRDCYL MY EKKPDKVDPNEQRLSKWLN
Sbjct: 64  IQVSKLPSVSMLTLFPRLRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWLN 123

Query: 128 CALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKINLSMIPGVK 187
           CALSNEPL EPCVID LGN+FNKE LVHALL K+LPK F +IKGLKDM+ I L+ + G  
Sbjct: 124 CALSNEPLAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYIKGLKDMVNIKLTPVAGSD 183

Query: 188 SHGDGSSEWRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFNDRD 247
                ++  +FQCP++GLEFNGKYKFFALR CGHV+SAKALKEVKSSSCLVCHA+  D D
Sbjct: 184 GSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHADVKDSD 243

Query: 248 KFVINGNEEEVEEMRVRMEEEKSKSKSKEKKTKKVRNGELGMNGDVNVDLAPSRLSGKKH 307
           K VING EEEV+ +R RMEEEK+K + K+  +KK +NG                      
Sbjct: 244 KIVINGTEEEVDLLRERMEEEKAKLREKKGVSKKSKNG---------------------- 303

Query: 308 GIEVKASEKVSAKPEKLEQSDNGVQVKVASSNG-AVKKFKASDMAPANATKEVYASIFTS 367
                      AK  K +  D  V     + NG  VKKFKA+D  P NATKEVYAS+FTS
Sbjct: 304 ---AAVVADTGAKVAKRQIEDGNV-----NGNGITVKKFKAADKVPVNATKEVYASLFTS 354

Query: 368 S-RKSDFKETYSCRSLPLGRN 383
           S +KSDF+ETYSCRSLPLGRN
Sbjct: 364 SKKKSDFRETYSCRSLPLGRN 354

The following BLAST results are available for this feature:

BLAST of Sed0012515 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444038.1	7.4e-179	84.97	PREDICTED: protein RTF2 homolog [Cucumis melo] >KAA0035058.1 protein RTF2-like p...	[more]
XP_011655923.1	7.4e-179	85.23	replication termination factor 2 [Cucumis sativus] >KGN65240.1 hypothetical prot...	[more]
XP_038879920.1	3.7e-178	84.79	replication termination factor 2 [Benincasa hispida]	[more]
XP_022933589.1	1.2e-173	83.76	protein RTF2 homolog [Cucurbita moschata]	[more]
XP_023531451.1	1.0e-172	83.51	protein RTF2 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0012515 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T1J8	3.2e-31	36.40	Replication termination factor 2 OS=Rattus norvegicus OX=10116 GN=Rtf2 PE=2 SV=1	[more]
Q9BY42	4.6e-30	35.09	Replication termination factor 2 OS=Homo sapiens OX=9606 GN=RTF2 PE=1 SV=3	[more]
Q5R9P9	4.6e-30	35.44	Replication termination factor 2 OS=Pongo abelii OX=9601 GN=RTF2 PE=2 SV=1	[more]
Q99K95	6.0e-30	35.53	Replication termination factor 2 OS=Mus musculus OX=10090 GN=Rtf2 PE=1 SV=1	[more]
Q4R594	1.0e-29	32.97	Replication termination factor 2 OS=Macaca fascicularis OX=9541 GN=RTF2 PE=2 SV=...	[more]

BLAST of Sed0012515 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWS4	3.6e-179	84.97	Replication termination factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LTI5	3.6e-179	85.23	Replication termination factor 2 OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=3...	[more]
A0A1S3B9F3	3.6e-179	84.97	Replication termination factor 2 OS=Cucumis melo OX=3656 GN=LOC103487489 PE=3 SV...	[more]
A0A6J1F067	5.9e-174	83.76	Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111440971 P...	[more]
A0A6J1KUM3	1.1e-172	83.51	Replication termination factor 2 OS=Cucurbita maxima OX=3661 GN=LOC111498815 PE=...	[more]

BLAST of Sed0012515 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58020.1	3.1e-106	58.53	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..274
None	No IPR available	PFAM	PF04641	Rtf2	coord: 84..366 e-value: 6.6E-74 score: 248.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..281
None	No IPR available	PANTHER	PTHR12775:SF1	BNACNNG39770D PROTEIN	coord: 328..382
None	No IPR available	PANTHER	PTHR12775:SF1	BNACNNG39770D PROTEIN	coord: 7..285
IPR006735	Replication termination factor 2	PANTHER	PTHR12775	PROTEIN C20ORF43 HOMOLOG	coord: 328..382
IPR006735	Replication termination factor 2	PANTHER	PTHR12775	PROTEIN C20ORF43 HOMOLOG	coord: 7..285
IPR027799	Replication termination factor 2, RING-finger	CDD	cd16653	RING-like_Rtf2	coord: 194..239 e-value: 4.64041E-26 score: 96.9263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012515.1	Sed0012515.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902979	mitotic DNA replication termination
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity