PI0024650 (gene) Melon (PI 482460) v1

Overview


Name	PI0024650
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr06: 12942665 .. 12943476 (+)
RNA-Seq Expression	PI0024650
Synteny	PI0024650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCAACCCCAGCCTCAAATGCAAACCAAATTGTTCGGGAAGCATTCAATCGATGGGTCAAAGCTAATGAAAAAGCTTGTGTCTATATTCTCGCCAACATGACAGATGTATTTTCGAAGAAACATGAATCCTTAACCGTGGCTAAAGCGATTATGAATTCATTATGGGAAATGTTTGGGCAACCGCCATACTCCCTAAGACACAAAGCTATAAAACAGATTTATACAAAGCGAATGAAGGAAGGGACCTCTGTTAGGGAACATGTTCTGTTCCTGGACATGATGATGCACTTCAACATCGACGAGGTAAATAGTGGACCCATTGATGAGGCTAATCAGGTTAGCTATCTTACAATCTCTTCCAAAGAGTTTTGTACCATTTTAAACGAACGTGTCACTAAATAAGATAAAGTTCAACTTGACCATTCTTCTCAATGAGCTCCAACGGTTCTAAACTCGTACTCTGGGTAAGGGAAAGGAAGTGGAAGCAAATGTTGTTACCACTAAAAAGAAGTTTTTAAGAGGATCGTCCTCTAACAAAACTGGACCACCAAATCCAAATGCTCAAACTAAGAAGAATGGTAAGGGGAAAACTCCCAAGACGAGTGATAACTTGTAGAAATACAAGTTATTGTAACATTTTAGGCGAGACAATGAAGTCAAAATGCGGAATAAATGGTCTTAACGCGTACTTTGTAGAGTAAATCTATCATAATAAGAGAATGAGCTTTGCATAAGTCATCACTCCTGATTAACTATGTTTTTAGTGTTTTTGTACGCAGGATGACGAAAAGAAGAAAAGAATGTGA

mRNA sequence

ATGTCTTCAACCCCAGCCTCAAATGCAAACCAAATTGTTCGGGAAGCATTCAATCGATGGGTCAAAGCTAATGAAAAAGCTTGTGTCTATATTCTCGCCAACATGACAGATGTATTTTCGAAGAAACATGAATCCTTAACCGTGGCTAAAGCGATTATGAATTCATTATGGGAAATGTTTGGGCAACCGCCATACTCCCTAAGACACAAAGCTATAAAACAGATTTATACAAAGCGAATGAAGGAAGGGACCTCTGTTAGGGAACATGTTCTGTTCCTGGACATGATGATGCACTTCAACATCGACGAGGTAAATAGTGGACCCATTGATGAGGCTAATCAGGATGACGAAAAGAAGAAAAGAATGTGA

Coding sequence (CDS)

ATGTCTTCAACCCCAGCCTCAAATGCAAACCAAATTGTTCGGGAAGCATTCAATCGATGGGTCAAAGCTAATGAAAAAGCTTGTGTCTATATTCTCGCCAACATGACAGATGTATTTTCGAAGAAACATGAATCCTTAACCGTGGCTAAAGCGATTATGAATTCATTATGGGAAATGTTTGGGCAACCGCCATACTCCCTAAGACACAAAGCTATAAAACAGATTTATACAAAGCGAATGAAGGAAGGGACCTCTGTTAGGGAACATGTTCTGTTCCTGGACATGATGATGCACTTCAACATCGACGAGGTAAATAGTGGACCCATTGATGAGGCTAATCAGGATGACGAAAAGAAGAAAAGAATGTGA

Protein sequence

MSSTPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQDDEKKKRM

Homology

[Close]

BLAST of PI0024650 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 5   PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPP 64
           PA NAN+ VREA++RWVKAN+KA VYILA+MTDV +KKH+S+  AK IM+SL EMFGQP 
Sbjct: 47  PALNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPS 106

Query: 65  YSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
           +SLRH+AIK IYTKRMKEGTSVREHV  LDMMMHFNI EVN GPIDEANQ
Sbjct: 107 WSLRHEAIKHIYTKRMKEGTSVREHV--LDMMMHFNIAEVNGGPIDEANQ 154

[Close]

BLAST of PI0024650 vs. ExPASy TrEMBL
Match: A0A5D3BDN4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold791G00050 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 82/111 (73.87%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 4   TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQP 63
           TPASNAN+  R+A++RW+KANEKACV+ILA+M+DV +KKHESL + K IM+SL  MFGQP
Sbjct: 11  TPASNANRASRKAYDRWIKANEKACVFILASMSDVLAKKHESLAMTKEIMDSLKGMFGQP 70

Query: 64  PYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
             SLRH+AIK IYTKRMKEGTS+REHV  LDMMMHFNI EVN G IDEANQ
Sbjct: 71  KLSLRHEAIKYIYTKRMKEGTSIREHV--LDMMMHFNIAEVNGGAIDEANQ 119

[Close]

BLAST of PI0024650 vs. ExPASy TrEMBL
Match: A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.8e-37
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 4   TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQP 63
           TPASNAN+  REA++RW+KANEKA VYILA+M+DV +KKHESL  AK IM+SL  MFGQP
Sbjct: 46  TPASNANRTSREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQP 105

Query: 64  PYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
            +SLRHKAIK IYTKRMKEGTS+REHVL+  MM+HFNI EVN G IDEANQ
Sbjct: 106 KWSLRHKAIKYIYTKRMKEGTSIREHVLY--MMIHFNIAEVNGGAIDEANQ 154

[Close]

BLAST of PI0024650 vs. ExPASy TrEMBL
Match: A0A5A7U2U6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00570 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-37
Identity = 88/119 (73.95%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 4   TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQP 63
           TPASNANQ VREA++RWVKANEKA VYI A+M+DV +KKHESL  AK IM+SL EMFGQP
Sbjct: 46  TPASNANQNVREAYDRWVKANEKARVYIFASMSDVLAKKHESLATAKEIMDSLREMFGQP 105

Query: 64  PYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQDDEKKKRM 123
            +SLRH+AIK IYTK+MKEGTSVREHV  LDMMMHFNI EVN GPI+E N    K K M
Sbjct: 106 SWSLRHEAIKYIYTKQMKEGTSVREHV--LDMMMHFNIAEVNGGPINE-NLTMSKGKEM 161

[Close]

BLAST of PI0024650 vs. ExPASy TrEMBL
Match: A0A5D3BLU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00990 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.3e-37
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 4   TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQP 63
           TPASNAN+  REA++RW+KANEKACV ILA+M+DV  KKHESL +AK IMNSL  MF QP
Sbjct: 45  TPASNANRTNREAYDRWIKANEKACVCILASMSDVLVKKHESLAMAKEIMNSLRAMFWQP 104

Query: 64  PYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQDDEKKKRM 123
            +SLRHKAIK IYTKRMKE TSVREHV  LDMM+HFNI EVN   IDEANQ++   KR+
Sbjct: 105 EWSLRHKAIKYIYTKRMKEETSVREHV--LDMMIHFNIAEVNGSAIDEANQENSSWKRL 161

[Close]

BLAST of PI0024650 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 5   PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPP 64
           PA NAN+ VREA++RWVKAN+KA VYILA+MTDV +KKH+S+  AK IM+SL EMFGQP 
Sbjct: 47  PALNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPS 106

Query: 65  YSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
           +SLRH+AIK IYTKRMKEGTSVREHV  LDMMMHFNI EVN GPIDEANQ
Sbjct: 107 WSLRHEAIKHIYTKRMKEGTSVREHV--LDMMMHFNIAEVNGGPIDEANQ 154

[Close]

BLAST of PI0024650 vs. NCBI nr
Match: XP_038891685.1 (uncharacterized protein LOC120081079 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-38
Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 5   PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPP 64
           PASNAN+ VREA++RWVKANEKACVYILA+M+DV +KKHESL  AK I++SL EMFGQ  
Sbjct: 47  PASNANRTVREAYDRWVKANEKACVYILASMSDVLAKKHESLATAKEIIDSLREMFGQLS 106

Query: 65  YSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
           +SLRH+AIK IYTKRMKEGTSVREHV  LDMMM+FNI +VN GPIDEANQ
Sbjct: 107 WSLRHEAIKHIYTKRMKEGTSVREHV--LDMMMYFNIAKVNGGPIDEANQ 154

[Close]

BLAST of PI0024650 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 5   PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPP 64
           P SNAN+ VREA++RWVKANEKA +YILA+M+DV +KKHESL  AK I++SL E+FGQP 
Sbjct: 47  PTSNANRTVREAYDRWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRELFGQPS 106

Query: 65  YSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQD 116
           +SLRH+AIK IYTKRMKEGTSVREHV  LDMMM+FNI E N GPIDEANQD
Sbjct: 107 WSLRHEAIKHIYTKRMKEGTSVREHV--LDMMMYFNIAEANGGPIDEANQD 155

[Close]

BLAST of PI0024650 vs. NCBI nr
Match: TYJ96575.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 4.5e-37
Identity = 82/111 (73.87%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 4   TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQP 63
           TPASNAN+  R+A++RW+KANEKACV+ILA+M+DV +KKHESL + K IM+SL  MFGQP
Sbjct: 11  TPASNANRASRKAYDRWIKANEKACVFILASMSDVLAKKHESLAMTKEIMDSLKGMFGQP 70

Query: 64  PYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
             SLRH+AIK IYTKRMKEGTS+REHV  LDMMMHFNI EVN G IDEANQ
Sbjct: 71  KLSLRHEAIKYIYTKRMKEGTSIREHV--LDMMMHFNIAEVNGGAIDEANQ 119

[Close]

BLAST of PI0024650 vs. NCBI nr
Match: KAA0048103.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 5.9e-37
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 4   TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQP 63
           TPASNAN+  REA++RW+KANEKA VYILA+M+DV +KKHESL  AK IM+SL  MFGQP
Sbjct: 46  TPASNANRTSREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQP 105

Query: 64  PYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPIDEANQ 115
            +SLRHKAIK IYTKRMKEGTS+REHVL+  MM+HFNI EVN G IDEANQ
Sbjct: 106 KWSLRHKAIKYIYTKRMKEGTSIREHVLY--MMIHFNIAEVNGGAIDEANQ 154

The following BLAST results are available for this feature:

BLAST of PI0024650 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	8.8e-39	77.27	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3BDN4	2.2e-37	73.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold791G0005...	[more]
A0A5A7TWX1	2.8e-37	74.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018...	[more]
A0A5A7U2U6	8.3e-37	73.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G0057...	[more]
A0A5D3BLU7	8.3e-37	71.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G0099...	[more]

BLAST of PI0024650 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.8e-38	77.27	gag/pol protein, partial [Bryonia dioica]	[more]
XP_038891685.1	4.1e-38	77.27	uncharacterized protein LOC120081079 [Benincasa hispida]	[more]
XP_038882358.1	1.5e-37	74.77	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]
TYJ96575.1	4.5e-37	73.87	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048103.1	5.9e-37	74.77	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0024650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 14..114
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 14..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024650.1	PI0024650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding