MS019874 (gene) Bitter gourd (TR) v1

Overview
NameMS019874
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionp55
Locationscaffold22: 147967 .. 148386 (+)
RNA-Seq ExpressionMS019874
SyntenyMS019874
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGAGTATCACCGTGAACATAGCAGCCGCGGGCTCCATTCTCCCCCAGCATCGCCCTCCAAATTAGACTCACCACGCCAAAAATACCCTTCCAATAATTACCGCCCAGTCCCAGTAACGCCGACGATTAACACTCCCAAGCCCCGTGATGCAAAGAGGAGACGGAGCCCCAGCCCCAGCGAGCGTGATCAGCCTCCAACCAACAGGCAACGAACCGACAGGGCCGATGATGGCCAGAAGGTGGAGTTGGGTGAGGGAGGCTCTACTTTTTCATTGTATGGTCTGATGGTGAACATGGAGCACATGGCTAAGATGGTGCGGAGGGCAGATTTTGATTTGAGGAGTGATCCTGTGCTGGCTTGCCTTGTGTCGGCGCAGGCTGTGATGATGGCCTGCACCGCCGACCTCATCTCCAGG

mRNA sequence

ATGGGCGAGTATCACCGTGAACATAGCAGCCGCGGGCTCCATTCTCCCCCAGCATCGCCCTCCAAATTAGACTCACCACGCCAAAAATACCCTTCCAATAATTACCGCCCAGTCCCAGTAACGCCGACGATTAACACTCCCAAGCCCCGTGATGCAAAGAGGAGACGGAGCCCCAGCCCCAGCGAGCGTGATCAGCCTCCAACCAACAGGCAACGAACCGACAGGGCCGATGATGGCCAGAAGGTGGAGTTGGGTGAGGGAGGCTCTACTTTTTCATTGTATGGTCTGATGGTGAACATGGAGCACATGGCTAAGATGGTGCGGAGGGCAGATTTTGATTTGAGGAGTGATCCTGTGCTGGCTTGCCTTGTGTCGGCGCAGGCTGTGATGATGGCCTGCACCGCCGACCTCATCTCCAGG

Coding sequence (CDS)

ATGGGCGAGTATCACCGTGAACATAGCAGCCGCGGGCTCCATTCTCCCCCAGCATCGCCCTCCAAATTAGACTCACCACGCCAAAAATACCCTTCCAATAATTACCGCCCAGTCCCAGTAACGCCGACGATTAACACTCCCAAGCCCCGTGATGCAAAGAGGAGACGGAGCCCCAGCCCCAGCGAGCGTGATCAGCCTCCAACCAACAGGCAACGAACCGACAGGGCCGATGATGGCCAGAAGGTGGAGTTGGGTGAGGGAGGCTCTACTTTTTCATTGTATGGTCTGATGGTGAACATGGAGCACATGGCTAAGATGGTGCGGAGGGCAGATTTTGATTTGAGGAGTGATCCTGTGCTGGCTTGCCTTGTGTCGGCGCAGGCTGTGATGATGGCCTGCACCGCCGACCTCATCTCCAGG

Protein sequence

MGEYHREHSSRGLHSPPASPSKLDSPRQKYPSNNYRPVPVTPTINTPKPRDAKRRRSPSPSERDQPPTNRQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFDLRSDPVLACLVSAQAVMMACTADLISR
Homology
BLAST of MS019874 vs. NCBI nr
Match: KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 0

Query: 2   GEYHREHSSRGLHSPPASPSKLDSPRQKYPSNNYRPVPVTPTINTPKPRDAKRRRSP-SP 61
           GE +  H   G+ +PP+SPSK ++P  K+P  +     V P   TP P   K+R +P SP
Sbjct: 3   GELNLAH---GIFNPPSSPSKKNTP--KFPGRS----SVEP--QTPDPVHGKKRPAPVSP 62

Query: 62  S---ERDQPPTNRQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRA---DFDL 121
           +   + D+PPT +++TD A++G         S   +  L+  +E M KM++R       L
Sbjct: 63  NDDFQHDRPPTQKRKTDNAEEG-------SSSDVPMKDLIEKVEDMVKMLKRVGRKKDKL 122

Query: 122 RSDPVLACLVSAQAVMMACTADLISR 141
            SDP+LAC VSAQA++ ACTA+LISR
Sbjct: 123 VSDPLLACFVSAQALLTACTAELISR 130

BLAST of MS019874 vs. NCBI nr
Match: KAG6584107.1 (hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 0

Query: 25  SPRQKYPSNNYRPVPVTPTINTPKPRDAKRRRSPSP--SERDQPPTNRQRTDRADDGQKV 84
           SPR    S    P+   P   TP  R +++R +PSP  +   +PPT R+R   + DG K+
Sbjct: 18  SPRPSTDSKETEPIS-PPNPVTPNLRGSRKRSAPSPMSNPEHEPPTQRRRD--SGDGNKL 77

Query: 85  ELGEGG--STFSLYGLMVNMEHMAKMVRR--ADFDLRSDPVLACLVSAQAVMMACTADLI 141
           E GE    S+  L  L+ NME + K ++R      L  DP+L CLVS+Q  MM C A LI
Sbjct: 78  EYGEDADWSSIPLARLIGNMEEVVKSLKRVGGQEGLMIDPLLGCLVSSQTSMMLCLAHLI 136

BLAST of MS019874 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 0

Query: 13  LHSPPASPSKLDSPRQKYPSNNYRPVPVTPTINTPKPRDAKRRRSPSP---SERDQPPTN 72
           + +PP SP + ++P+    S+     P TP     K    KR  S SP   SE D PPT 
Sbjct: 13  IFNPPLSPGRKNAPKVTESSS---VEPHTPDAVLGK----KRPASVSPNDVSEHDHPPTQ 72

Query: 73  RQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFDLRSDPVLACLVSAQAV 132
           + +TD A+         G     L G + +M  M K V R +  L SDP+LAC VSAQ +
Sbjct: 73  KPKTDNAEKAS----SSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQTL 132

Query: 133 MMACTADLISR 141
           +MACTA+L+S+
Sbjct: 133 LMACTAELLSK 132

BLAST of MS019874 vs. ExPASy TrEMBL
Match: A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 0

Query: 2   GEYHREHSSRGLHSPPASPSKLDSPRQKYPSNNYRPVPVTPTINTPKPRDAKRRRSP-SP 61
           GE +  H   G+ +PP+SPSK ++P  K+P  +     V P   TP P   K+R +P SP
Sbjct: 3   GELNLAH---GIFNPPSSPSKKNTP--KFPGRS----SVEP--QTPDPVHGKKRPAPVSP 62

Query: 62  S---ERDQPPTNRQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRA---DFDL 121
           +   + D+PPT +++TD A++G         S   +  L+  +E M KM++R       L
Sbjct: 63  NDDFQHDRPPTQKRKTDNAEEG-------SSSDVPMKDLIEKVEDMVKMLKRVGRKKDKL 122

Query: 122 RSDPVLACLVSAQAVMMACTADLISR 141
            SDP+LAC VSAQA++ ACTA+LISR
Sbjct: 123 VSDPLLACFVSAQALLTACTAELISR 130

BLAST of MS019874 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 0

Query: 13  LHSPPASPSKLDSPRQKYPSNNYRPVPVTPTINTPKPRDAKRRRSPSP---SERDQPPTN 72
           + +PP SP + ++P+    S+     P TP     K    KR  S SP   SE D PPT 
Sbjct: 13  IFNPPLSPGRKNAPKVTESSS---VEPHTPDAVLGK----KRPASVSPNDVSEHDHPPTQ 72

Query: 73  RQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFDLRSDPVLACLVSAQAV 132
           + +TD A+         G     L G + +M  M K V R +  L SDP+LAC VSAQ +
Sbjct: 73  KPKTDNAEKAS----SSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQTL 132

Query: 133 MMACTADLISR 141
           +MACTA+L+S+
Sbjct: 133 LMACTAELLSK 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64496.11.3e-0839.73hypothetical protein Csa_013860 [Cucumis sativus][more]
KAG6584107.11.8e-0540.16hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056836.13.1e-0538.17p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LX146.4e-0939.73p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1[more]
A0A5D3BJN21.5e-0538.17p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019874.1MS019874.1mRNA