MS015341 (gene) Bitter gourd (TR) v1

Overview
NameMS015341
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFYR C-terminal domain-containing protein
Locationscaffold2: 2712235 .. 2712432 (+)
RNA-Seq ExpressionMS015341
SyntenyMS015341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTCAAAAAACACTGAGGAACATTGGTCACTTCAGTCAAAGGACAATGCCATATGGCTTTTAGCCTTAACCATATCTGATTCTTATGATTCGCATGACTATCCACCAAATGATTGTCAGATAAATCATGAAGGATTATGGAAACTAGCTCTACTTGTTAACAACACGGTTACATTTGGTGCAGAGCTGGATTTGAGG

mRNA sequence

AGCTCAAAAAACACTGAGGAACATTGGTCACTTCAGTCAAAGGACAATGCCATATGGCTTTTAGCCTTAACCATATCTGATTCTTATGATTCGCATGACTATCCACCAAATGATTGTCAGATAAATCATGAAGGATTATGGAAACTAGCTCTACTTGTTAACAACACGGTTACATTTGGTGCAGAGCTGGATTTGAGG

Coding sequence (CDS)

AGCTCAAAAAACACTGAGGAACATTGGTCACTTCAGTCAAAGGACAATGCCATATGGCTTTTAGCCTTAACCATATCTGATTCTTATGATTCGCATGACTATCCACCAAATGATTGTCAGATAAATCATGAAGGATTATGGAAACTAGCTCTACTTGTTAACAACACGGTTACATTTGGTGCAGAGCTGGATTTGAGG

Protein sequence

SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFGAELDLR
Homology
[Close]
BLAST of MS015341 vs. NCBI nr
Match: XP_022150652.1 (uncharacterized protein LOC111018735 isoform X1 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 8.1e-25
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SSKNTEEH SLQ KD AIWLLA TISDSYDSHDY PNDCQINHEGLWKLALL N+TVTFG
Sbjct: 1118 SSKNTEEHSSLQPKDTAIWLLASTISDSYDSHDYLPNDCQINHEGLWKLALLANSTVTFG 1177

Query: 61   AELDLR 67
             E+DLR
Sbjct: 1178 TEMDLR 1183

[Close]
BLAST of MS015341 vs. NCBI nr
Match: XP_023542997.1 (uncharacterized protein LOC111802747 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1   SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
           SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 867 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 926

Query: 61  AELDLR 67
           AELDLR
Sbjct: 927 AELDLR 932

[Close]
BLAST of MS015341 vs. NCBI nr
Match: XP_022968243.1 (uncharacterized protein LOC111467538 isoform X1 [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 1078 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 1137

Query: 61   AELDLR 67
            AELDLR
Sbjct: 1138 AELDLR 1143

[Close]
BLAST of MS015341 vs. NCBI nr
Match: XP_023542998.1 (uncharacterized protein LOC111802747 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1   SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
           SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 866 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 925

Query: 61  AELDLR 67
           AELDLR
Sbjct: 926 AELDLR 931

[Close]
BLAST of MS015341 vs. NCBI nr
Match: XP_022968244.1 (uncharacterized protein LOC111467538 isoform X2 [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 1078 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 1137

Query: 61   AELDLR 67
            AELDLR
Sbjct: 1138 AELDLR 1143

[Close]
BLAST of MS015341 vs. ExPASy TrEMBL
Match: A0A6J1DBA8 (uncharacterized protein LOC111018735 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018735 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-25
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SSKNTEEH SLQ KD AIWLLA TISDSYDSHDY PNDCQINHEGLWKLALL N+TVTFG
Sbjct: 1118 SSKNTEEHSSLQPKDTAIWLLASTISDSYDSHDYLPNDCQINHEGLWKLALLANSTVTFG 1177

Query: 61   AELDLR 67
             E+DLR
Sbjct: 1178 TEMDLR 1183

[Close]
BLAST of MS015341 vs. ExPASy TrEMBL
Match: A0A6J1HZ35 (uncharacterized protein LOC111467538 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467538 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 1078 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 1137

Query: 61   AELDLR 67
            AELDLR
Sbjct: 1138 AELDLR 1143

[Close]
BLAST of MS015341 vs. ExPASy TrEMBL
Match: A0A6J1HWP5 (uncharacterized protein LOC111467538 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467538 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1   SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
           SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 866 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 925

Query: 61  AELDLR 67
           AELDLR
Sbjct: 926 AELDLR 931

[Close]
BLAST of MS015341 vs. ExPASy TrEMBL
Match: A0A6J1HXG7 (uncharacterized protein LOC111467538 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467538 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 1078 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 1137

Query: 61   AELDLR 67
            AELDLR
Sbjct: 1138 AELDLR 1143

[Close]
BLAST of MS015341 vs. ExPASy TrEMBL
Match: A0A6J1G291 (uncharacterized protein LOC111449993 OS=Cucurbita moschata OX=3662 GN=LOC111449993 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1    SSKNTEEHWSLQSKDNAIWLLALTISDSYDSHDYPPNDCQINHEGLWKLALLVNNTVTFG 60
            SS   +EH SLQ KD AIWL A T SDS D H+Y P  CQ NH  LWKL LL N+TVTFG
Sbjct: 1078 SSMIPDEHSSLQLKDTAIWLFASTTSDSNDPHNYLPTGCQKNHAELWKLMLLANSTVTFG 1137

Query: 61   AELDLR 67
            AELDLR
Sbjct: 1138 AELDLR 1143

The following BLAST results are available for this feature:
BLAST of MS015341 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150652.18.1e-2586.36uncharacterized protein LOC111018735 isoform X1 [Momordica charantia][more]
XP_023542997.17.6e-1566.67uncharacterized protein LOC111802747 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022968243.17.6e-1566.67uncharacterized protein LOC111467538 isoform X1 [Cucurbita maxima][more]
XP_023542998.17.6e-1566.67uncharacterized protein LOC111802747 isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_022968244.17.6e-1566.67uncharacterized protein LOC111467538 isoform X2 [Cucurbita maxima][more]
BLAST of MS015341 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS015341 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DBA83.9e-2586.36uncharacterized protein LOC111018735 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1HZ353.7e-1566.67uncharacterized protein LOC111467538 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HWP53.7e-1566.67uncharacterized protein LOC111467538 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HXG73.7e-1566.67uncharacterized protein LOC111467538 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G2913.7e-1566.67uncharacterized protein LOC111449993 OS=Cucurbita moschata OX=3662 GN=LOC1114499... [more]
BLAST of MS015341 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015341.1MS015341.1mRNA