MS015270 (gene) Bitter gourd (TR) v1

Overview
NameMS015270
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
Locationscaffold2: 2182129 .. 2182497 (-)
RNA-Seq ExpressionMS015270
SyntenyMS015270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCATTGTACGTCGTTAACGAATTCCAGAGCCATCCAAGGACGAATCGCTCGACGAACTTTGGGGAGATGATCTTGAGTCTTACATTTCAGGCCGCCATTGGATTGGTCGTTTCTTCACAGATTCCACCTTCTCTGTCCCTACAGATTGCAGAGGTAATGGTGGTGATAAGCTTTGGAGTTTCGTTTTGTGGCGTTACTCTTCGAAATTCCTTTCCGAGATTCGGAAACAAACTCGAGAAATTTGGTTCGGTTTTAACCTGCATTATCTTCTTCCTAATGGCGACCGCCTTCCTTCCGGCGAGGTTTTGCTGGATAAGTTGGCCGGTGTTTGCTCTGTCAATGGCGGCCTTCTCATTCTCGCTCTTC

mRNA sequence

CTTCCATTGTACGTCGTTAACGAATTCCAGAGCCATCCAAGGACGAATCGCTCGACGAACTTTGGGGAGATGATCTTGAGTCTTACATTTCAGGCCGCCATTGGATTGGTCGTTTCTTCACAGATTCCACCTTCTCTGTCCCTACAGATTGCAGAGGTAATGGTGGTGATAAGCTTTGGAGTTTCGTTTTGTGGCGTTACTCTTCGAAATTCCTTTCCGAGATTCGGAAACAAACTCGAGAAATTTGGTTCGGTTTTAACCTGCATTATCTTCTTCCTAATGGCGACCGCCTTCCTTCCGGCGAGGTTTTGCTGGATAAGTTGGCCGGTGTTTGCTCTGTCAATGGCGGCCTTCTCATTCTCGCTCTTC

Coding sequence (CDS)

CTTCCATTGTACGTCGTTAACGAATTCCAGAGCCATCCAAGGACGAATCGCTCGACGAACTTTGGGGAGATGATCTTGAGTCTTACATTTCAGGCCGCCATTGGATTGGTCGTTTCTTCACAGATTCCACCTTCTCTGTCCCTACAGATTGCAGAGGTAATGGTGGTGATAAGCTTTGGAGTTTCGTTTTGTGGCGTTACTCTTCGAAATTCCTTTCCGAGATTCGGAAACAAACTCGAGAAATTTGGTTCGGTTTTAACCTGCATTATCTTCTTCCTAATGGCGACCGCCTTCCTTCCGGCGAGGTTTTGCTGGATAAGTTGGCCGGTGTTTGCTCTGTCAATGGCGGCCTTCTCATTCTCGCTCTTC

Protein sequence

LPLYVVNEFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPSLSLQIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSFSLF
Homology
BLAST of MS015270 vs. NCBI nr
Match: OMO72209.1 (hypothetical protein COLO4_27768 [Corchorus olitorius])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-12
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 8   EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVS--SQIPPSLSLQIAEVMVVISFGVSFCG 67
           E QS+ +   S N G+ I+SLTFQ  + L +S        LS+QI +V ++++F  SF G
Sbjct: 33  EMQSYQQRPNSANLGKTIMSLTFQVVVALALSMGQSHHQLLSIQIVKVSMIMAFAASFSG 92

Query: 68  VTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 109
           + LRNS+P+    +E  GS+   + FF+M + FLP +F W++W
Sbjct: 93  IFLRNSYPKSARIVENTGSIAAAVGFFIMTSIFLPVKFSWVAW 135

BLAST of MS015270 vs. NCBI nr
Match: XP_021293273.1 (uncharacterized protein LOC110423379 isoform X1 [Herrania umbratica])

HSP 1 Score: 80.9 bits (198), Expect = 8.6e-12
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 0

Query: 1   LPLYV-VNEFQSHPRTNR-STNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMV 60
           +PLY+  +E + H    R   + G+ ILSL+FQ  + L  SS +  +   L +   ++ +
Sbjct: 80  IPLYINYSEIEMHSYQPRPPVSLGKTILSLSFQIVVALAPSSSMGQAHHLLPIDFVKISM 139

Query: 61  VISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSM 120
           +++F  SF G+ LR+S+P+  N +E  GS++  + FF+M + FLP  F W++W   A S+
Sbjct: 140 IMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNFSWVNWLACAFSL 199

Query: 121 AAFSFSL 123
            AF  SL
Sbjct: 200 LAFFSSL 206

BLAST of MS015270 vs. NCBI nr
Match: EOY01534.1 (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 8   EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMVVISFGVSFC 67
           E QS+ +     + G+ ILSL+FQ  + L +SS +  +   L + I ++ ++++F  SF 
Sbjct: 90  EMQSY-QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFS 149

Query: 68  GVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSFSL 123
           G+ LR+S+P+  N +E  GS++  + FF+M + FLP    W++W   A S+ AF  SL
Sbjct: 150 GIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLYWVTWLACAFSLLAFFSSL 206

BLAST of MS015270 vs. NCBI nr
Match: PQM35508.1 (uncharacterized protein Pyn_09459 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 1   LPLYVVN---EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSS---------QIPPSLSL 60
           LP+Y+     E QS+ ++    + G+ +L LTFQA +GL ++S           P  L+L
Sbjct: 66  LPIYLHGCQIEVQSY-QSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLAL 125

Query: 61  QIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 120
            I  V +VI+F   F  + L  ++PR  + +EKFGSV   + FFLM + FL + F WI W
Sbjct: 126 HIVGVAMVIAFAACFSAIFLTRAYPRAASLIEKFGSVSAALGFFLMTSIFLSSIFIWICW 185

Query: 121 PVFALSMAAFSFSL 123
              A S+ AF+ +L
Sbjct: 186 LACAFSLLAFTLAL 198

BLAST of MS015270 vs. NCBI nr
Match: XP_020410427.1 (uncharacterized protein LOC109946571 [Prunus persica])

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-10
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 1   LPLYVVN---EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSS---------QIPPSLSL 60
           LP+Y+     E QS+ ++N   + G+ +L LTFQA +GL ++S           P  L+L
Sbjct: 106 LPIYLHGCQIEVQSY-QSNAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLAL 165

Query: 61  QIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 120
            +  V +VI+F   F  + L  ++PR  + +EK GSV   + FFLM + FL + F WI W
Sbjct: 166 HMVGVAMVIAFAACFSAIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFLSSIFIWICW 225

Query: 121 PVFALSMAAFSFSL 123
              A S+ AF+ +L
Sbjct: 226 LACAFSLLAFTLAL 238

BLAST of MS015270 vs. ExPASy TrEMBL
Match: A0A1R3HPA4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27768 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 8   EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVS--SQIPPSLSLQIAEVMVVISFGVSFCG 67
           E QS+ +   S N G+ I+SLTFQ  + L +S        LS+QI +V ++++F  SF G
Sbjct: 33  EMQSYQQRPNSANLGKTIMSLTFQVVVALALSMGQSHHQLLSIQIVKVSMIMAFAASFSG 92

Query: 68  VTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 109
           + LRNS+P+    +E  GS+   + FF+M + FLP +F W++W
Sbjct: 93  IFLRNSYPKSARIVENTGSIAAAVGFFIMTSIFLPVKFSWVAW 135

BLAST of MS015270 vs. ExPASy TrEMBL
Match: A0A6J1B1Z4 (uncharacterized protein LOC110423379 isoform X1 OS=Herrania umbratica OX=108875 GN=LOC110423379 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 0

Query: 1   LPLYV-VNEFQSHPRTNR-STNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMV 60
           +PLY+  +E + H    R   + G+ ILSL+FQ  + L  SS +  +   L +   ++ +
Sbjct: 80  IPLYINYSEIEMHSYQPRPPVSLGKTILSLSFQIVVALAPSSSMGQAHHLLPIDFVKISM 139

Query: 61  VISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSM 120
           +++F  SF G+ LR+S+P+  N +E  GS++  + FF+M + FLP  F W++W   A S+
Sbjct: 140 IMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNFSWVNWLACAFSL 199

Query: 121 AAFSFSL 123
            AF  SL
Sbjct: 200 LAFFSSL 206

BLAST of MS015270 vs. ExPASy TrEMBL
Match: A0A061EGV0 (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao OX=3641 GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 8   EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMVVISFGVSFC 67
           E QS+ +     + G+ ILSL+FQ  + L +SS +  +   L + I ++ ++++F  SF 
Sbjct: 90  EMQSY-QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFS 149

Query: 68  GVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSFSL 123
           G+ LR+S+P+  N +E  GS++  + FF+M + FLP    W++W   A S+ AF  SL
Sbjct: 150 GIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLYWVTWLACAFSLLAFFSSL 206

BLAST of MS015270 vs. ExPASy TrEMBL
Match: A0A314UEN6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_09459 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0

Query: 1   LPLYVVN---EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSS---------QIPPSLSL 60
           LP+Y+     E QS+ ++    + G+ +L LTFQA +GL ++S           P  L+L
Sbjct: 66  LPIYLHGCQIEVQSY-QSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLAL 125

Query: 61  QIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 120
            I  V +VI+F   F  + L  ++PR  + +EKFGSV   + FFLM + FL + F WI W
Sbjct: 126 HIVGVAMVIAFAACFSAIFLTRAYPRAASLIEKFGSVSAALGFFLMTSIFLSSIFIWICW 185

Query: 121 PVFALSMAAFSFSL 123
              A S+ AF+ +L
Sbjct: 186 LACAFSLLAFTLAL 198

BLAST of MS015270 vs. ExPASy TrEMBL
Match: A0A5D2MJL9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G114200v1 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 0

Query: 8   EFQSH---PRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPS----LSLQIAEVMVVISFG 67
           E QSH   PR N S + G+ I+SLTFQA   L  SS    +      L  +   +V++F 
Sbjct: 83  EMQSHHQQPRPN-SVSLGKTIMSLTFQAVFALAPSSSTEQADHHHTLLPWSAASMVMAFA 142

Query: 68  VSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSF 123
            SFCG+ L  S PR  + +    SV+  + FF+M++ FLP  F W++W    LS+ AF  
Sbjct: 143 ASFCGIFLHTSHPRIASIIGNTVSVIAALGFFIMSSIFLPGNFAWVTWLACGLSLLAFFL 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OMO72209.13.9e-1238.83hypothetical protein COLO4_27768 [Corchorus olitorius][more]
XP_021293273.18.6e-1234.65uncharacterized protein LOC110423379 isoform X1 [Herrania umbratica][more]
EOY01534.12.1e-1034.75Ileal sodium/bile acid cotransporter, putative [Theobroma cacao][more]
PQM35508.12.8e-1036.57uncharacterized protein Pyn_09459 [Prunus yedoensis var. nudiflora][more]
XP_020410427.16.2e-1035.82uncharacterized protein LOC109946571 [Prunus persica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3HPA41.9e-1238.83Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27768 PE=4 SV=1[more]
A0A6J1B1Z44.2e-1234.65uncharacterized protein LOC110423379 isoform X1 OS=Herrania umbratica OX=108875 ... [more]
A0A061EGV01.0e-1034.75Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao OX=3641 GN=TCM... [more]
A0A314UEN61.3e-1036.57Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_094... [more]
A0A5D2MJL96.7e-1038.52Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G114200v1 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015270.1MS015270.1mRNA