MS015238 (gene) Bitter gourd (TR) v1

Overview


Name	MS015238
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location	scaffold2: 1974520 .. 1974768 (-)
RNA-Seq Expression	MS015238
Synteny	MS015238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGCTCGAAGGTCTTCGAATGGCAATTATGTTGAATTTCCAATCGGTGCAATTTGAGACTGATTCCCTCAAGCTAGTCAATCTAATTATTGGAGACTCTGAAGCTCATAACGTTTCCAACGTTCGGGTGAAGGATATTCGAAATCTGGTGAAATTTTTTTCCAATTTTAAGATTGTCCATGTGCGGTGTATCACGAACAGGGTTGTCCATAAGGTGGCTTCTTTTGTGTTTTCTTTAGAGAATTTT

mRNA sequence

GTTGTGCTCGAAGGTCTTCGAATGGCAATTATGTTGAATTTCCAATCGGTGCAATTTGAGACTGATTCCCTCAAGCTAGTCAATCTAATTATTGGAGACTCTGAAGCTCATAACGTTTCCAACGTTCGGGTGAAGGATATTCGAAATCTGGTGAAATTTTTTTCCAATTTTAAGATTGTCCATGTGCGGTGTATCACGAACAGGGTTGTCCATAAGGTGGCTTCTTTTGTGTTTTCTTTAGAGAATTTT

Coding sequence (CDS)

GTTGTGCTCGAAGGTCTTCGAATGGCAATTATGTTGAATTTCCAATCGGTGCAATTTGAGACTGATTCCCTCAAGCTAGTCAATCTAATTATTGGAGACTCTGAAGCTCATAACGTTTCCAACGTTCGGGTGAAGGATATTCGAAATCTGGTGAAATTTTTTTCCAATTTTAAGATTGTCCATGTGCGGTGTATCACGAACAGGGTTGTCCATAAGGTGGCTTCTTTTGTGTTTTCTTTAGAGAATTTT

Protein sequence

VVLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLENF

Homology

[Close]

BLAST of MS015238 vs. NCBI nr
Match: XP_022142956.1 (uncharacterized protein LOC111012950 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 2   VLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVH 61
           +LEGLR+A  LN Q VQFE+DSL+L+NL+  D  +   SNV ++DIR L + F +F  +H
Sbjct: 83  LLEGLRLADHLNIQQVQFESDSLQLINLLTEDPISWCGSNVWLEDIRVLARNFIDFNFLH 142

Query: 62  VRCITNRVVHKVASFVFSLEN 83
           V   +N+   +VASF    +N
Sbjct: 143 VCRSSNKAARRVASFAVGFDN 163

[Close]

BLAST of MS015238 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-08
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 2   VLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVH 61
           +LEGLR+A  LN Q VQFE+DSL+L+NL+  D  +   SNV ++DIR L + F +F  +H
Sbjct: 83  LLEGLRLADHLNIQQVQFESDSLQLINLLTEDPISWCGSNVWLEDIRVLARNFIDFNFLH 142

Query: 62  VRCITNRVVHKVASFVFSLEN 83
           V   +N+   +VASF    +N
Sbjct: 143 VCRSSNKAARRVASFAVGFDN 163

[Close]

BLAST of MS015238 vs. TAIR 10
Match: AT5G42965.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.5e-05
Identity = 29/87 (33.33%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 1   VVLEGLRMAIM----LNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSN 60
           V LE +R A +     N++ V FE+DS  LV+L+  D++  N++  R++DIR++ + F  
Sbjct: 18  VELEAMRWAALSMSRFNYKKVIFESDSQHLVSLLGDDTDYPNLA-PRIQDIRHIFQQFEE 77

Query: 61  FKIVHVRCITNRVVHKVASFVFSLENF 84
            K++H++   N V  ++A    SL N+
Sbjct: 78  VKVMHIKREGNSVADRIARESLSLLNY 103

The following BLAST results are available for this feature:

BLAST of MS015238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142956.1	1.1e-07	45.68	uncharacterized protein LOC111012950 [Momordica charantia]	[more]

BLAST of MS015238 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNR4	5.5e-08	45.68	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of MS015238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42965.1	2.5e-05	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 3..76 e-value: 2.3E-12 score: 46.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..80 e-value: 3.9E-7 score: 32.1
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 2..74 e-value: 1.35321E-10 score: 51.1608

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015238.1	MS015238.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity