MS015232 (gene) Bitter gourd (TR) v1

Overview
NameMS015232
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine/arginine repetitive matrix protein 1-like
Locationscaffold2: 1947306 .. 1947662 (-)
RNA-Seq ExpressionMS015232
SyntenyMS015232
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCAACTTCATCGTCGTCGTGAAGATCGGCCGGAGCTTGAGCACGAAGATTTCGGTGCCAAAAGTATAGGTTTCGACGGATCTGAGATTCGTGAGGAAGTCTGTTCACAACCGCGAATACTTTCTCCGCTAGGATCGCCGCCGTCGCGGGTGTCAGCTCGCGATCCCAGGCCATCGCTGCCCCCAAGACGATCCCTATAGTGGTTAAACGGAGGCCAGAGAGAACGCATAAGGTCCATACGCCTGATGAAGAAATCGACGACGGCACAAGTTCAACGGATTCAGCTTCCACCACTCTCACCGCCGTCGTTTAACCGGGAATCGGAGCAGAAAAGAGCGGCAAAAATGAGAAGAAGG

mRNA sequence

GATCAACTTCATCGTCGTCGTGAAGATCGGCCGGAGCTTGAGCACGAAGATTTCGGTGCCAAAAGTATAGGTTTCGACGGATCTGAGATTCGTGAGGAAGTCTGTTCACAACCGCGAATACTTTCTCCGCTAGGATCGCCGCCGTCGCGGGTGTCAGCTCGCGATCCCAGGCCATCGCTGCCCAAGACGATCCCTATAGTGGTTAAACGGAGGCCAGAGAGAACGCATAAGGTCCATACGCCTGATGAAGAAATCGACGACGCACAAGTTCAACGGATTCAGCTTCCACCACTCTCACCGCCGTCGTTTAACCGGGAATCGGAGCAGAAAAGAGCGGCAAAAATGAGAAGAAGG

Coding sequence (CDS)

GATCAACTTCATCGTCGTCGTGAAGATCGGCCGGAGCTTGAGCACGAAGATTTCGGTGCCAAAAGTATAGGTTTCGACGGATCTGAGATTCGTGAGGAAGTCTGTTCACAACCGCGAATACTTTCTCCGCTAGGATCGCCGCCGTCGCGGGTGTCAGCTCGCGATCCCAGGCCATCGCTGCCCAAGACGATCCCTATAGTGGTTAAACGGAGGCCAGAGAGAACGCATAAGGTCCATACGCCTGATGAAGAAATCGACGACGCACAAGTTCAACGGATTCAGCTTCCACCACTCTCACCGCCGTCGTTTAACCGGGAATCGGAGCAGAAAAGAGCGGCAAAAATGAGAAGAAGG

Protein sequence

DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSLPKTIPIVVKRRPERTHKVHTPDEEIDDAQVQRIQLPPLSPPSFNRESEQKRAAKMRRR
Homology
BLAST of MS015232 vs. NCBI nr
Match: XP_022143734.1 (uncharacterized protein C6orf132 homolog [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 9.1e-27
Identity = 82/132 (62.12%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSL 60
           DQLHRRRE RPELEHEDFGA+S GFD S IREEV S+PR+LSP  SPP       P P+L
Sbjct: 187 DQLHRRREARPELEHEDFGARSTGFDRSGIREEVYSKPRMLSPPRSPP------PPPPTL 246

Query: 61  ---PKTIPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPLSPPSFNRE 119
              PKT P VVKRRP RTHKV  HTPD EID          A  QRIQLPPLSPP+F +E
Sbjct: 247 PPPPKTTPTVVKRRPMRTHKVHSHTPDGEIDRQHKNGDSDVADCQRIQLPPLSPPAFYQE 306

BLAST of MS015232 vs. NCBI nr
Match: XP_011659637.1 (formin-like protein 20 [Cucumis sativus] >KGN45509.1 hypothetical protein Csa_016787 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 81/137 (59.12%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSL 60
           DQLHRRRE +PELE  D  AKSI FD SEIRE+V SQP I SP  SPP +VS   PRP  
Sbjct: 189 DQLHRRRETQPELEQRDSEAKSIVFDRSEIREDVYSQPLIPSPPRSPPQQVS--PPRPPS 248

Query: 61  P--------KTIPIVVKRRPERTHKV--HTPDEE---------IDDAQVQRIQLPPLSPP 119
           P         TIP +VKRRP+RTHKV  HTPDEE          D A  QRIQLPPLSPP
Sbjct: 249 PPPTPPPPANTIPKMVKRRPKRTHKVHSHTPDEENNQQHENGDSDVANFQRIQLPPLSPP 308

BLAST of MS015232 vs. NCBI nr
Match: XP_038896222.1 (serine/arginine repetitive matrix protein 1-like [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-23
Identity = 84/140 (60.00%), Postives = 88/140 (62.86%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSP--LGSPPSRVSARDPRP 60
           DQLHRRRE RPELE  D  AKSIGFD SEIRE+V SQP I SP    SPP RVS   P P
Sbjct: 185 DQLHRRRETRPELERLDSDAKSIGFDRSEIREDVYSQPAIPSPPRPRSPPPRVSPPRP-P 244

Query: 61  SLPKT---------IPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPL 119
           S P T          P VVKRRP+RTHKV  HTPD EID          A  QRIQLPPL
Sbjct: 245 SPPPTPPPPANTTPPPKVVKRRPKRTHKVHSHTPDTEIDQQNENGDSDVANFQRIQLPPL 304

BLAST of MS015232 vs. NCBI nr
Match: KAG6575459.1 (hypothetical protein SDJN03_26098, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014003.1 hypothetical protein SDJN02_24173, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-22
Identity = 78/135 (57.78%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVS---ARDPR 60
           DQLHRRRE RPELE ED   KSIGFD SEIRE+V SQ  I SP  SPP +VS   +  P 
Sbjct: 186 DQLHRRREARPELEREDSDVKSIGFDRSEIREDVYSQLPIPSPPRSPPPQVSPPRSPSPP 245

Query: 61  PSLP---KTIPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPLSPPSF 119
           P+ P    T P VVKRRP+RTHKV  HTP  EID          A+ QRI LPPLSPP F
Sbjct: 246 PTPPPPANTTPKVVKRRPKRTHKVHSHTPAGEIDQHNKNGDSDVAEFQRIPLPPLSPPLF 305

BLAST of MS015232 vs. NCBI nr
Match: XP_023548433.1 (protein enabled homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-22
Identity = 77/135 (57.04%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVS---ARDPR 60
           DQLHRRRE RPELE ED   KSIGFD SE+RE+V SQ  I SP  SPP +VS   +  P 
Sbjct: 186 DQLHRRREARPELEREDSDVKSIGFDRSEMREDVYSQMPIPSPPRSPPPQVSPPRSPSPP 245

Query: 61  PSLP---KTIPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPLSPPSF 119
           P+ P    T P VVKRRP+RTHKV  HTP  EID          A+ QRI LPPLSPP F
Sbjct: 246 PTPPPPANTTPKVVKRRPKRTHKVHSHTPAGEIDQHNKNGDSDVAEFQRIPLPPLSPPLF 305

BLAST of MS015232 vs. ExPASy TrEMBL
Match: A0A6J1CQ76 (uncharacterized protein C6orf132 homolog OS=Momordica charantia OX=3673 GN=LOC111013573 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.4e-27
Identity = 82/132 (62.12%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSL 60
           DQLHRRRE RPELEHEDFGA+S GFD S IREEV S+PR+LSP  SPP       P P+L
Sbjct: 187 DQLHRRREARPELEHEDFGARSTGFDRSGIREEVYSKPRMLSPPRSPP------PPPPTL 246

Query: 61  ---PKTIPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPLSPPSFNRE 119
              PKT P VVKRRP RTHKV  HTPD EID          A  QRIQLPPLSPP+F +E
Sbjct: 247 PPPPKTTPTVVKRRPMRTHKVHSHTPDGEIDRQHKNGDSDVADCQRIQLPPLSPPAFYQE 306

BLAST of MS015232 vs. ExPASy TrEMBL
Match: A0A0A0K9L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450660 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 81/137 (59.12%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSL 60
           DQLHRRRE +PELE  D  AKSI FD SEIRE+V SQP I SP  SPP +VS   PRP  
Sbjct: 189 DQLHRRRETQPELEQRDSEAKSIVFDRSEIREDVYSQPLIPSPPRSPPQQVS--PPRPPS 248

Query: 61  P--------KTIPIVVKRRPERTHKV--HTPDEE---------IDDAQVQRIQLPPLSPP 119
           P         TIP +VKRRP+RTHKV  HTPDEE          D A  QRIQLPPLSPP
Sbjct: 249 PPPTPPPPANTIPKMVKRRPKRTHKVHSHTPDEENNQQHENGDSDVANFQRIQLPPLSPP 308

BLAST of MS015232 vs. ExPASy TrEMBL
Match: A0A6J1JVT7 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488332 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 78/135 (57.78%), Postives = 85/135 (62.96%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVS---ARDPR 60
           DQLHRRRE RPELE ED   KSIGFD SEIRE+V SQ  I SP  SPP  VS   +  P 
Sbjct: 186 DQLHRRREARPELEREDSDVKSIGFDRSEIREDVYSQLPIPSPPRSPPPLVSPPRSPSPP 245

Query: 61  PSLP---KTIPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPLSPPSF 119
           P+ P    T P VVKRRP+RTHKV  HTP  EID          A+ QRI LPPLSPP F
Sbjct: 246 PTPPPPAHTTPKVVKRRPKRTHKVHSHTPAVEIDQHNKNGDSDVAEFQRIPLPPLSPPLF 305

BLAST of MS015232 vs. ExPASy TrEMBL
Match: A0A6J1KKJ2 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494880 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 72/130 (55.38%), Postives = 80/130 (61.54%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSL 60
           DQLHRR + RPELE ED GAKS GFD SE+ E+V SQP I SP   PP R  +  P    
Sbjct: 184 DQLHRRHQARPELEREDSGAKSTGFDRSEVHEDVYSQPAIPSPPRVPPPRSPSPPPTLQT 243

Query: 61  P-KTIPIVVKRRPERTHKV--HTPDEEIDD---------AQVQRIQLPPLSPPSFNRESE 119
           P  T P VVKRRP+RTH V  HTPD  ID          A  QRI LPPLSPPSF +ESE
Sbjct: 244 PASTTPKVVKRRPKRTHNVHSHTPDGAIDQQQKNDDSDVADFQRIHLPPLSPPSFYQESE 303

BLAST of MS015232 vs. ExPASy TrEMBL
Match: A0A5A7V0Q3 (Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001070 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 78/137 (56.93%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   DQLHRRREDRPELEHEDFGAKSIGFDGSEIREEVCSQPRILSPLGSPPSRVSARDPRPSL 60
           DQLHRRRE +PELE +D  AKSI FD SEIR +V S+P I SP  SPP +VS   PRP  
Sbjct: 188 DQLHRRRETQPELERQDSEAKSIVFDRSEIR-DVYSEPVIPSPPRSPPPQVS--PPRPPS 247

Query: 61  P--------KTIPIVVKRRPERTHKV--HTPDEEI---------DDAQVQRIQLPPLSPP 119
           P         TIP +VKRRP+RTHKV  HTP+EEI         D A  QRIQLPPLSPP
Sbjct: 248 PPPTPPPPANTIPKMVKRRPKRTHKVHSHTPEEEINQQHENGDSDVANFQRIQLPPLSPP 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143734.19.1e-2762.12uncharacterized protein C6orf132 homolog [Momordica charantia][more]
XP_011659637.12.5e-2459.12formin-like protein 20 [Cucumis sativus] >KGN45509.1 hypothetical protein Csa_01... [more]
XP_038896222.12.1e-2360.00serine/arginine repetitive matrix protein 1-like [Benincasa hispida][more]
KAG6575459.13.0e-2257.78hypothetical protein SDJN03_26098, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548433.16.7e-2257.04protein enabled homolog [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CQ764.4e-2762.12uncharacterized protein C6orf132 homolog OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0A0K9L41.2e-2459.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450660 PE=4 SV=1[more]
A0A6J1JVT75.6e-2257.78serine/arginine repetitive matrix protein 1-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1KKJ25.6e-2255.38serine/arginine repetitive matrix protein 1-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A5A7V0Q37.3e-2256.93Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015232.1MS015232.1mRNA