MS003583 (gene) Bitter gourd (TR) v1

Overview


Name	MS003583
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L18-like
Location	scaffold234: 3714263 .. 3714658 (+)
RNA-Seq Expression	MS003583
Synteny	MS003583

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTATTTATTCAATCAGCTTGGACACGAAGGTCTCGAGGGGAGGCTGCAAAGAGACCGAACAAGAAATCATGGAAACAGAGGACAGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTGAGGAACAGTCTACCTTCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCTGAGAGATCGAAGGAAGCAGATGTATATGCAATGTCGTATGAGCCTAGGAAGGATGAAAGAGTTGAAGGTAAGCTTGGTATTGTTATTGATACCATCAAGGAGAACGGGATCATGTTTGTACCT

mRNA sequence

GTTTTATTTATTCAATCAGCTTGGACACGAAGGTCTCGAGGGGAGGCTGCAAAGAGACCGAACAAGAAATCATGGAAACAGAGGACAGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTGAGGAACAGTCTACCTTCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCTGAGAGATCGAAGGAAGCAGATGTATATGCAATGTCGTATGAGCCTAGGAAGGATGAAAGAGTTGAAGGTAAGCTTGGTATTGTTATTGATACCATCAAGGAGAACGGGATCATGTTTGTACCT

Coding sequence (CDS)

GTTTTATTTATTCAATCAGCTTGGACACGAAGGTCTCGAGGGGAGGCTGCAAAGAGACCGAACAAGAAATCATGGAAACAGAGGACAGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTGAGGAACAGTCTACCTTCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCTGAGAGATCGAAGGAAGCAGATGTATATGCAATGTCGTATGAGCCTAGGAAGGATGAAAGAGTTGAAGGTAAGCTTGGTATTGTTATTGATACCATCAAGGAGAACGGGATCATGTTTGTACCT

Protein sequence

VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

Homology

[Close]

BLAST of MS003583 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 5.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 71  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 130

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI
Sbjct: 131 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 190

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 191 DTIKENGIMFVP 202

[Close]

BLAST of MS003583 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 7.7e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 65  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 124

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDER+EGKLGIVI
Sbjct: 125 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 184

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 185 DTIKENGIMFVP 196

[Close]

BLAST of MS003583 vs. NCBI nr
Match: XP_022990182.1 (uncharacterized protein LOC111487153 [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 7.7e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 64  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 123

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDER+EGKLGIVI
Sbjct: 124 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 183

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 184 DTIKENGIMFVP 195

[Close]

BLAST of MS003583 vs. NCBI nr
Match: XP_022963861.1 (uncharacterized protein LOC111464045 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.5e-66
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGTSKVI
Sbjct: 65  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVI 124

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDER+EGKLGIVI
Sbjct: 125 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 184

Query: 121 DTIKENGIMFVP 133
           D IKENGIMFVP
Sbjct: 185 DAIKENGIMFVP 196

[Close]

BLAST of MS003583 vs. NCBI nr
Match: XP_038886307.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 54  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 113

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDER+EGKLGIVI
Sbjct: 114 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDERIEGKLGIVI 173

Query: 121 DTIKENGIMFV 132
           DTIKENGI+FV
Sbjct: 174 DTIKENGILFV 184

[Close]

BLAST of MS003583 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 10  RRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 69
           RR+R   AK    KS +           L VF +   I+A+V+    S+V++ A+T   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 70  LRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIM 129
           +R+ LP+  +  A +V+GKLIAER+K A V A++++ R   +  G++  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLK 117

Query: 130 F 131
           F
Sbjct: 129 F 117

[Close]

BLAST of MS003583 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.3e-07
Identity = 34/121 (28.10%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 18  KRPNKKSWKQRTDMYMRPFL--------LNVFFSKKFIHAKVMHRGTSKVISVATTNAKD 77
           K+ +KK+ +Q+  + +R  +        L VF S+K I+A+++       ++ A+T  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 78  LRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIM 131
           L+  L    D NA + +GKLIAE++KE  +  + ++ R   +  GK+  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFD-RSGYKYHGKVKALAEAARETGLK 122

[Close]

BLAST of MS003583 vs. ExPASy Swiss-Prot
Match: B7L0T4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-06
Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 38  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 97
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 98  DVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF 131
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of MS003583 vs. ExPASy Swiss-Prot
Match: A9W4S4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-06
Identity = 30/93 (32.26%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 38  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 97
           L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 98  DVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF 131
            V  + ++ R      G++  + D  +E G+ F
Sbjct: 89  GVTKVVFD-RSGYIFHGRVKALADAAREGGLDF 120

[Close]

BLAST of MS003583 vs. ExPASy Swiss-Prot
Match: Q8PNR1 (50S ribosomal protein L18 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 38  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEA 97
           L+V  + + ++A+V     SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A
Sbjct: 28  LSVLRTGQHLYAQVFTADGSKVIAAANTLQADVKDGLKNGKNSDAAAKVGKLIAERAKAA 87

Query: 98  DVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF 131
            +  ++++ R   R  G++  + D  +E G+ F
Sbjct: 88  GIEKVAFD-RSGYRYHGRIKALADAAREGGLQF 119

[Close]

BLAST of MS003583 vs. ExPASy TrEMBL
Match: A0A6J1DE20 (uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020202 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 71  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 130

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI
Sbjct: 131 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 190

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 191 DTIKENGIMFVP 202

[Close]

BLAST of MS003583 vs. ExPASy TrEMBL
Match: A0A6J1JHY7 (uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.7e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 64  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 123

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDER+EGKLGIVI
Sbjct: 124 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 183

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 184 DTIKENGIMFVP 195

[Close]

BLAST of MS003583 vs. ExPASy TrEMBL
Match: A0A6J1HH86 (uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC111464045 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.2e-66
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGTSKVI
Sbjct: 65  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVI 124

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDER+EGKLGIVI
Sbjct: 125 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 184

Query: 121 DTIKENGIMFVP 133
           D IKENGIMFVP
Sbjct: 185 DAIKENGIMFVP 196

[Close]

BLAST of MS003583 vs. ExPASy TrEMBL
Match: A0A1S3B2Q8 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 128/132 (96.97%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFIQSAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI
Sbjct: 59  VLFIQSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 118

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYA+SYEPRKDE++EGKLGIVI
Sbjct: 119 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAISYEPRKDEKIEGKLGIVI 178

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 179 DTIKENGIMFVP 190

[Close]

BLAST of MS003583 vs. ExPASy TrEMBL
Match: A0A6J1JY30 (uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.6e-65
Identity = 127/132 (96.21%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVI 60
           VLFI+SAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLL+VFFSKKF+HAKVMHRGTSKVI
Sbjct: 65  VLFIRSAWTRRSREEAAKRPNKKSWKQRTDMYMRPFLLDVFFSKKFVHAKVMHRGTSKVI 124

Query: 61  SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVI 120
           SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDER+EGKLGIVI
Sbjct: 125 SVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVI 184

Query: 121 DTIKENGIMFVP 133
           DTIKENGIMFVP
Sbjct: 185 DTIKENGIMFVP 196

[Close]

BLAST of MS003583 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 110/130 (84.62%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 3   FIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISV 62
           F+Q+AWTRRSRGEAAKRPN+KSWKQRTDMYMRPFLLNVFFS+KFIHAKVMHR TSKVISV
Sbjct: 58  FVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISV 117

Query: 63  ATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDT 122
           ATTNA+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+SYEPRK ER+EGKLGIVIDT
Sbjct: 118 ATTNARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDT 177

Query: 123 IKENGIMFVP 133
           IKE+GI+FVP
Sbjct: 178 IKEHGIIFVP 187

[Close]

BLAST of MS003583 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 17  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLP 76
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 70  SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 129

Query: 77  SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGI 129
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 130 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of MS003583 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 17  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLP 76
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 77  SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGI 129
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of MS003583 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 18  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSL 77
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 78  TDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGI 129
            +  AC  +G ++A+RS E D++ + Y PRK +++EGKL +V+  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of MS003583 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 32  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 91
           Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 92  ERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGI 129
           ER    D+ A++ + +K++R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of MS003583 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152485.1	5.9e-67	100.00	uncharacterized protein LOC111020202 [Momordica charantia]	[more]
XP_023521951.1	7.7e-67	99.24	uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]	[more]
XP_022990182.1	7.7e-67	99.24	uncharacterized protein LOC111487153 [Cucurbita maxima]	[more]
XP_022963861.1	6.5e-66	97.73	uncharacterized protein LOC111464045 [Cucurbita moschata]	[more]
XP_038886307.1	3.2e-65	97.71	50S ribosomal protein L18-like [Benincasa hispida]	[more]

BLAST of MS003583 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	2.4e-07	32.23	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
A9BG02	9.3e-07	28.10	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
B7L0T4	6.0e-06	32.26	50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688)...	[more]
A9W4S4	6.0e-06	32.26	50S ribosomal protein L18 OS=Methylorubrum extorquens (strain PA1) OX=419610 GN=...	[more]
Q8PNR1	1.0e-05	31.18	50S ribosomal protein L18 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=19...	[more]

BLAST of MS003583 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE20	2.9e-67	100.00	uncharacterized protein LOC111020202 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1JHY7	3.7e-67	99.24	uncharacterized protein LOC111487153 OS=Cucurbita maxima OX=3661 GN=LOC111487153...	[more]
A0A6J1HH86	3.2e-66	97.73	uncharacterized protein LOC111464045 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A1S3B2Q8	2.0e-65	96.97	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1	[more]
A0A6J1JY30	4.6e-65	96.21	uncharacterized protein LOC111489327 OS=Cucurbita maxima OX=3661 GN=LOC111489327...	[more]

BLAST of MS003583 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	2.0e-60	84.62	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	1.1e-23	47.79	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.1e-23	47.79	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	2.0e-17	37.84	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	1.4e-13	35.05	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 5..131 e-value: 6.6E-17 score: 63.7
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 29..130 e-value: 4.1E-10 score: 40.0
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 3..130
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 3..130
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 25..128 e-value: 1.09851E-16 score: 68.3355
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 32..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003583.1	MS003583.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome