MELO3C035027.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035027.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Isochorismatase domain-containing protein
Location	chr11: 16945089 .. 16945970 (+)
RNA-Seq Expression	MELO3C035027.jh1
Synteny	MELO3C035027.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTCGAAATCGCAAGGAATCACTGGTTTTTCATCATTTAGGTCCGTTAATTTTGAAAAGGAAAAAAAATATTCCTAATCCTCTGTTTGGACGGATTTTAAACCGTGAATTTAATTACTATTTGTTTTCCCCTAGGTTGTTCGAGAACATGATAGTGAAGGACGAGATGTTGAACGGTTTTGCCGCAATTACTATGGGAATGGAAAGCCGAATCCTGATGTGAAAGGAAGCAAATGGGAAGCAAAAGGGCAGAGGTAGTACAAGGAATTGAATTAAAAAAGAGAATATAAATTTGGTTAAACTAGGTTAGGTTCAGTGCCTTTTTTAATACTGATTTACATTGTCTTCTTCAGGAGGAGTATCACTGATTTGGTTTTCTCTAGTAACACTCTTTATATATACATATTTCCTGTTAATTCTATTCCAATATGAATTTATAGATTGAATGGTTAATGAATTAATATAATGGTAGGTGCTCAAACCCCAAACTGTATCAGATAGAGTGTTTTTTATGTTGTAGATTTGGATTACCATTCTATCACTCTTCTTTATGATGCTACTACAGCTTCTACTCCCAAAATTCATCATGGTATCTCTAATTTCCTCATTTATAGCTTTTGAGTTCAGTAATCAGTAGCGATTTGTAATGTTGTGGTTGTTTACTCCTAAATTGATATTGATATTCACTTGTTAGGTTGATTAAGTATTGGTATGATGTTAGTGGGGTTTGTGGAACAAATTGGCTAAGTTTTGGAATCATTGCATCTTCAGAAGGAGGATTTGGTTTACAAGGTTGTGAGGGTTCTTGAGAATTATAGATTGGTTGAGAGGGAGATTTGGGTACGCGTTAAAGAAATCGAAGAGAAAGTTGAGAGATAA

mRNA sequence

ATGCTGTCGAAATCGCAAGGAATCACTGGTTTTTCATCATTTAGGTCCGTTGTTCGAGAACATGATAGTGAAGGACGAGATGTTGAACGGTTTTGCCGCAATTACTATGGGAATGGAAAGCCGAATCCTGATGTGAAAGGAAGCAAATGGGAAGCAAAAGGGCAGAGGAGGAGTATCACTGATTTGGTTTTCTCTAATTTGGATTACCATTCTATCACTCTTCTTTATGATGCTACTACAGCTTCTACTCCCAAAATTCATCATGAAGGAGGATTTGGTTTACAAGGTTGTGAGGGTTCTTGAGAATTATAGATTGGTTGAGAGGGAGATTTGGGTACGCGTTAAAGAAATCGAAGAGAAAGTTGAGAGATAA

Coding sequence (CDS)

ATGCTGTCGAAATCGCAAGGAATCACTGGTTTTTCATCATTTAGGTCCGTTGTTCGAGAACATGATAGTGAAGGACGAGATGTTGAACGGTTTTGCCGCAATTACTATGGGAATGGAAAGCCGAATCCTGATGTGAAAGGAAGCAAATGGGAAGCAAAAGGGCAGAGGAGGAGTATCACTGATTTGGTTTTCTCTAATTTGGATTACCATTCTATCACTCTTCTTTATGATGCTACTACAGCTTCTACTCCCAAAATTCATCATGAAGGAGGATTTGGTTTACAAGGTTGTGAGGGTTCTTGA

Protein sequence

MLSKSQGITGFSSFRSVVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQRRSITDLVFSNLDYHSITLLYDATTASTPKIHHEGGFGLQGCEGS

Homology

[Close]

BLAST of MELO3C035027.jh1 vs. NCBI nr
Match: KAA0047912.1 (hypothetical protein E6C27_scaffold133G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 6.21e-29
Identity = 63/100 (63.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 1   MLSKSQGITGFSSFRSVVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQRRSIT 60
           MLSKSQGITGFSSF        SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR  + 
Sbjct: 1   MLSKSQGITGFSSF--------SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR--LI 60

Query: 61  DLVFSNLDYHSITLLYDATTASTPKIHHEGGFGLQGCEGS 100
              +          L     AS+     EGGFGLQGCEGS
Sbjct: 61  KYWYDVSGVCGTNWLSFGIIASS-----EGGFGLQGCEGS 85

[Close]

BLAST of MELO3C035027.jh1 vs. NCBI nr
Match: XP_004141764.1 (probable inactive nicotinamidase At3g16190 [Cucumis sativus] >KGN45388.1 hypothetical protein Csa_015610 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.04e-20
Identity = 57/118 (48.31%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPSVKGSKGAELVEGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPKIHH+
Sbjct: 115 TNLHSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKIHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. NCBI nr
Match: XP_016903403.1 (PREDICTED: probable inactive nicotinamidase At3g16190 isoform X2 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 3.93e-20
Identity = 56/118 (47.46%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPK+HH+
Sbjct: 115 TNLRSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKVHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. NCBI nr
Match: XP_008465520.1 (PREDICTED: probable inactive nicotinamidase At3g16190 isoform X1 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 6.38e-20
Identity = 56/118 (47.46%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPK+HH+
Sbjct: 115 TNLRSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKVHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. NCBI nr
Match: KAA0059313.1 (putative inactive nicotinamidase [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 6.38e-20
Identity = 56/118 (47.46%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPK+HH+
Sbjct: 115 TNLRSLLQGAGITDLVVCGVQTPNCIRQTVYDAVALDYHSITLLYDATAAATPKVHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. ExPASy Swiss-Prot
Match: Q93Z51 (Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana OX=3702 GN=At3g16190 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-04
Identity = 34/117 (29.06%), Postives = 48/117 (41.03%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKG----------------------------- 76
           VVREHD +GRDVE F R+ Y + K  P +KG                             
Sbjct: 55  VVREHDRQGRDVELFRRHNYSSEKVGPVIKGTVGAELVDGLMINEEDDYKIVKTRFSAFF 114

Query: 77  -SKWEAKGQRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIH 88
            +   +  Q   +T LV +                 LDY ++T++ DAT A+TP+IH
Sbjct: 115 STNLHSFLQTSGVTKLVIAGVQTPNCIRQTVFDAVALDYPNVTVITDATAAATPEIH 171

[Close]

BLAST of MELO3C035027.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TWN4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001930 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 3.01e-29
Identity = 63/100 (63.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 1   MLSKSQGITGFSSFRSVVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQRRSIT 60
           MLSKSQGITGFSSF        SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR  + 
Sbjct: 1   MLSKSQGITGFSSF--------SEGRDVERFCRNYYGNGKPNPDVKGSKWEAKGQR--LI 60

Query: 61  DLVFSNLDYHSITLLYDATTASTPKIHHEGGFGLQGCEGS 100
              +          L     AS+     EGGFGLQGCEGS
Sbjct: 61  KYWYDVSGVCGTNWLSFGIIASS-----EGGFGLQGCEGS 85

[Close]

BLAST of MELO3C035027.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K7E5 (Isochorismatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447030 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.04e-21
Identity = 57/118 (48.31%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPSVKGSKGAELVEGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPKIHH+
Sbjct: 115 TNLHSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKIHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E593 (probable inactive nicotinamidase At3g16190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503139 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.90e-20
Identity = 56/118 (47.46%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPK+HH+
Sbjct: 115 TNLRSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKVHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UTR3 (Putative inactive nicotinamidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00370 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.09e-20
Identity = 56/118 (47.46%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPK+HH+
Sbjct: 115 TNLRSLLQGAGITDLVVCGVQTPNCIRQTVYDAVALDYHSITLLYDATAAATPKVHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CP26 (probable inactive nicotinamidase At3g16190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503139 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.09e-20
Identity = 56/118 (47.46%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKGSKW-------EAKG--------------- 76
           VVREHD EGRDVERF R+YYGNGKPNP VKGSK        E K                
Sbjct: 55  VVREHDGEGRDVERFRRHYYGNGKPNPLVKGSKGAELVQGLEIKEGEYKLVKTRFSAFFN 114

Query: 77  -------QRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIHHE 89
                  Q   ITDLV                   LDYHSITLLYDAT A+TPK+HH+
Sbjct: 115 TNLRSLLQGAGITDLVVCGVQTPNCIRQTVFDAVALDYHSITLLYDATAAATPKVHHD 172

[Close]

BLAST of MELO3C035027.jh1 vs. TAIR 10
Match: AT3G16190.1 (Isochorismatase family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-05
Identity = 34/117 (29.06%), Postives = 48/117 (41.03%), Query Frame = 0


Query: 17  VVREHDSEGRDVERFCRNYYGNGKPNPDVKG----------------------------- 76
           VVREHD +GRDVE F R+ Y + K  P +KG                             
Sbjct: 55  VVREHDRQGRDVELFRRHNYSSEKVGPVIKGTVGAELVDGLMINEEDDYKIVKTRFSAFF 114

Query: 77  -SKWEAKGQRRSITDLVFSN----------------LDYHSITLLYDATTASTPKIH 88
            +   +  Q   +T LV +                 LDY ++T++ DAT A+TP+IH
Sbjct: 115 STNLHSFLQTSGVTKLVIAGVQTPNCIRQTVFDAVALDYPNVTVITDATAAATPEIH 171

The following BLAST results are available for this feature:

BLAST of MELO3C035027.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047912.1	6.21e-29	63.00	hypothetical protein E6C27_scaffold133G001930 [Cucumis melo var. makuwa]	[more]
XP_004141764.1	1.04e-20	48.31	probable inactive nicotinamidase At3g16190 [Cucumis sativus] >KGN45388.1 hypothe...	[more]
XP_016903403.1	3.93e-20	47.46	PREDICTED: probable inactive nicotinamidase At3g16190 isoform X2 [Cucumis melo]	[more]
XP_008465520.1	6.38e-20	47.46	PREDICTED: probable inactive nicotinamidase At3g16190 isoform X1 [Cucumis melo]	[more]
KAA0059313.1	6.38e-20	47.46	putative inactive nicotinamidase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035027.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z51	4.3e-04	29.06	Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]

BLAST of MELO3C035027.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWN4	3.01e-29	63.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K7E5	5.04e-21	48.31	Isochorismatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G44...	[more]
A0A1S4E593	1.90e-20	47.46	probable inactive nicotinamidase At3g16190 isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7UTR3	3.09e-20	47.46	Putative inactive nicotinamidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3CP26	3.09e-20	47.46	probable inactive nicotinamidase At3g16190 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of MELO3C035027.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16190.1	3.0e-05	29.06	Isochorismatase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47044:SF2	OS02G0276400 PROTEIN	coord: 17..49
None	No IPR available	PANTHER	PTHR47044	OS02G0276400 PROTEIN	coord: 17..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035027.jh1.t1	MELO3C035027.jh1.t1	mRNA