MELO3C000821 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000821
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cell division control protein 6-like protein B
Location	chr06: 11724344 .. 11724513 (+)
RNA-Seq Expression	MELO3C000821
Synteny	MELO3C000821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACGGAGACCAATTCCCCGAAGCGGAAACTGAGATCTAGTAGTGTGCAGAGGCAACAAAGCCCTGTCTCTACGCCGGTGAATTGGAAATCTCCTCGTCGGTGCCTTAATTCGAGTCCAAAAAGCCCTCCAGAG

mRNA sequence

CCATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACGGAGACCAATTCCCCGAAGCGGAAACTGAGATCTAGTAGTGTGCAGAGGCAACAAAGCCCTGTCTCTACGCCGGTGAATTGGAAATCTCCTCGTCGGTGCCTTAATTCGAGTCCAAAAAGCCCTCCAGAG

Coding sequence (CDS)

ATTACTCGAGCAAATCAGTGCAAGGTCGAGAGTGTAACGGAGACCAATTCCCCGAAGCGGAAACTGAGATCTAGTAGTGTGCAGAGGCAACAAAGCCCTGTCTCTACGCCGGTGAATTGGAAATCTCCTCGTCGGTGCCTTAATTCGAGTCCAAAAAGCCCTCCAGAG

Protein sequence

ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE

Homology

[Close]

BLAST of MELO3C000821 vs. NCBI nr
Match: TYK19434.1 (cell division control protein 6-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKVESVTETN PKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE
Sbjct: 4  ITRANQCKVESVTETNFPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. NCBI nr
Match: XP_016903141.1 (PREDICTED: cell division control protein 6 homolog B [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKVESV ETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE
Sbjct: 4  ITRANQCKVESVMETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. NCBI nr
Match: KAA0040511.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKV SVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSP RCLNSSPKSPPE
Sbjct: 4  ITRANQCKVVSVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPGRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. NCBI nr
Match: TYK23452.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKV SVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSP RCLNSSPKSPPE
Sbjct: 4  ITRANQCKVVSVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPGRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. NCBI nr
Match: KAA0060498.1 (cell division control protein 6-like protein B [Cucumis melo var. makuwa] >TYK18579.1 cell division control protein 6-like protein B [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 4.3e-19
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          IT+ANQCKVESVTETN PKRKLRSSSVQRQQSPVSTPVNWKSPRRCLN SPKSPPE
Sbjct: 4  ITQANQCKVESVTETNFPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNLSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. ExPASy TrEMBL
Match: A0A5D3D7A9 (Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00850 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKVESVTETN PKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE
Sbjct: 4  ITRANQCKVESVTETNFPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. ExPASy TrEMBL
Match: A0A1S4E4I1 (Cell division control protein OS=Cucumis melo OX=3656 GN=LOC103502097 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKVESV ETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE
Sbjct: 4  ITRANQCKVESVMETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. ExPASy TrEMBL
Match: A0A5A7TFT1 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00580 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKV SVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSP RCLNSSPKSPPE
Sbjct: 4  ITRANQCKVVSVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPGRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. ExPASy TrEMBL
Match: A0A5D3DIR5 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00110 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          ITRANQCKV SVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSP RCLNSSPKSPPE
Sbjct: 4  ITRANQCKVVSVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPGRCLNSSPKSPPE 59

[Close]

BLAST of MELO3C000821 vs. ExPASy TrEMBL
Match: A0A5D3D4V8 (Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001010 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  ITRANQCKVESVTETNSPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNSSPKSPPE 57
          IT+ANQCKVESVTETN PKRKLRSSSVQRQQSPVSTPVNWKSPRRCLN SPKSPPE
Sbjct: 4  ITQANQCKVESVTETNFPKRKLRSSSVQRQQSPVSTPVNWKSPRRCLNLSPKSPPE 59

The following BLAST results are available for this feature:

BLAST of MELO3C000821 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19434.1	3.0e-20	98.21	cell division control protein 6-like protein B [Cucumis melo var. makuwa]	[more]
XP_016903141.1	3.0e-20	98.21	PREDICTED: cell division control protein 6 homolog B [Cucumis melo]	[more]
KAA0040511.1	2.5e-19	96.43	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
TYK23452.1	2.5e-19	96.43	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
KAA0060498.1	4.3e-19	94.64	cell division control protein 6-like protein B [Cucumis melo var. makuwa] >TYK18...	[more]

BLAST of MELO3C000821 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C000821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7A9	1.4e-20	98.21	Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S4E4I1	1.4e-20	98.21	Cell division control protein OS=Cucumis melo OX=3656 GN=LOC103502097 PE=3 SV=1	[more]
A0A5A7TFT1	1.2e-19	96.43	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3DIR5	1.2e-19	96.43	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3D4V8	2.1e-19	94.64	Cell division control protein 6-like protein B OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of MELO3C000821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000821.1	MELO3C000821.1	mRNA