Lsi06G010740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	chr06: 20959343 .. 20967155 (+)
RNA-Seq Expression	Lsi06G010740
Synteny	Lsi06G010740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGGACCAACTGGGACATTGGTCATGTTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTATAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAACGTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTAACCATTATTGTAGCTCACCATATGTATGTGATGCCCCCTTATCCATATCTAGCTACTGACTATAGTACACATTCATCCATTCACATAACCACATTTTTCTTTTTAATATTTGTATAATGAAAGGATGAGATAAGGATTTGGCTCATATTTTTGAAATAATATATATGAGTTTCTAAGGTATAAAGGAAATAAACAAAATTTTAACTAAAAAATATTTTGAGTATAATTATTATAAGCTTTCATTAGGAAAGAGATATCATTAAGAAAAAAATGAGCTAGAAGTTGGTAAGAAAACCATCGGTATCATATAGCTAAAAAAGTGGAAGAAAAACAGAGACAAAACGAAAACATGCAAATATTACTAAATAAGGTTGTAATTATTGATGAGATACCAATTTTGTAAAAACCTTACTTTTAAACTTTTGAATAATAAGAATTATTTAAACATATATTAGGTTTAAAATTTAAACTATAGACACCAAATTGAAAATATAAAAATTACATGAACAAAATTGAAACCATTATCTTAGAGTGTACTTTCAATTAAACCTTTTTACAGATATTTGATAATACATTTCCCTTCCACAAATCATTTTCTTGTTTTAGAATTCTATCATATATAACATCAGTTTTCTTTAGTAAGGGGAAATCTTTAGAGTACCAAACAATAATGAACAAATTAATGGTGGGAAAATACTCATTAATTCTCATTCAAAAGGATAAGAAACGATTTTGCTCCAACAAAATCCACTCATCCTACAAATTTTATAAGGACATAGTACTATAGAAAAAGAAAAAAAAAAGAAAAAAGAAACTCATTATTATCATATAACTTTCTTATTCATCATGTGCTAGCTCACTTAGAAAATGTTTACAAACTACAAATGGGTAAAACGTCTTTACAAACCACAAATCTTCTTAATCACACCCAAATCAGCAGGGGGAATAATCTTTTGAAAAATTTCGGGGGCACAGTCGTTTAGCTTAGAAATGGCTTTACAACAAGAAGGATGAGGAACAACTGGAAGCTTGATAACACTTGCCACACACAACGTCGCCTCTAAAATAAAAGGAGCACATTTAGAGATAGGGAAATTTTCTGGAACTGTTGGACCAGGTGCTGCAGCTGTCGTGCTGGCGATCGTCGATGGTGCTAAAATTGCTATACAAGCAAGGAATATAAGTGTTAACTTCATTGTGGATACGTTCAGTGACTTTGGTGCCATTGTTTGTAGAAAAATGAGTGTGGAGTTCTAGAGAATTAGATAATCTTCAGTTTTGTTTGTATGAGAAAGTTGTGAAGTGTGAGTCTCTTATATAGGGGAAGATATGGAGTTGGGATTTTGGCATATTTATGGCCATTGAAACTATCTGTCGCCACGTGCTCGAGACGATGTGGAGCGGCCGACGTCCTCAAAAAGAGTTAATAAAAAAAAGAAAATAAAAGGAGTCGCCACCAATCTTTTTTACGGTGTGATTGGACACCGAAATAAAGTAAACAATTTTAAGTAAAAATCAAATAAAATAGTCTGCGAAAACTAGAGTTGAGTTTGGGAGTCATTTGTGCATGGGGAAGGTGTTAGCACCCCACAACACCCGTTAAGTAAAACGGTGGCCAATTTATTTTTATCTTGAAGAAAAAATTATTCTTTAAATGAAATCATTTGGGAAGAATTTTTTTTTTTAAAAACAAATGTCTTATTTTACCACTCATTACTCAAATATTGAAGTAATGATCCCATAAAATAAGTGGAGAATATTTCCGTTAATTAGGCTACACTAGAATTAAGGAAAANACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTTTTCATCTTTTTATACTTTTGATGTCGATTAAATTATAAATTTTAGTTCTCAACTATTAGATTTGTGCTCAATAAGTTTTTTTTTTTTTAATTATGTTTTTTTAATATATGTTTGATGAATCTTTTAACTTGTATTTAACAAATCCATAAACTTTGAGTTTTGTTTTTAATAAGTATTCGACTTATTTGATTTTTTTAAAAAAACAATTATGAACGTTTTAGGTTAATAATAGAAAGTTTAGAGTCTCATCCGATAACGATTTCATTTCTAGTTTTTTTGTTATTGAAAATTATGCTTGTTTTCTTTCAATTTTTTAATGAGTTGTTTTTAAATATAGAAAAATAAGTAAAACTATTTATAAATATAGAAAATCAGAGCTAGACAGTGAAATTTTTCTTTATTTGTAAATAGTTTGATATTTTTTATGTTTATAATAATTTCTCTTTTTTAATTATGTTTTTAACCTTTGTTAATGAAACACTTGAATTCCTAATCAAATTCTAAAAATAATAACAAGTTTCTAAATTTCTTTTAGTTTTCAAAACATTAATTTTTTTTTTTTGAACCATTAGTAGAAAGTGAATAACAAAACATTGAAACTTATGTGTGTCAGTACGTAGTGTTCAAAACTGATTGGTTATCAAAGGAGACTTAATGTTTTATTAAATAAAAAATTTAATTTTATGCTCAATAGATTCGTTAATTTCTTTTAAAAAAATGTTAAATATGCTAAGGATCTATTACAAGCAAATGGAAATTTAGAGACCCAATTGAAAATTTTAAAGCTCTCATGAACTTATTAGACACAAAATTAAAACTTTTTAGACCTATATTAAATACTTGTCAAAGTTCAAGAGTATATATGATCAAACACACAAGCAATAAGTAATTTAAAATTTTAATATATTTTTTGTTAAATTAAAAATTGATTCCTATAGTTTAAAATGTTTTAATTGAGTATCTACGATGTTCCCACTACTACTAGATCAATCTATGATTTCTCTCCTACATTTTTAGGAGTTTTAAAACTTTAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTCTCTTCCCTTGCTTCTTCTTTATTTTTTTTTTCCTTCTAGTTTTCTCATTTAAACATATATTAAATTTAAAATTTAAACTATAGAAACCAAATTGAAAATATAAAAATTACATGCAAAATGGAAACCTTTATCTTAGAGTGTATTTACAATTAAACCTTTTTACATATATTTGGTAATACATTTTCCTTCCACCAATCATTTTCTTGTTGTAGAATTCTATCATATATAACATCAGTTTAATTCTATCATATATAACATCAGTTTTCTTTAGTAAGGAGAAGTCTTTAGAGCATCAAACAATAATCAACAAATTAATGGTGGGAAAATACTCATTAATTCTCATTCAAATGGATAAGAAAGGATTTTGCTCCAACAAAATCCACTCATCCTACAAATTTTATAAGGACATAGTACTATAGAAAAAGAAAAGAAAAAAAAAAGAAACTCATTATTATCATATAACTTTTTTATTCATCATATGCTAGCTCACTTAGAAAACGTTTACAAATCACAAATGGCTAAAACGTCCTTACAAACCACAAATCTTCTTAATCACACCCATGTCAGCAGGGGGAATCTTTTGAAAAATTTCGGGAGCACAGTCGTTTAGCTTAGAAATGGCTTTACAACAAGAAGGATGAGGAGCAACTGGAAGCTTGATAACACTTGCCACACACAACGTCGCCTCTAAAATAAAAGGAGCACATTTAGAGATAGGGAAATTTTCTGGAACTGATGGACCAGGTGCTGCAGCTGTCGTGCTGGCCATCGTCGATGGTGCTAAAATTGCTATACAAACAAGGAACATAAGTGTTAACTTCATTGTGGATACATTCAGTGACTTTGCCGCCATTGTTTGTAGAAAAATGAGTGTGGAGTTCTAGAGAATTAGATAATCTTCAGCTTTGTTTGTATGAGAAAGTTGTGAAGTGTGAGTCTCTTATATAGGGGAAGATATGGAGTTGGAGTTTTGGCATATTTATGGCCATTGAAATTACCAATCTTGTTGATGCACTTTTGTTCTTTAAGGATTCCAACCTAAGTATAACTCAATTGTTAAGATGTATGACCTCAACGAAAATGTCAGATTAACAAAATTGCAATGGAGAGATATAAAATCATCTAATAAAGTATGCTTGAATTAGTCGATAATTATTATTTTTTCTAGTTGAAGGTTTAATTTCTTATACCACTTTATATTATATTTATTGTTATGATATTAATTAGGTATAATGAATTCTATTAGAATACTTATTTATTAAATAATTACATAATTAACCAATTAAGTATATAATTCTAATTTTATATAAAGCTTAAAAGGAATAGATTCATATGATGTTATTTTATTAGAATAGAAATTATAGAATTCTAAATCAGAGAGAAAATAAGTGAAGGTTAATTAATAACAAGAACGTAAGTCTCATTTAGAAACCCTAGAACTAGCATTCAATTGGTATACAAGTGTCTTAGTAACATTAGGTATGTGGTTCGAATCCTGCTACCTCTAATTGTAATAAAAAAAATAATTATAAATTTCATCTATTGACGAGATAAATCAAATTTAAGAATTAAGTAATTAAAACCTCTTGGTCACTAACACTCTTGTATGTCAGTTGAGTTATGTTCTCTAAGATTAGTAATGGACGCATAGCTGCTATATATGGTGATACCATATTTGTAAAACTTTCCTTTTAAAGTTATCTACATTCTAGAACCGGGTTTTTAGGGTTGTGTGTTTGGTAACTACTTGTTTTCTTGATTTTTTTTAACAAGGCCAATTTGGTACCTACATTCTAATAACAATTTTGTTTAAAAAAAATAATAATTTAGTATTGCAATTTATTAGTTTCTATATTTTGTTGTCTTTATTTTTAATTTTTGGCTTTTGAACTTTCTTAAATAAAAGAGTTGAATTCTTAACTAAGTTCCAAAAACAAACCAAAATTTAAAAAATTACTTTAACTAATTTTCAAAACATGGCTTGATTTGTAAAAACATTGGTAAAAAGTAGATAACAAAGTAAAAAACTTGTTCTAACTGTAACCAACTAAGTTAGCTTATTCAAGAGCTCTCGGATAAGTTTGGGCACTAGGTCAAATAAATGAGGTTTACTTTATTATCGCAATCCTTGCCGCCCTTCTTTCTTATTATTAGTAAGATAGGGTTCCAGTACACAAACAAGGTGTGCTAGAGTTTCTCTCTCAATCTTGTCCCACAGTTTAGTGGGTTCCATTACACAAACAAGGTGGATGGGTTTAGGGAAGACGATTTCAAAGTGGATCCATTGTTTTTTTACCCTGCAAAGATATCAATGGTTTATGGTATGAGATGGTGTACTTTTGATGAATCAAATCACTCGAAAAGGAAAGCGTACTGATCGACGTATCAATGTTCAGATTGTAACACATTAAGATGTCAATAATCAAGAACATAATAAGATTCGTTTTTCTCCTTCTTTTGTACTAAGGGAGTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGATTTTTTTTTTTTTTTTTTTTTAACAATTGTATACCAAATGATTGAATTTTCATTTTTCAAATCACATCAACAGAGCCTAAGTTAAAAAAAAATTGATAAAAAACAAAATAAAAGTATGTAACTATTACTAAAAAAACAAATATGAAAAAGATACTTGATCGATTCAGATTCTATTACTATACATGGTCATGGAGATACCGAATTTGTAAAAACTTTTCTTCTATACTATTAAATGGCATAAAAGTCATCAGACAACCAAATATTTTATGGAATCTAAATGTTAAACACTTTTTTCATTTTACAAACAAATTGATGTCAGGCTCAAAGTATAAAGTTTAAATTAAAAATTTAGGGTGTGTTTGGAATAAAATTTTAAAGTATTTAATTTAAAAAATAAATAATTTAAAAAAAAAATGAAAAATTTGACAACCGTAATTTAAATAGTTTTTAATCAAAAGAGTTTAAATAAAAATAAATTTTTTGAAAAATTCAATCTTAAGTCAAACTACTCTTAAGCATGCTTGATAACCAAGTAGATGTTATTAAGATTTTTTTTAAGATAATTTTTTATTAAGATTTTATTAAGATTTTATAAGATATATCTTAGTATACGTATTTTAATTTTTGAATGAAAGGATGGGATAAGGATTTGGCTTATATTTTATAATGAAATGGAAACATTGACACAACTTTCTGAATTAAACACCAAAAATAAATTTTTAAAGAGTGCCAACCTAAATTTAACTCATGATTGACCACTCGATTTTTTTTTCCTAAAAAAAATCACTAAACCTGAAATATTGAGCCCCTCCATTGGTTGTAAAATAATAAGAATAATTGTTTTAACTGATAAAAATGTTGAAAATATTTTCAAATATAACAAAATGTCACTGTCTATCAATGATAGACACTTATAGATACTGATGATAGATTATCATCTATTACTGTCTATTGTGATATTTTGCTATATTTGTAAATATTTTGGCTCATTTTGTTATATTTGAAAACAACCCAAATAATAATAATAATAATAATCGGTGCTTGTGGTCCCTAAGTTTTCAAAATGTACCTTTTTAGTCCACAAGTTTTAAAAAAAATCGGTTTAAAAGGTTCCTCAAATAATTTATTATTATTATTTAAAATAATTATATGACATTTTAAATTAGAAAAATAATTTTTTAAAAAAATTATCACTTCTCAGTTCACTCTAAATATATTTTTGAAAATATACATTTTCAATTTTAAATATCATACAATGTTTTTAAACATTAAAAAAAATACTTCAAAAATCTTTTAAACCTATACTTAAAAATTCAGGGACTAACATTGTAAATTATGAAAACTGAGGGACCAAATGCATCTATTCTTAAAAATTTGAAGACTCAAAGATACAGGTTTTATAACTTAGGGACTAAAAACACATATTCTACAAAACATGGAGATAAAAAGGTAATTTTTCCTTCCCATTTTATAGGTAGGTTTCAAAAGGTTACACTTTTACCTTTTGATTTTGATATGCAATTTCTATTAGATTTTCAATTTCAAAATGTTACATTTTTTTTTCTTGAGTTTGTAGTTTTGTTTCCATTTCGTCTAAATGCTTCAAAATTTATACTTTTACCCTTGATTTTACACTAAATACTCATTTTCTGTCCTTCATGTTAATGTATATTAATTAATTTAAAATAATTATAATTAAATTCATTTTCACTAAAAAAAATTTACATCTAATTATTCTAAATTAATTAATTAAAAATTAATGTCAAATACCTAAAGTGAGCATTAGTGAAAAATCAAGAGTAAGAGTGTAAATTACTGAAATTGAGAGAAAAAATTAAAATGAAAAAGATTCTATTTCTATATATAGTCATGGAGATACCAAAATTGTAAAAACTTTCCTTTTAAACTGTTAAAAGTCACAAAAGTCATAGTACAACAAAACATTCTATGGAATCTAAATTCTAGAAACATTTTTCTTTTTACAGCTAACAATGAGTGGGGAATACATATTTGGTGCTAG

mRNA sequence

ATGTATAGGACCAACTGGGACATTGGTCATGTTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTATAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAACGTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTAACCATTATTGTAGCTCACCATATAATTCTATCATATATAACATCAGTTTTCTTTAGTGCTGCAGCTGTCGTGCTGGCGATCGTCGATGGTGCTAAAATTGCTATACAAGCAAGGAATATAAGTGTTAACTTCATTGTGGATACGTTCAGTGACTTTGGTGCCATTAATTCTATCATATATAACATCAGTTTAATTCTATCATATATAACATCAGTTTTCTTTAGTGCTGCAGCTGTCGTGCTGGCCATCGTCGATGGTGCTAAAATTGCTATACAAACAAGGAACATAAGTGTTAACTTCATTGTGGATACATTCAGTGACTTTGCCGCCATTGTTTGTAGAAAAATGAGATTCCAACCTAAGTATAACTCAATTGTTAAGATGTATGACCTCAACGAAAATGTCAGATTAACAAAATTGCAATGGAGAGATATAAAATCATCTAATAAAAACCGGGTTTTTAGGGTTGTGTGTTTGTTTAGTGGGTTCCATTACACAAACAAGGTGGATGGGTTTAGGGAAGACGATTTCAAAGTGGATCCATTGTTTTTTTACCCTGCAAAGATATCAATGGTTTATGCTAACAATGAGTGGGGAATACATATTTGGTGCTAG

Coding sequence (CDS)

ATGTATAGGACCAACTGGGACATTGGTCATGTTATAAAAGATATTTTAGAGGCTCATAAAGGTCCATTTATAGGCCAGGGCCATAAAGGACTATATGAGATCCTAACAACGTCATGGCATGCTCAATTATCTATTAACCTAGCTATGTTAGGCTCTTTAACCATTATTGTAGCTCACCATATAATTCTATCATATATAACATCAGTTTTCTTTAGTGCTGCAGCTGTCGTGCTGGCGATCGTCGATGGTGCTAAAATTGCTATACAAGCAAGGAATATAAGTGTTAACTTCATTGTGGATACGTTCAGTGACTTTGGTGCCATTAATTCTATCATATATAACATCAGTTTAATTCTATCATATATAACATCAGTTTTCTTTAGTGCTGCAGCTGTCGTGCTGGCCATCGTCGATGGTGCTAAAATTGCTATACAAACAAGGAACATAAGTGTTAACTTCATTGTGGATACATTCAGTGACTTTGCCGCCATTGTTTGTAGAAAAATGAGATTCCAACCTAAGTATAACTCAATTGTTAAGATGTATGACCTCAACGAAAATGTCAGATTAACAAAATTGCAATGGAGAGATATAAAATCATCTAATAAAAACCGGGTTTTTAGGGTTGTGTGTTTGTTTAGTGGGTTCCATTACACAAACAAGGTGGATGGGTTTAGGGAAGACGATTTCAAAGTGGATCCATTGTTTTTTTACCCTGCAAAGATATCAATGGTTTATGCTAACAATGAGTGGGGAATACATATTTGGTGCTAG

Protein sequence

MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHHIILSYITSVFFSAAAVVLAIVDGAKIAIQARNISVNFIVDTFSDFGAINSIIYNISLILSYITSVFFSAAAVVLAIVDGAKIAIQTRNISVNFIVDTFSDFAAIVCRKMRFQPKYNSIVKMYDLNENVRLTKLQWRDIKSSNKNRVFRVVCLFSGFHYTNKVDGFREDDFKVDPLFFYPAKISMVYANNEWGIHIWC

Homology

[Close]

BLAST of Lsi06G010740 vs. ExPASy Swiss-Prot
Match: Q2QD89 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.2e-27
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy Swiss-Prot
Match: P58310 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lotus japonicus OX=34305 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.2e-27
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy Swiss-Prot
Match: A4GG97 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris OX=3885 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.2e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH
Sbjct: 308 MYRTNWGIGHSIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIVVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy Swiss-Prot
Match: Q2PMU3 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Glycine max OX=3847 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.2e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH
Sbjct: 308 MYRTNWGIGHSIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIVVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy Swiss-Prot
Match: P56766 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabidopsis thaliana OX=3702 GN=psaA PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy TrEMBL
Match: A0A4Y5PPN6 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Galphimia angustifolia OX=1561780 GN=psaA PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGHVIKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTI+VAHH
Sbjct: 308 MYRTNWGIGHVIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIVVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy TrEMBL
Match: A0A6A5LHH2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Lupinus albus OX=3870 GN=Lal_00000937 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH +KDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH
Sbjct: 324 MYRTNWGIGHGLKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIVVAHH 383

Query: 61  I 62
           +
Sbjct: 384 M 384

[Close]

BLAST of Lsi06G010740 vs. ExPASy TrEMBL
Match: V7AR62 (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G068700g PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
          MYRTNW IGH IKDILEAHKGPFIGQGH+GLYEILTTSWHAQLSINLAMLGSLTI+VAHH
Sbjct: 1  MYRTNWGIGHSIKDILEAHKGPFIGQGHRGLYEILTTSWHAQLSINLAMLGSLTIVVAHH 60

Query: 61 I 62
          +
Sbjct: 61 M 61

[Close]

BLAST of Lsi06G010740 vs. ExPASy TrEMBL
Match: A0A0Y0UIR7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Ladeania lanceolata OX=109222 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHSIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. ExPASy TrEMBL
Match: A0A4D6JE79 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cullen corylifolium OX=429560 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHSIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. NCBI nr
Match: YP_009668986.1 (photosystem I P700 apoprotein A1 [Galphimia angustifolia] >QCW93984.1 photosystem I P700 apoprotein A1 [Galphimia angustifolia])

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGHVIKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTI+VAHH
Sbjct: 308 MYRTNWGIGHVIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIVVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. NCBI nr
Match: XP_007134697.1 (hypothetical protein PHAVU_010G068700g, partial [Phaseolus vulgaris] >ESW06691.1 hypothetical protein PHAVU_010G068700g, partial [Phaseolus vulgaris])

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
          MYRTNW IGH IKDILEAHKGPFIGQGH+GLYEILTTSWHAQLSINLAMLGSLTI+VAHH
Sbjct: 1  MYRTNWGIGHSIKDILEAHKGPFIGQGHRGLYEILTTSWHAQLSINLAMLGSLTIVVAHH 60

Query: 61 I 62
          +
Sbjct: 61 M 61

[Close]

BLAST of Lsi06G010740 vs. NCBI nr
Match: KAE9586345.1 (Photosystem I P700 chlorophyll a apoprotein A1 [Lupinus albus] >KAF1859110.1 hypothetical protein Lal_00000937 [Lupinus albus])

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH +KDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTI+VAHH
Sbjct: 324 MYRTNWGIGHGLKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIVVAHH 383

Query: 61  I 62
           +
Sbjct: 384 M 384

[Close]

BLAST of Lsi06G010740 vs. NCBI nr
Match: YP_009771156.1 (photosystem I P700 chlorophyll a apoprotein A1 [Orbexilum onobrychis] >QIT01858.1 photosystem I P700 chlorophyll a apoprotein A1 [Orbexilum onobrychis])

HSP 1 Score: 122.5 bits (306), Expect = 5.4e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHSIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. NCBI nr
Match: YP_009649363.1 (photosystem I P700 apoprotein A1 [Cullen corylifolium] >QCD16463.1 photosystem I P700 apoprotein A1 [Cullen corylifolium])

HSP 1 Score: 122.5 bits (306), Expect = 5.4e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHSIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAHKGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVAHH 60
           MYRTNW IGH IKDILEAHKGPF GQGHKGLYEILTTSWHAQLS+NLAMLGSLTIIVAHH
Sbjct: 308 MYRTNWGIGHGIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHH 367

Query: 61  I 62
           +
Sbjct: 368 M 368

[Close]

BLAST of Lsi06G010740 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 68.6 bits (166), Expect = 8.6e-12
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1   MYRTNWDIGHVIKDILEAH--KGPFIGQGHKGLYEILTTSWHAQLSINLAMLGSLTIIVA 60
           MYRTN+ IGH IKD+LEAH   G  +G+GHKGLY+ +  S H QL + LA LG +T +VA
Sbjct: 290 MYRTNFGIGHSIKDLLEAHIPPGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVA 349

Query: 61  HHI----ILSYITSVFFSAAAV 77
            H+      ++I   F + AA+
Sbjct: 350 QHMYSLPAYAFIAQDFTTQAAL 371

The following BLAST results are available for this feature:

BLAST of Lsi06G010740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD89	9.2e-27	93.44	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa...	[more]
P58310	9.2e-27	93.44	Photosystem I P700 chlorophyll a apoprotein A1 OS=Lotus japonicus OX=34305 GN=ps...	[more]
A4GG97	9.2e-27	91.80	Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris OX=3885 GN=...	[more]
Q2PMU3	9.2e-27	91.80	Photosystem I P700 chlorophyll a apoprotein A1 OS=Glycine max OX=3847 GN=psaA PE...	[more]
P56766	1.6e-26	91.80	Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lsi06G010740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y5PPN6	1.2e-24	91.80	Photosystem I P700 chlorophyll a apoprotein A1 OS=Galphimia angustifolia OX=1561...	[more]
A0A6A5LHH2	2.0e-24	91.80	Photosystem I P700 chlorophyll a apoprotein A1 OS=Lupinus albus OX=3870 GN=Lal_0...	[more]
V7AR62	2.0e-24	91.80	Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G06...	[more]
A0A0Y0UIR7	2.6e-24	93.44	Photosystem I P700 chlorophyll a apoprotein A1 OS=Ladeania lanceolata OX=109222 ...	[more]
A0A4D6JE79	2.6e-24	93.44	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cullen corylifolium OX=429560 ...	[more]

BLAST of Lsi06G010740 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009668986.1	2.4e-24	91.80	photosystem I P700 apoprotein A1 [Galphimia angustifolia] >QCW93984.1 photosyste...	[more]
XP_007134697.1	4.1e-24	91.80	hypothetical protein PHAVU_010G068700g, partial [Phaseolus vulgaris] >ESW06691.1...	[more]
KAE9586345.1	4.1e-24	91.80	Photosystem I P700 chlorophyll a apoprotein A1 [Lupinus albus] >KAF1859110.1 hyp...	[more]
YP_009771156.1	5.4e-24	93.44	photosystem I P700 chlorophyll a apoprotein A1 [Orbexilum onobrychis] >QIT01858....	[more]
YP_009649363.1	5.4e-24	93.44	photosystem I P700 apoprotein A1 [Cullen corylifolium] >QCD16463.1 photosystem I...	[more]

BLAST of Lsi06G010740 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	1.1e-27	91.80	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	8.6e-12	47.56	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..76 e-value: 1.5E-26 score: 94.4
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 1..62
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..62 e-value: 3.1E-26 score: 91.8
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..63
None	No IPR available	PANTHER	PTHR30128:SF49	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010740.1	Lsi06G010740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding