Lsi06G010300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 20456242 .. 20456559 (-)
RNA-Seq Expression	Lsi06G010300
Synteny	Lsi06G010300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACCAAGCCTATGAGCACATCCACAATAAAGATATCACTTATATTCTTTGTATGCATAGACATTTTGGCACCATTAGTGACGGCTCGCACAGTGGCAGTAGCACCTAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCACACCGTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTTCAACTGGTCCTCATCCTTCATGTTGCAAAGCCATTTCTGAGCTCAACAACTGCTCCCCCGAAATTTACCAACATATTCCTGACATGGATGTGATTAAGAAATTTTGTGGTCACTGA

mRNA sequence

ATGGAGACCAAGCCTATGAGCACATCCACAATAAAGATATCACTTATATTCTTTGTATGCATAGACATTTTGGCACCATTAGTGACGGCTCGCACAGTGGCAGTAGCACCTAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCACACCGTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTTCAACTGGTCCTCATCCTTCATGTTGCAAAGCCATTTCTGAGCTCAACAACTGCTCCCCCGAAATTTACCAACATATTCCTGACATGGATGTGATTAAGAAATTTTGTGGTCACTGA

Coding sequence (CDS)

ATGGAGACCAAGCCTATGAGCACATCCACAATAAAGATATCACTTATATTCTTTGTATGCATAGACATTTTGGCACCATTAGTGACGGCTCGCACAGTGGCAGTAGCACCTAGTCCATTAGTACCAGAAGATTTATCTTTCTCTAACTGCACACCGTTTATCTTAGATGCGACAATGTGTGTGGTAAGTGTGATCAAACTTTCAACTGGTCCTCATCCTTCATGTTGCAAAGCCATTTCTGAGCTCAACAACTGCTCCCCCGAAATTTACCAACATATTCCTGACATGGATGTGATTAAGAAATTTTGTGGTCACTGA

Protein sequence

METKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCGH

Homology

[Close]

BLAST of Lsi06G010300 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.4e-34
Identity = 76/102 (74.51%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 2   ETKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCV 61
           E + MST  +KISL F V + ILAP  TA TVA APSPL  EDLSFSNCTPFILDATMCV
Sbjct: 3   ENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCV 62

Query: 62  VSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFC 104
           VSVIK    PHPSCCKAIS+LN+CSPE+YQHIP MDVIKK C
Sbjct: 63  VSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKIC 104

[Close]

BLAST of Lsi06G010300 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 0


Query: 3   TKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLV----PEDLSFSNCTPFILDAT 62
           TK  S STI+++++F VCI ILAP VTART+A APSP++     +D SFSNC PFIL+AT
Sbjct: 4   TKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEAT 63

Query: 63  MCVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCG 105
           MCVV VIKL    HPSCCKAIS+LN+C+P+IYQHIPDMDVIKK CG
Sbjct: 64  MCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICG 109

[Close]

BLAST of Lsi06G010300 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 4   KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMC 63
           K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCG 105
           +V VIKL   PHPSCCKAIS+LN+C+PEIYQHIP MDVIKK CG
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICG 108

[Close]

BLAST of Lsi06G010300 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 4   KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMC 63
           K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCG 105
           +V VIKL   PHPSCCKAIS+LN+C+PEIY HIP MDVIKK CG
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKICG 108

[Close]

BLAST of Lsi06G010300 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   METKPMSTSTIKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATM 60
           M  + ++ S +K+ L+F VCI ILAP  T A T A APSP VP++  F  C PFIL+AT+
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHI--PDMDVIKKFC 104
           CV  VIK    PHPSCCKAIS+LN+C+PEIYQ I  PDMDVIKK C
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

[Close]

BLAST of Lsi06G010300 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 76/102 (74.51%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 2   ETKPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSPLVPEDLSFSNCTPFILDATMCV 61
           E + MST  +KISL F V + ILAP  TA TVA APSPL  EDLSFSNCTPFILDATMCV
Sbjct: 3   ENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCV 62

Query: 62  VSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFC 104
           VSVIK    PHPSCCKAIS+LN+CSPE+YQHIP MDVIKK C
Sbjct: 63  VSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKIC 104

[Close]

BLAST of Lsi06G010300 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 8.3e-32
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 4   KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMC 63
           K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCG 105
           +V VIKL   PHPSCCKAIS+LN+C+PEIYQHIP MDVIKK CG
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICG 108

[Close]

BLAST of Lsi06G010300 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-31
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 4   KPMSTSTIKISLIFFVCIDILAPLVTARTVAVAPSP---LVPEDLSFSNCTPFILDATMC 63
           K  S STI+++L+F VCI ILAP VTA T+A APSP   L+ +D SFSNC PFIL+ATMC
Sbjct: 5   KSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMC 64

Query: 64  VVSVIKLSTGPHPSCCKAISELNNCSPEIYQHIPDMDVIKKFCG 105
           +V VIKL   PHPSCCKAIS+LN+C+PEIY HIP MDVIKK CG
Sbjct: 65  MVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKICG 108

[Close]

BLAST of Lsi06G010300 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   METKPMSTSTIKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATM 60
           M  + ++ S +K+ L+F VCI ILAP  T A T A APSP VP++  F  C PFIL+AT+
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVSVIKLSTGPHPSCCKAISELNNCSPEIYQHI--PDMDVIKKFC 104
           CV  VIK    PHPSCCKAIS+LN+C+PEIYQ I  PDMDVIKK C
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

[Close]

BLAST of Lsi06G010300 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.6e-22
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 11  IKISLIFFVCIDILAPLVT-ARTVAVAPSPLVPEDLSFSNCTPFILDATMCVVSVIKLST 70
           +K+ L+F VCI ILAP  T A T A APSP VP++  F  C PFIL+AT+CV  VIK   
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  GPHPSCCKAISELNNCSPEIYQHIP--DMDVIKKFC 104
            PHPSCCKAIS+L +C+P+IYQ IP  DM+VIKK C
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTC 96

The following BLAST results are available for this feature:

BLAST of Lsi06G010300 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U475	7.4e-34	74.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LTD6	1.8e-32	67.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
A0A5D3CGL7	4.0e-32	69.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4A7	1.5e-31	68.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9A1	1.6e-25	59.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi06G010300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050068.1	1.5e-33	74.51	hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]	[more]
TYK10344.1	8.3e-32	69.23	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]
KAA0050064.1	3.2e-31	68.27	hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]	[more]
KAA0050069.1	3.4e-25	59.43	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	4.6e-22	60.42	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi06G010300 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010300.1	Lsi06G010300.1	mRNA