Lsi04G004220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G004220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr04: 4049941 .. 4052310 (-)
RNA-Seq ExpressionLsi04G004220
SyntenyLsi04G004220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGACACGTGGGTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGCTCAAGTCCTTTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCATGTGCGAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCGCGAGGAGTGTTTGATGAAATGGAGCAGCCATGCATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTCTGTTGGGAGCACTAGACCTAGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCAAAATGTGGAAGTCTAGCTGATGCTATTTCTATCTTTGAGGGCATGCGTGTGAGAGATACACAAGCTTGGTCTGCAATGATGGTTGCATTTGCAACTCATGGGAATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCTGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAACAGGTCATTTAGATGAGGCTTATAACTTCATAGATGAACTGGAAATTAAGCCCACGCCTATACTCTGGCGCACCCTGTTGTCTGCTTGCAGTACCCATGGTAATGTCGACATGGCAAAGCGGGTTATTGAAAGAATTTTTGAATTAGATGACTCCCATGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTAGAGTTGCGGCGAGCACTTGACGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCTTGAGATATCACAGTGAAAAATTGGCCATGGCTTTTGGGCTCCTAAATACACCTCCTGGTACAACGATAAGGGTAGTTAAGAACCTCCGTATTTGTGGAGATTGTCATAATGCTGCAAAACTTATATCTTTAATATTTGGGAGGCAAATTGTCATTAGGGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGGTAATGGACTATGTAGAAATCACAGGCTATTCTTACAGTTTGATATTTCTTTCCTGCAATGGCCATGATTTCCTATTCATTTAGTGTATCTTCATGGGGAACCATTATGTTTGTATAGCAACCAAGGAATTCAGCCATATATTTATCCGCGTAGCATTGATCATTGCATGTATTGGATCAAAATAAAGTATATAACCATCGGCTGAACATATTTCTACACCATCATTACACCGTATGTCAACACGAGCTTAGCTGAACGGTAATTGGTATGTACTCCTTTCTTTGAAGTCGGATAATAAAATCTTCATACCCCGCATTAACGGTAGGATGAACATATTTCTAGATCATCAACTGACTTACTTTTAAATAACATACCATCAACTGACTTGTTTTCTATACTTCCTTTGACAGTCAACCATGGATTTTGGTTGCTATTTATGGCCAAAGTCATTATGCTCCTTCTAATTACAATCAAAGGACAGAAGTTGAATGATGAACTTTACCATCTATTACCCTTCCTTATTTACTGCAGTAGCCAATTCTAGATACAGTACAGAAGATCAAACATTGGAAACTCATAAAGTTTGTTCCAAATTTCCGATTATGACTGTTTTTAATTTAATGCTTTACCTATATTTAGCGTGGAAAGATTTCTTGAGCATTATCACTCTTTCTTTCTATGTACTAATTTTTTTAATTGTTTCTTTAATAAATTATTTATCATAAATTTTGTATCCTCAGTTACGTCCTCGTGAAGTCGTGGAAAATTTATGATTTATTTGCTGCACTTAATTAA

mRNA sequence

ATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGACACGTGGGTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGCTCAAGTCCTTTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCATGTGCGAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCGCGAGGAGTGTTTGATGAAATGGAGCAGCCATGCATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTCTGTTGGGAGCACTAGACCTAGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCAAAATGTGGAAGTCTAGCTGATGCTATTTCTATCTTTGAGGGCATGCGTGTGAGAGATACACAAGCTTGGTCTGCAATGATGGTTGCATTTGCAACTCATGGGAATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCTGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAACAGGTCATTTAGATGAGGCTTATAACTTCATAGATGAACTGGAAATTAAGCCCACGCCTATACTCTGGCGCACCCTGTTGTCTGCTTGCAGTACCCATGGTAATGTCGACATGGCAAAGCGGGTTATTGAAAGAATTTTTGAATTAGATGACTCCCATGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTAGAGTTGCGGCGAGCACTTGACGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCTTGAGATATCACAGTGAAAAATTGGCCATGGCTTTTGGGCTCCTAAATACACCTCCTGGTACAACGATAAGGGTAGTTAAGAACCTCCGTATTTGTGGAGATTGTCATAATGCTGCAAAACTTATATCTTTAATATTTGGGAGGCAAATTGTCATTAGGGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGTTACGTCCTCGTGAAGTCGTGGAAAATTTATGATTTATTTGCTGCACTTAATTAA

Coding sequence (CDS)

ATGGACCATGCCCACCATCTGTTCGATCAAATTCCTGACAAGGATATTGTCCTCTTTAACATAATGACACGTGGGTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGCTCAAGTCCTTTGCTCTGGCCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCATGTGCGAGTTCTAAGGCCTTGAAAGAAGGTATGGAGTTGCATTGTTTTGCTATTAAACTTGGACTGAATCATAATATTTACATATGCCCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCAGCGCGAGGAGTGTTTGATGAAATGGAGCAGCCATGCATTGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAGCAATCTTGAGCCTACTGATGTTACTATGCTTAGTGTAATTATGTCATGTGCTCTGTTGGGAGCACTAGACCTAGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATATGTTTGCAAAATGTGGAAGTCTAGCTGATGCTATTTCTATCTTTGAGGGCATGCGTGTGAGAGATACACAAGCTTGGTCTGCAATGATGGTTGCATTTGCAACTCATGGGAATGGCTTGAAAGCTATCTCAATGTTTGAAGAGATGAAGAGGGCAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCTGGGCTAGTAGAGCAAGGTAGAGGGTATTTCTATAGTATGTCTAAAAACTATGGAATAACTCCAGGGATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAACAGGTCATTTAGATGAGGCTTATAACTTCATAGATGAACTGGAAATTAAGCCCACGCCTATACTCTGGCGCACCCTGTTGTCTGCTTGCAGTACCCATGGTAATGTCGACATGGCAAAGCGGGTTATTGAAAGAATTTTTGAATTAGATGACTCCCATGGAGGGGACTATGTTATATTATCAAACTTGTGTGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCATTTCGGTAGAGTTGCGGCGAGCACTTGACGAGTTAATCAAAGAAATAAAGTTGGTGGGATATGTTCCTGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCTTGAGATATCACAGTGAAAAATTGGCCATGGCTTTTGGGCTCCTAAATACACCTCCTGGTACAACGATAAGGGTAGTTAAGAACCTCCGTATTTGTGGAGATTGTCATAATGCTGCAAAACTTATATCTTTAATATTTGGGAGGCAAATTGTCATTAGGGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGTTACGTCCTCGTGAAGTCGTGGAAAATTTATGATTTATTTGCTGCACTTAATTAA

Protein sequence

MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKACASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDFCYVLVKSWKIYDLFAALN
Homology
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BLAST of Lsi04G004220 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 777.7 bits (2007), Expect = 8.5e-224
Identity = 359/524 (68.51%), Postives = 436/524 (83.21%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           M +A HLF+ + + DIV+FN M RGY+R  +P   FSLF ++L  G+LPD+YTF SLLKA
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA +KAL+EG +LHC ++KLGL+ N+Y+CPTLINMY EC D+++AR VFD + +PC+V Y
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY 198

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NA+ITGYAR ++PNEALSLFRE+Q   L+P ++T+LSV+ SCALLG+LDLG+WIH+Y KK
Sbjct: 199 NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKK 258

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
             F KYVKVNTALIDMFAKCGSL DA+SIFE MR +DTQAWSAM+VA+A HG   K++ M
Sbjct: 259 HSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FE M+   V+PDEITFLGLL ACSH G VE+GR YF  M   +GI P IKHYG MVDLL 
Sbjct: 319 FERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLS 378

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G+L++AY FID+L I PTP+LWR LL+ACS+H N+D+A++V ERIFELDDSHGGDYVI
Sbjct: 379 RAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVI 438

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL AR  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV   + +L RA
Sbjct: 439 LSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRA 498

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDE++KE+KL GYVPDTS+V HA+M ++ KE+ LRYHSEKLA+ FGLLNTPPGTTIRVVK
Sbjct: 499 LDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVK 558

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLR+C DCHNAAKLISLIFGR++V+RDVQRFH FEDGKCSCGDF
Sbjct: 559 NLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDF 602

[Close]
BLAST of Lsi04G004220 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 4.2e-138
Identity = 227/526 (43.16%), Postives = 348/526 (66.16%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           +++A  LFD+IP KD+V +N M  GYA + +   A  LF  ++ + + PD+ T  +++ A
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA S +++ G ++H +    G   N+ I   LI++Y++C ++  A G+F+ +    ++S+
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           N +I GY   +   EAL LF+E+  S   P DVTMLS++ +CA LGA+D+GRWIH Y+ K
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395

Query: 181 --KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAI 240
             KG      + T+LIDM+AKCG +  A  +F  +  +   +W+AM+  FA HG    + 
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 455

Query: 241 SMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDL 300
            +F  M++ G++PD+ITF+GLL ACSH+G+++ GR  F +M+++Y +TP ++HYGCM+DL
Sbjct: 456 DLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515

Query: 301 LGRTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDY 360
           LG +G   EA   I+ +E++P  ++W +LL AC  HGNV++ +   E + +++  + G Y
Sbjct: 516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSY 575

Query: 361 VILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELR 420
           V+LSN+ A  GRW +V   R L+ D+G+ KVPGCSS+E+++VVHEF  GD  H  + E+ 
Sbjct: 576 VLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 635

Query: 421 RALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV 480
             L+E+   ++  G+VPDTS V   +MEEE KE  LR+HSEKLA+AFGL++T PGT + +
Sbjct: 636 GMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 695

Query: 481 VKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           VKNLR+C +CH A KLIS I+ R+I+ RD  RFH F DG CSC D+
Sbjct: 696 VKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740

[Close]
BLAST of Lsi04G004220 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 5.9e-132
Identity = 226/524 (43.13%), Postives = 340/524 (64.89%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           ++ A  LFD + ++++V +N M   Y ++ +P  A  +F ++L  G+ P D +    L A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA    L+ G  +H  +++LGL+ N+ +  +LI+MY +C +++ A  +F +++   +VS+
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NA+I G+A++ +P +AL+ F ++++  ++P   T +SVI + A L      +WIH  V +
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
              DK V V TAL+DM+AKCG++  A  IF+ M  R    W+AM+  + THG G  A+ +
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEM++  ++P+ +TFL ++ ACSH+GLVE G   FY M +NY I   + HYG MVDLLG
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLG 586

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G L+EA++FI ++ +KP   ++  +L AC  H NV+ A++  ER+FEL+   GG +V+
Sbjct: 587 RAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVL 646

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           L+N+      WE V  +R  M  +G+ K PGCS VE+ N VH FFSG   H  S ++   
Sbjct: 647 LANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAF 706

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           L++LI  IK  GYVPDT+LV    +E + KE +L  HSEKLA++FGLLNT  GTTI V K
Sbjct: 707 LEKLICHIKEAGYVPDTNLV--LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRK 766

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLR+C DCHNA K ISL+ GR+IV+RD+QRFH F++G CSCGD+
Sbjct: 767 NLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDY 808

[Close]
BLAST of Lsi04G004220 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 1.4e-130
Identity = 221/525 (42.10%), Postives = 335/525 (63.81%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           ++ A  +F+++P +D V +  +  GY++ + P  A   F Q+L  G  P+++T SS++KA
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
            A+ +    G +LH F +K G + N+++   L+++Y     M+ A+ VFD +E    VS+
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NA+I G+AR S   +AL LF+ +      P+  +  S+  +C+  G L+ G+W+H Y+ K
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
            G          L+DM+AK GS+ DA  IF+ +  RD  +W++++ A+A HG G +A+  
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWW 350

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEM+R G+RP+EI+FL +L ACSH+GL+++G  ++Y + K  GI P   HY  +VDLLG
Sbjct: 351 FEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHYYELMKKDGIVPEAWHYVTVVDLLG 410

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G L+ A  FI+E+ I+PT  +W+ LL+AC  H N ++     E +FELD    G +VI
Sbjct: 411 RAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI 470

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           L N+ A  GRW D   +RK MK+ GV K P CS VE+ N +H F + D  H    E+ R 
Sbjct: 471 LYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARK 530

Query: 421 LDELIKEIKLVGYVPDTS-LVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVV 480
            +E++ +IK +GYVPDTS ++ H D +E  +E+ L+YHSEK+A+AF LLNTPPG+TI + 
Sbjct: 531 WEEVLAKIKELGYVPDTSHVIVHVDQQE--REVNLQYHSEKIALAFALLNTPPGSTIHIK 590

Query: 481 KNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           KN+R+CGDCH A KL S + GR+I++RD  RFH F+DG CSC D+
Sbjct: 591 KNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDY 632

[Close]
BLAST of Lsi04G004220 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 1.2e-129
Identity = 220/524 (41.98%), Postives = 345/524 (65.84%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           +D    +F+ +P KD+V +N +  GYA+S     A  +  ++  + L PD +T SS+L  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
            +    + +G E+H + I+ G++ ++YI  +L++MYA+   +  +  VF  +     +S+
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           N+++ GY ++ + NEAL LFR++  + ++P  V   SVI +CA L  L LG+ +H YV +
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
            GF   + + +AL+DM++KCG++  A  IF+ M V D  +W+A+++  A HG+G +A+S+
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKR GV+P+++ F+ +L ACSH GLV++  GYF SM+K YG+   ++HY  + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G L+EAYNFI ++ ++PT  +W TLLS+CS H N+++A++V E+IF +D  + G YV+
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           + N+ A  GRW+++  LR  M+ +G+ K P CS +E+ N  H F SGD  H    ++   
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           L  ++++++  GYV DTS V H D++EE K  +L  HSE+LA+AFG++NT PGTTIRV K
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLH-DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTK 671

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           N+RIC DCH A K IS I  R+I++RD  RFH F  G CSCGD+
Sbjct: 672 NIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDY 714

[Close]
BLAST of Lsi04G004220 vs. ExPASy TrEMBL
Match: A0A0A0KU15 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605160 PE=3 SV=1)

HSP 1 Score: 1037.3 bits (2681), Expect = 2.2e-299
Identity = 496/524 (94.66%), Postives = 512/524 (97.71%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFDQI DKDI+LFNIM RGYARSNSPYLAFSLF ++LCSGLLPDDYTFSSLLKA
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKAL+EGM LHCFA+KLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQASN+EPTDVTMLSVIMSCALLGALDLG+WIHEYVKK
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDKYVKVNTALIDMFAKCGSL DAISIFEGMRVRDTQAWSAM+VAFATHG+GLKAISM
Sbjct: 260 KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISM 319

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKR GVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK YGITPGIKHYGCMVDLLG
Sbjct: 320 FEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLG 379

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R GHLDEAYNF+D+LEIK TPILWRTLLSACSTHGNV+MAKRVIERIFELDD+HGGDYVI
Sbjct: 380 RAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVI 439

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC+SVELRRA
Sbjct: 440 LSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRA 499

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDEL+KEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV K
Sbjct: 500 LDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAK 559

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLIS IFGR+IVIRDVQRFHRFEDGKCSCGDF
Sbjct: 560 NLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDF 603

[Close]
BLAST of Lsi04G004220 vs. ExPASy TrEMBL
Match: A0A5A7STH8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00400 PE=3 SV=1)

HSP 1 Score: 1035.4 bits (2676), Expect = 8.4e-299
Identity = 494/524 (94.27%), Postives = 515/524 (98.28%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFDQI DKDI+LFNIM RGYARSNSPYLAFSLFAQ+LCSGLLPDDYTFSSLLKA
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKA 139

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKAL++GM LHCFA+KLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY
Sbjct: 140 CASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLSVIMSCALLGALDLG+WIHEYVKK
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDKYVKVNTALIDMFAKCGSL DAISIFEGMRVRDTQAWSAM+VAFATHG+GLK+IS+
Sbjct: 260 KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKSISI 319

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS+ YGITPGIKHYGCMVDLLG
Sbjct: 320 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSRTYGITPGIKHYGCMVDLLG 379

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAYNF+DELEIKPTPILWRTLLSACSTHGNV+MAKRVIERIFELDDSHGGDYVI
Sbjct: 380 RTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAKRVIERIFELDDSHGGDYVI 439

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC+SVELRRA
Sbjct: 440 LSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRA 499

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDEL+KEIKLVGY+PDTSLVYHADM+EEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV K
Sbjct: 500 LDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAK 559

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDGKCSCGDF
Sbjct: 560 NLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSCGDF 603

[Close]
BLAST of Lsi04G004220 vs. ExPASy TrEMBL
Match: A0A1S3BFK0 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489124 PE=3 SV=1)

HSP 1 Score: 1035.4 bits (2676), Expect = 8.4e-299
Identity = 494/524 (94.27%), Postives = 515/524 (98.28%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFDQI DKDI+LFNIM RGYARSNSPYLAFSLFAQ+LCSGLLPDDYTFSSLLKA
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKA 139

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKAL++GM LHCFA+KLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY
Sbjct: 140 CASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLSVIMSCALLGALDLG+WIHEYVKK
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDKYVKVNTALIDMFAKCGSL DAISIFEGMRVRDTQAWSAM+VAFATHG+GLK+IS+
Sbjct: 260 KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKSISI 319

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS+ YGITPGIKHYGCMVDLLG
Sbjct: 320 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSRTYGITPGIKHYGCMVDLLG 379

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAYNF+DELEIKPTPILWRTLLSACSTHGNV+MAKRVIERIFELDDSHGGDYVI
Sbjct: 380 RTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAKRVIERIFELDDSHGGDYVI 439

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC+SVELRRA
Sbjct: 440 LSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRA 499

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDEL+KEIKLVGY+PDTSLVYHADM+EEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV K
Sbjct: 500 LDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAK 559

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDGKCSCGDF
Sbjct: 560 NLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSCGDF 603

[Close]
BLAST of Lsi04G004220 vs. ExPASy TrEMBL
Match: A0A6J1DA68 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019083 PE=3 SV=1)

HSP 1 Score: 1012.3 bits (2616), Expect = 7.6e-292
Identity = 487/524 (92.94%), Postives = 504/524 (96.18%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFDQIPDKDIVLFNIM RGYARSN+PYLAFSLF+QVLCSGLLPDDYTFSSLLKA
Sbjct: 79  MDHAHHLFDQIPDKDIVLFNIMARGYARSNTPYLAFSLFSQVLCSGLLPDDYTFSSLLKA 138

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKA  EG +LHCFAIKLGLNHNIYICP+LIN+YAECNDMNAARGVFDEME PCIVSY
Sbjct: 139 CASSKAFSEGRQLHCFAIKLGLNHNIYICPSLINLYAECNDMNAARGVFDEMEAPCIVSY 198

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITG+ARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSCALLGALDLGRWIHEYVKK
Sbjct: 199 NAIITGHARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKK 258

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDK+VKVNTALIDM+AKCGSL DAISIFE MRVRDTQAWSAM+VA+ATHG+GLKAISM
Sbjct: 259 KGFDKFVKVNTALIDMYAKCGSLVDAISIFEDMRVRDTQAWSAMIVAYATHGDGLKAISM 318

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKRAGVRPDEITFLGLLYACSHAGLVE+GRGYF SMSK YGI PGIKHYGCMVDLLG
Sbjct: 319 FEEMKRAGVRPDEITFLGLLYACSHAGLVEEGRGYFNSMSKYYGIAPGIKHYGCMVDLLG 378

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTGHLDEAY FID  EIKPTPILWRTLLSACS  GNVD+AKRVIERIFELDDSHGGDYVI
Sbjct: 379 RTGHLDEAYKFIDGSEIKPTPILWRTLLSACSNRGNVDLAKRVIERIFELDDSHGGDYVI 438

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNLCARVGRWEDVNH+RKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVH ISVELRRA
Sbjct: 439 LSNLCARVGRWEDVNHIRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRA 498

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLA+AFGLLN+PPGT IRVVK
Sbjct: 499 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAIAFGLLNSPPGTPIRVVK 558

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCH AAKLIS IFGRQIVIRDVQRFHRFEDGKCSC DF
Sbjct: 559 NLRICGDCHTAAKLISFIFGRQIVIRDVQRFHRFEDGKCSCCDF 602

[Close]
BLAST of Lsi04G004220 vs. ExPASy TrEMBL
Match: A0A6J1HTT7 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467412 PE=3 SV=1)

HSP 1 Score: 1009.2 bits (2608), Expect = 6.4e-291
Identity = 484/524 (92.37%), Postives = 504/524 (96.18%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFD++ DKDIVLFNIM RGYARSNSPYL FSLFAQVLCSGLLPDDYTFSSLLKA
Sbjct: 74  MDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKA 133

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA SKAL+EG +LHCFAIKLG  HNIYICPTLINMYA CNDMNAARGVFD ME+PCIVSY
Sbjct: 134 CAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSY 193

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSCALLGALDLGRWIHEYVKK
Sbjct: 194 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKK 253

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDK+VKVNTALIDM+AKCGS+ DAISIFEGMRVRDTQAWSAM+VA+ATHG+GLKAISM
Sbjct: 254 KGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISM 313

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYFYSM KN+G+TPGIKHYGCMVDLLG
Sbjct: 314 FEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLG 373

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAY FIDEL IKPTPILWRTLLSACS HGNVD+AKRVIERIFELDDSHGGDYVI
Sbjct: 374 RTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVI 433

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNLCAR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVH ISVELRRA
Sbjct: 434 LSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRA 493

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDELI+EIKL GYVPDTSLVYHADMEEE KELVLRYHSEKLAMAFGLLNTPPGTTIRVVK
Sbjct: 494 LDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 553

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSC DF
Sbjct: 554 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]
BLAST of Lsi04G004220 vs. NCBI nr
Match: XP_038893049.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Benincasa hispida])

HSP 1 Score: 1040.8 bits (2690), Expect = 4.1e-300
Identity = 502/524 (95.80%), Postives = 514/524 (98.09%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MD+AHHLFDQI DKDIVLFNIM RGYARSNSP LAFSLFA+VL SGLLPDDYTFSSLLKA
Sbjct: 79  MDYAHHLFDQISDKDIVLFNIMARGYARSNSPNLAFSLFAKVLSSGLLPDDYTFSSLLKA 138

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKA K+GMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDE+EQPCIVSY
Sbjct: 139 CASSKAFKQGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEIEQPCIVSY 198

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQAS+LEPTDVTMLS+IMSCALLGALDLGRWIHEYVKK
Sbjct: 199 NAIITGYARSSQPNEALSLFRELQASHLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKK 258

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAM+VAFATHG+GLKAISM
Sbjct: 259 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISM 318

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKR GVRPDEITFLGLLYACSHAGLVEQGR YFY+MSKNYGITPGIKHYGCMVDLLG
Sbjct: 319 FEEMKRTGVRPDEITFLGLLYACSHAGLVEQGREYFYNMSKNYGITPGIKHYGCMVDLLG 378

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAYNFIDELEIKPTP+LWRTLLSACSTHGNVDMAKRV ERIFELDDSHGGDYVI
Sbjct: 379 RTGRLDEAYNFIDELEIKPTPVLWRTLLSACSTHGNVDMAKRVTERIFELDDSHGGDYVI 438

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA
Sbjct: 439 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 498

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK
Sbjct: 499 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 558

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLISLIFGRQI+IRDVQRFHRFE+GKCSC DF
Sbjct: 559 NLRICGDCHNAAKLISLIFGRQIIIRDVQRFHRFENGKCSCSDF 602

[Close]
BLAST of Lsi04G004220 vs. NCBI nr
Match: XP_031742214.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucumis sativus])

HSP 1 Score: 1037.3 bits (2681), Expect = 4.6e-299
Identity = 496/524 (94.66%), Postives = 512/524 (97.71%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFDQI DKDI+LFNIM RGYARSNSPYLAFSLF ++LCSGLLPDDYTFSSLLKA
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKAL+EGM LHCFA+KLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQASN+EPTDVTMLSVIMSCALLGALDLG+WIHEYVKK
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDKYVKVNTALIDMFAKCGSL DAISIFEGMRVRDTQAWSAM+VAFATHG+GLKAISM
Sbjct: 260 KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISM 319

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKR GVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSK YGITPGIKHYGCMVDLLG
Sbjct: 320 FEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLG 379

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R GHLDEAYNF+D+LEIK TPILWRTLLSACSTHGNV+MAKRVIERIFELDD+HGGDYVI
Sbjct: 380 RAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVI 439

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC+SVELRRA
Sbjct: 440 LSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRA 499

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDEL+KEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV K
Sbjct: 500 LDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAK 559

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLIS IFGR+IVIRDVQRFHRFEDGKCSCGDF
Sbjct: 560 NLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDF 603

[Close]
BLAST of Lsi04G004220 vs. NCBI nr
Match: XP_008446357.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucumis melo] >KAA0034422.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17712.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1035.4 bits (2676), Expect = 1.7e-298
Identity = 494/524 (94.27%), Postives = 515/524 (98.28%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFDQI DKDI+LFNIM RGYARSNSPYLAFSLFAQ+LCSGLLPDDYTFSSLLKA
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFAQLLCSGLLPDDYTFSSLLKA 139

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CASSKAL++GM LHCFA+KLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY
Sbjct: 140 CASSKALRQGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQAS++EPTDVTMLSVIMSCALLGALDLG+WIHEYVKK
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASDIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDKYVKVNTALIDMFAKCGSL DAISIFEGMRVRDTQAWSAM+VAFATHG+GLK+IS+
Sbjct: 260 KGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKSISI 319

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMS+ YGITPGIKHYGCMVDLLG
Sbjct: 320 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSRTYGITPGIKHYGCMVDLLG 379

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAYNF+DELEIKPTPILWRTLLSACSTHGNV+MAKRVIERIFELDDSHGGDYVI
Sbjct: 380 RTGCLDEAYNFVDELEIKPTPILWRTLLSACSTHGNVEMAKRVIERIFELDDSHGGDYVI 439

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL ARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHC+SVELRRA
Sbjct: 440 LSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRA 499

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDEL+KEIKLVGY+PDTSLVYHADM+EEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV K
Sbjct: 500 LDELMKEIKLVGYIPDTSLVYHADMDEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAK 559

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLIS IFGR+IVIRDVQRFH+FEDGKCSCGDF
Sbjct: 560 NLRICGDCHNAAKLISFIFGRKIVIRDVQRFHQFEDGKCSCGDF 603

[Close]
BLAST of Lsi04G004220 vs. NCBI nr
Match: KAG6574081.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1015.4 bits (2624), Expect = 1.9e-292
Identity = 487/525 (92.76%), Postives = 505/525 (96.19%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFD++ DKDIVLFNIM RGYARSNSPYL FSLFAQVLCSGLLPDDYTFSSLLKA
Sbjct: 74  MDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKA 133

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA SKAL+EG +LHCFAIKLGL HNIYICPTLINMYA CNDMNAARGVFD ME+PCIVSY
Sbjct: 134 CAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSY 193

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSCALLGALDLGRWIHEYVKK
Sbjct: 194 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKK 253

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDK+VKVNTALIDM+AKCGS+ DAISIFEGMRVRDTQAWSAM+VAFATHG+GLKAISM
Sbjct: 254 KGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISM 313

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMK+AGVRPDEITFLGLLYACSHAGLV++GRGYFYSM KN+GITPGIKHYGCMVDLLG
Sbjct: 314 FEEMKKAGVRPDEITFLGLLYACSHAGLVDEGRGYFYSMYKNHGITPGIKHYGCMVDLLG 373

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAY FIDEL IKPTPILWRTLLSACS HGNVD+AKRVIERIFELDDSHGGDYVI
Sbjct: 374 RTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVI 433

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNLCAR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVH ISVELRRA
Sbjct: 434 LSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRA 493

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDELIKEIKL GY PDTSLVYHADMEEE KELVLRYHSEKLAMAFGLLNTPPGTTIRVVK
Sbjct: 494 LDELIKEIKLAGYAPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 553

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDFC 526
           NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSC DFC
Sbjct: 554 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDFC 598

[Close]
BLAST of Lsi04G004220 vs. NCBI nr
Match: XP_023541252.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1014.6 bits (2622), Expect = 3.2e-292
Identity = 488/524 (93.13%), Postives = 505/524 (96.37%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           MDHAHHLFD++ DKDIVLFNIM RGYARSNSPYL FSLFAQVLCSGLLPDDYTFSSLLKA
Sbjct: 74  MDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKA 133

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA SKAL+EG +LHCFAIKLGL HNIYICPTLINMYA CNDMNAARGVFD ME+PCIVSY
Sbjct: 134 CAGSKALEEGRQLHCFAIKLGLGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSY 193

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLS+IMSCALLGALDLGRWIHEYVKK
Sbjct: 194 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKK 253

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
           KGFDK+VKVNTALIDM+AKCGS+ DAISIFEGMRVRDTQAWSAM+VAFATHG+GLKAISM
Sbjct: 254 KGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISM 313

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMK+AGVRPDEITFLGLLYACSHAGLVE+GRGYFYSM KN+GITPGIKHYGCMVDLLG
Sbjct: 314 FEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGITPGIKHYGCMVDLLG 373

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           RTG LDEAY FIDEL IKPTPILWRTLLSACS HGNVD+AKRVIERIFELDDSHGGDYVI
Sbjct: 374 RTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVI 433

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNLCAR+GRWEDVN LRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVH ISVELRRA
Sbjct: 434 LSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRA 493

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDELIKEIKL GYVPDTSLVYHADMEEE KELVLRYHSEKLAMAFGLLNTPPGTTIRVVK
Sbjct: 494 LDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 553

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDG+CSC DF
Sbjct: 554 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597

[Close]
BLAST of Lsi04G004220 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 777.7 bits (2007), Expect = 6.1e-225
Identity = 359/524 (68.51%), Postives = 436/524 (83.21%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           M +A HLF+ + + DIV+FN M RGY+R  +P   FSLF ++L  G+LPD+YTF SLLKA
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKA 138

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA +KAL+EG +LHC ++KLGL+ N+Y+CPTLINMY EC D+++AR VFD + +PC+V Y
Sbjct: 139 CAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY 198

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NA+ITGYAR ++PNEALSLFRE+Q   L+P ++T+LSV+ SCALLG+LDLG+WIH+Y KK
Sbjct: 199 NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKK 258

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
             F KYVKVNTALIDMFAKCGSL DA+SIFE MR +DTQAWSAM+VA+A HG   K++ M
Sbjct: 259 HSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FE M+   V+PDEITFLGLL ACSH G VE+GR YF  M   +GI P IKHYG MVDLL 
Sbjct: 319 FERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLS 378

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G+L++AY FID+L I PTP+LWR LL+ACS+H N+D+A++V ERIFELDDSHGGDYVI
Sbjct: 379 RAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVI 438

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           LSNL AR  +WE V+ LRK+MKDR  VKVPGCSS+EVNNVVHEFFSGDGV   + +L RA
Sbjct: 439 LSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRA 498

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           LDE++KE+KL GYVPDTS+V HA+M ++ KE+ LRYHSEKLA+ FGLLNTPPGTTIRVVK
Sbjct: 499 LDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVK 558

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLR+C DCHNAAKLISLIFGR++V+RDVQRFH FEDGKCSCGDF
Sbjct: 559 NLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDF 602

[Close]
BLAST of Lsi04G004220 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 493.0 bits (1268), Expect = 3.0e-139
Identity = 227/526 (43.16%), Postives = 348/526 (66.16%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           +++A  LFD+IP KD+V +N M  GYA + +   A  LF  ++ + + PD+ T  +++ A
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA S +++ G ++H +    G   N+ I   LI++Y++C ++  A G+F+ +    ++S+
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           N +I GY   +   EAL LF+E+  S   P DVTMLS++ +CA LGA+D+GRWIH Y+ K
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395

Query: 181 --KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAI 240
             KG      + T+LIDM+AKCG +  A  +F  +  +   +W+AM+  FA HG    + 
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 455

Query: 241 SMFEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDL 300
            +F  M++ G++PD+ITF+GLL ACSH+G+++ GR  F +M+++Y +TP ++HYGCM+DL
Sbjct: 456 DLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515

Query: 301 LGRTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDY 360
           LG +G   EA   I+ +E++P  ++W +LL AC  HGNV++ +   E + +++  + G Y
Sbjct: 516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSY 575

Query: 361 VILSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELR 420
           V+LSN+ A  GRW +V   R L+ D+G+ KVPGCSS+E+++VVHEF  GD  H  + E+ 
Sbjct: 576 VLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 635

Query: 421 RALDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRV 480
             L+E+   ++  G+VPDTS V   +MEEE KE  LR+HSEKLA+AFGL++T PGT + +
Sbjct: 636 GMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 695

Query: 481 VKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           VKNLR+C +CH A KLIS I+ R+I+ RD  RFH F DG CSC D+
Sbjct: 696 VKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740

[Close]
BLAST of Lsi04G004220 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 472.6 bits (1215), Expect = 4.2e-133
Identity = 226/524 (43.13%), Postives = 340/524 (64.89%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           ++ A  LFD + ++++V +N M   Y ++ +P  A  +F ++L  G+ P D +    L A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           CA    L+ G  +H  +++LGL+ N+ +  +LI+MY +C +++ A  +F +++   +VS+
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           NA+I G+A++ +P +AL+ F ++++  ++P   T +SVI + A L      +WIH  V +
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
              DK V V TAL+DM+AKCG++  A  IF+ M  R    W+AM+  + THG G  A+ +
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEM++  ++P+ +TFL ++ ACSH+GLVE G   FY M +NY I   + HYG MVDLLG
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLG 586

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G L+EA++FI ++ +KP   ++  +L AC  H NV+ A++  ER+FEL+   GG +V+
Sbjct: 587 RAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVL 646

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           L+N+      WE V  +R  M  +G+ K PGCS VE+ N VH FFSG   H  S ++   
Sbjct: 647 LANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAF 706

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           L++LI  IK  GYVPDT+LV    +E + KE +L  HSEKLA++FGLLNT  GTTI V K
Sbjct: 707 LEKLICHIKEAGYVPDTNLV--LGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRK 766

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           NLR+C DCHNA K ISL+ GR+IV+RD+QRFH F++G CSCGD+
Sbjct: 767 NLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDY 808

[Close]
BLAST of Lsi04G004220 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 464.9 bits (1195), Expect = 8.7e-131
Identity = 220/524 (41.98%), Postives = 345/524 (65.84%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           +D    +F+ +P KD+V +N +  GYA+S     A  +  ++  + L PD +T SS+L  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
            +    + +G E+H + I+ G++ ++YI  +L++MYA+   +  +  VF  +     +S+
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 121 NAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSVIMSCALLGALDLGRWIHEYVKK 180
           N+++ GY ++ + NEAL LFR++  + ++P  V   SVI +CA L  L LG+ +H YV +
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 181 KGFDKYVKVNTALIDMFAKCGSLADAISIFEGMRVRDTQAWSAMMVAFATHGNGLKAISM 240
            GF   + + +AL+DM++KCG++  A  IF+ M V D  +W+A+++  A HG+G +A+S+
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 241 FEEMKRAGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKNYGITPGIKHYGCMVDLLG 300
           FEEMKR GV+P+++ F+ +L ACSH GLV++  GYF SM+K YG+   ++HY  + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 301 RTGHLDEAYNFIDELEIKPTPILWRTLLSACSTHGNVDMAKRVIERIFELDDSHGGDYVI 360
           R G L+EAYNFI ++ ++PT  +W TLLS+CS H N+++A++V E+IF +D  + G YV+
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551

Query: 361 LSNLCARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCISVELRRA 420
           + N+ A  GRW+++  LR  M+ +G+ K P CS +E+ N  H F SGD  H    ++   
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611

Query: 421 LDELIKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVVK 480
           L  ++++++  GYV DTS V H D++EE K  +L  HSE+LA+AFG++NT PGTTIRV K
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLH-DVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTK 671

Query: 481 NLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGKCSCGDF 525
           N+RIC DCH A K IS I  R+I++RD  RFH F  G CSCGD+
Sbjct: 672 NIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDY 714

[Close]
BLAST of Lsi04G004220 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 464.5 bits (1194), Expect = 1.1e-130
Identity = 218/555 (39.28%), Postives = 341/555 (61.44%), Query Frame = 0 

Query: 1   MDHAHHLFDQIPDKDIVLFNIMTRGYARSNSPYLAFSLFAQVLCSGLLPDDYTFSSLLKA 60
           + +A  +FD     D  L+N+M RG++ S+ P  +  L+ ++LCS    + YTF SLLKA
Sbjct: 65  LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124

Query: 61  CASSKALKEGMELHCFAIKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 120
           C++  A +E  ++H    KLG  +++Y   +LIN YA   +   A  +FD + +P  VS+
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184

Query: 121 NAIITGYARSSQPN-------------------------------EALSLFRELQASNLE 180
           N++I GY ++ + +                               EAL LF E+Q S++E
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244

Query: 181 PTDVTMLSVIMSCALLGALDLGRWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLADAISI 240
           P +V++ + + +CA LGAL+ G+WIH Y+ K        +   LIDM+AKCG + +A+ +
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEV 304

Query: 241 FEGMRVRDTQAWSAMMVAFATHGNGLKAISMFEEMKRAGVRPDEITFLGLLYACSHAGLV 300
           F+ ++ +  QAW+A++  +A HG+G +AIS F EM++ G++P+ ITF  +L ACS+ GLV
Sbjct: 305 FKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLV 364

Query: 301 EQGRGYFYSMSKNYGITPGIKHYGCMVDLLGRTGHLDEAYNFIDELEIKPTPILWRTLLS 360
           E+G+  FYSM ++Y + P I+HYGC+VDLLGR G LDEA  FI E+ +KP  ++W  LL 
Sbjct: 365 EEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLK 424

Query: 361 ACSTHGNVDMAKRVIERIFELDDSHGGDYVILSNLCARVGRWEDVNHLRKLMKDRGVVKV 420
           AC  H N+++ + + E +  +D  HGG YV  +N+ A   +W+     R+LMK++GV KV
Sbjct: 425 ACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKV 484

Query: 421 PGCSSVEVNNVVHEFFSGDGVHCISVELRRALDELIKEIKLVGYVPDTSLVYHADMEEEG 480
           PGCS++ +    HEF +GD  H    +++     + ++++  GYVP+   +    ++++ 
Sbjct: 485 PGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDE 544

Query: 481 KELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQ 525
           +E ++  HSEKLA+ +GL+ T PGT IR++KNLR+C DCH   KLIS I+ R IV+RD  
Sbjct: 545 REAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRT 604

The following BLAST results are available for this feature:
BLAST of Lsi04G004220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LK938.5e-22468.51Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop... [more]
Q9LN014.2e-13843.16Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q3E6Q15.9e-13243.13Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
Q9LIQ71.4e-13042.10Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
Q9LW631.2e-12941.98Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th... [more]
BLAST of Lsi04G004220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU152.2e-29994.66DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6051... [more]
A0A5A7STH88.4e-29994.27Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BFK08.4e-29994.27pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucumis ... [more]
A0A6J1DA687.6e-29292.94pentatricopeptide repeat-containing protein At2g02980, chloroplastic isoform X1 ... [more]
A0A6J1HTT76.4e-29192.37pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Cucurbit... [more]
BLAST of Lsi04G004220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893049.14.1e-30095.80pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Benincasa ... [more]
XP_031742214.14.6e-29994.66pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucumis sa... [more]
XP_008446357.11.7e-29894.27PREDICTED: pentatricopeptide repeat-containing protein At2g02980, chloroplastic ... [more]
KAG6574081.11.9e-29292.76Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_023541252.13.2e-29293.13pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Cucurbita ... [more]
BLAST of Lsi04G004220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G02980.16.1e-22568.51Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G08070.13.0e-13943.16Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G11290.14.2e-13343.13Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G23330.18.7e-13141.98Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G66520.11.1e-13039.28Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 282..427
e-value: 5.1E-15
score: 57.7
coord: 168..281
e-value: 7.1E-24
score: 86.8
coord: 1..74
e-value: 3.3E-11
score: 45.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 75..167
e-value: 4.7E-21
score: 76.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 71..216
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 118..151
e-value: 1.6E-7
score: 29.1
coord: 220..253
e-value: 2.1E-6
score: 25.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 115..162
e-value: 3.3E-10
score: 40.0
coord: 217..263
e-value: 3.5E-9
score: 36.7
coord: 14..62
e-value: 1.4E-8
score: 34.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 292..316
e-value: 0.25
score: 11.7
coord: 358..386
e-value: 0.79
score: 10.1
coord: 191..216
e-value: 0.024
score: 14.8
coord: 323..347
e-value: 0.12
score: 12.7
coord: 91..113
e-value: 0.043
score: 14.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 217..251
score: 11.377887
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 11.619036
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 15..49
score: 9.361008
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 390..515
e-value: 1.3E-37
score: 128.5
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 10..512
NoneNo IPR availablePANTHERPTHR47926:SF132BNAA02G26650D PROTEINcoord: 10..512

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004220.1Lsi04G004220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1900865 chloroplast RNA modification
biological_process GO:0031425 chloroplast RNA processing
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding