Lcy03g001050 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g001050
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 3500338 .. 3503718 (-)
RNA-Seq ExpressionLcy03g001050
SyntenyLcy03g001050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGGCCTCATGCCAAGGCCGAGGCCGGCCACCCCAACTTAGAGGTTAAATTTTGTTCTCAAAAGACCAGGGAAAATGCAAGATACATAGTAGGAAAATAGGAAACAAGATTCATGAAAGTAGAGCCAGAAAAAACAAGAGGGGATATGCATTCCCTATCAAACAAAAGGCAAGAGGGGATATGCTTCCCTATCAAACAAAAGGCAAGAGGGGATATGCACTCTCTATTGAACAAAAGGCAACTGGTTCAAGCATTACCTTCAGGTCAAAATGAGCCGCCACATCTTGCGAGCCTAGGCCCTCGGGTCTACCTCGCCTCATCTAGCTTTGAGATCATGTGAGCCTGGACCACCGAGTCTACCTCACCTCATCTGGCTTAAGCCTGTCACGCGCACCGGGACTACCAAGCTTACCTCGCCTCATCCGGGTTTGGGATTGCATGAGCCTGGACTACCTAGTCTACCTCACTTCAGAGCCCAAACACTTCACCTGAGTCAAGCTCACCTAGCTGAGGCCGAGGCTGAGCACCTCTTGCCGAGGCCGAGCACAAGCACAAGCTTGAAAGGTATTCTCCTCTTTGCTTAACTATGTTGTATGTTTTAAATAGAACTTTACATCGGTAAGGGGGCTACAAAGGGGATATGCACTCCCTATTAAACAAAAACAAGTAACAGGGGATATGCACTCCCAATTAAACAAAAGGTACTCTAGCTTGGCATGTCTAAATCGATGATTACATGTTCTAGCATATTCTTTCATTGTTTTCCTACAAGGACTAACGTATGAATATAGGGAGCTAAATTTTGAGCTAACAGGGGTCCGAGGCCGAGGCCGACCCTAGCCTCTTCCCTCATGCTTCTTTTGCAGAAGTTAACCTTTCGATGCAGGATTATGGAATCTCCTGCTTCTCCTATTTTTTACTTGTGGATAAGCCTTGGATCTGGAATAAAGCGTTCCGAATGACCAAGAGCGGGGGTCTCGCTGCTGTGCTCGGCCTCGGGCCGAGGCCGACCAGATAAGCTAAAATGGGAAATTGCAGTGCTCGACCTCTTCCTGAGGCCAAGGCCGACCAGAGAGGCCCTCCAGCCATTTTTTGTAATTTCTCACTTTTTTCATTTCCATTTCACCTGACCCCTATTCAGGGAGTTTCTACTTTGTCTATTTTTATCTTATCTTGCAGGATGACAATAAAGCTACACATAGGTCAGCACAAGGCAAGGGTCATTACTCTTAAATCGGGCTTAAGGAGCTTGGCCTATAACAGTAAGTCGCACCTGAATCCCAATTCAAGAGTGGGGGCTTAATGTTGTAAGTAATTTTGGACCACTCCGAAGCACTAGGAGTTGACGAAGACAACCGGGCAGAGATAGGGCCAGGAAACCGACCCAGAGGAAGACCAGACCAAAGGGTCGGGCCAATATGGTCGGCCTCTTGCCAAGGCCGAGGCCGACCATTCGGCCCGCTTGCGCGGGTCGAGCTCTTCTGCCTCCGTTCGGTCCCTGCAGCCCCTGGACGCCCCGGTTCCACCTGGTTCAGCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGACATTTAAACCCCTCTTCATCACTGAAGAAAGGATCCGGAAACTCTACTCTCGACTTCTCTCCTTACTTTCTAGCTTCTCCTCGGCTTTCTGACTTAAGCATCGGAGGCGGTGTGGCCTACACCACACCAGTGTGCAGCGATTTTTATTGGTTTTGCAGGTCACGTCTTCCACTTCAAATAAATTCACTATTTGTGTCACGTGAAGGTCAGGTGAGTCGCTTGGCCAAATTTTGCCATCAACAACTTAGTTTCCCTATTTCAAAAAAAAAAAAAAAAAAAATTTCTCTGATTTTCCAAATTCTTTTTTATTTTAATACAATTAAAATCTAATTAACCCCTGTATTTTGCCATAACATTTATTAACAAAAAGAAAATGTAAGATCTAATTTTACAATTTCCATTTCATTGAAAAAGACAACTCTTCTTGTTAGAAAAATCCATACGTCCTATTTTGGCAAACATGCAGGGAGAAAAGGTCAGAAATCCCTATTATATGGTAATTATGAAGTAATATAAACATTATTTGCTTTATTTAATTTTCCAGATGAAAGTTACCATGTTCATGCAATTTATCATATTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTGATAAATATTTCTTTTCATTTAAACAGCTCTCCAAACTAGTATATATATATATGAGTATCAACTTCATAATCTGAACCACAGAAAAGATAATAGCAAATAATATTTATCGTAAAAAAGCTTTAGTAAGATCGATCATGGAGAAAAAGTTCATTTCCCTTCCTCTCTTATCTTTTCTTCTACTCTGCCTTGTAACCATTTCTCACTCCGAAGGTATAAGCCCTTCTCTTATCTTGTAAATATTATGTTTCAATTATTTAGGTCCCGTTTGATATCCATTTGGTTTTTTGGTTTTTTGTTTTTGAAAATTAAGCTTATAAATCATACTTCCACTTCAAGTTTCTATGTTTTGCTAATACTTTTCTTTCCTTGTTTTAAAAAACCATGTAAATTTTGAAAACTAAAAAAAGTAGGTCCCATTTGATAACCATTTGATTTTTGGTTTTTGGTGTTTGAAAATTAAGCTTAGACACACCTATTCCTACCTATGAGTTTCTTTGTTTTAGTATCTACCTCCTTCCTTGTTTTCAAAAACCAAGTCAAATTTTGAAAATAAAAAAAAGAGTAGTTTCCAAAAACTTGTTTTTGTTTTTCAAATTTGACAAGTAATTCAAATGGTTCCTTAACAAAGATGAAAACTATTGTAGGAAATTTGGGAGAAAGCAAGCATAATTTTCAAAAACCAAAAACAAAAAACCAAATGGTTATCAAACGAGGCCGTAGTTTTCAAAAACTTGTTTTTGTTTTTAGAATTTTGCTAGGAACTCAAATGTGTCATTGGCAAATATGAAAACCATGGTAGGAAAATTGGAAGAAAACAAGGCAAATTTTCAAAAACCAAAAACATAAAACCAAATGGTTATCAAACGAGCCCTTAATTTTTTTTTAAATCATTTTAGTCGTTGTCGTTAATGTTTCGAATTTGGTTTTCGGAATTGTTGCAGATCAATCAAAGACTTGTCCAGTACAATTTGGTTCCACAGGGACATGTGCAGGGTCTTTTGGAATCTCAGAATGCTACCATGAAGCAATGGCTAGGTTTAGAAATATCCCACCCAAGGGTTGCCAATGCATTCCCAATGGTTTTAACTCTCGCATTTGTCGCTGCAATGTTGTTTGTCTCTAAAGTACCCAATGCTGCAAAGAAAGTGTTCTTGCTACACAGGATGAGATCATTTTAG

mRNA sequence

ATGGCTCGGCCTCATGCCAAGGCCGAGGCCGGCCACCCCAACTTAGAGATCAATCAAAGACTTGTCCAGTACAATTTGGTTCCACAGGGACATGTGCAGGGTCTTTTGGAATCTCAGAATGCTACCATGAAGCAATGGCTAGGTTTAGAAATATCCCACCCAAGGGTTGCCAATGCATTCCCAATGGTTTTAACTCTCGCATTTGTCGCTGCAATGTTGTTTGTCTCTAAAGTACCCAATGCTGCAAAGAAAGTGTTCTTGCTACACAGGATGAGATCATTTTAG

Coding sequence (CDS)

ATGGCTCGGCCTCATGCCAAGGCCGAGGCCGGCCACCCCAACTTAGAGATCAATCAAAGACTTGTCCAGTACAATTTGGTTCCACAGGGACATGTGCAGGGTCTTTTGGAATCTCAGAATGCTACCATGAAGCAATGGCTAGGTTTAGAAATATCCCACCCAAGGGTTGCCAATGCATTCCCAATGGTTTTAACTCTCGCATTTGTCGCTGCAATGTTGTTTGTCTCTAAAGTACCCAATGCTGCAAAGAAAGTGTTCTTGCTACACAGGATGAGATCATTTTAG

Protein sequence

MARPHAKAEAGHPNLEINQRLVQYNLVPQGHVQGLLESQNATMKQWLGLEISHPRVANAFPMVLTLAFVAAMLFVSKVPNAAKKVFLLHRMRSF
Homology
[Close]
BLAST of Lcy03g001050 vs. NCBI nr
Match: KAG6607503.1 (hypothetical protein SDJN03_00845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 43/75 (57.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 15 LEINQRLVQYNLVPQGHVQGLLESQNATMKQWLGLEISHPRVANAFPMVLTLAFVAAMLF 74
          L+INQRL   N V Q HV+  LESQNAT+ QW  +EISH R ANAF MV TLAF  AML 
Sbjct: 14 LQINQRLAHKNFVQQEHVEAGLESQNATVNQWQEMEISHQRAANAFLMVWTLAFAVAMLP 73

Query: 75 VSKVPNAAKKVFLLH 90
          V K P    ++  LH
Sbjct: 74 VPKSPMLPPQILFLH 88

The following BLAST results are available for this feature:
BLAST of Lcy03g001050 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g001050 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g001050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607503.11.9e-1157.33hypothetical protein SDJN03_00845, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy03g001050 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g001050.1Lcy03g001050.1mRNA