Lcy03g000780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	terpene synthase 10-like
Location	Chr03: 2365419 .. 2365619 (+)
RNA-Seq Expression	Lcy03g000780
Synteny	Lcy03g000780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATTGGATGGGTGAATTTTGTTCAGGATGAACTAAAAAGAGGCGATATTCCAAAATCAATTCAATGTTACATGAATGATTTTGGAACGTCAGAGAATGGTGCTCGTGAACATATTACATATTTGATCGATAAGATATGGAAGGAGTTAAATAAAGTTGAAGTTGGAAACTCCATCCTCCCTCTAGCATTTGTCTAG

mRNA sequence

ATGTTTATTGGATGGGTGAATTTTGTTCAGGATGAACTAAAAAGAGGCGATATTCCAAAATCAATTCAATGTTACATGAATGATTTTGGAACGTCAGAGAATGGTGCTCGTGAACATATTACATATTTGATCGATAAGATATGGAAGGAGTTAAATAAAGTTGAAGTTGGAAACTCCATCCTCCCTCTAGCATTTGTCTAG

Coding sequence (CDS)

ATGTTTATTGGATGGGTGAATTTTGTTCAGGATGAACTAAAAAGAGGCGATATTCCAAAATCAATTCAATGTTACATGAATGATTTTGGAACGTCAGAGAATGGTGCTCGTGAACATATTACATATTTGATCGATAAGATATGGAAGGAGTTAAATAAAGTTGAAGTTGGAAACTCCATCCTCCCTCTAGCATTTGTCTAG

Protein sequence

MFIGWVNFVQDELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV

Homology

[Close]

BLAST of Lcy03g000780 vs. ExPASy Swiss-Prot
Match: A7IZZ2 ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa OX=3483 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.9e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 9   VQDELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           + DE+KRGD+PKSIQCYM+D G SE+ AREHI +LI +IWKE+N  +  NSI    FV
Sbjct: 517 LSDEMKRGDVPKSIQCYMHDTGASEDEAREHIKFLISEIWKEMNDEDEYNSIFSKEFV 574

[Close]

BLAST of Lcy03g000780 vs. ExPASy Swiss-Prot
Match: A7IZZ1 ((-)-limonene synthase, chloroplastic OS=Cannabis sativa OX=3483 GN=TPS1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-13
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 9   VQDELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGN 59
           + DELKRGD+PKSIQCYM+D G SE+ AREHI YLI + WKE+N  E GN
Sbjct: 523 LSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKEMNN-EDGN 571

[Close]

BLAST of Lcy03g000780 vs. ExPASy Swiss-Prot
Match: Q93X23 (Myrcene synthase, chloroplastic OS=Quercus ilex OX=58334 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-13
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DELKRGD+PK+IQCYMN+ G SE GARE+I YLI   WK++NK    +S     F+
Sbjct: 498 DELKRGDVPKAIQCYMNETGASEEGAREYIKYLISATWKKMNKDRAASSPFSHIFI 553

[Close]

BLAST of Lcy03g000780 vs. ExPASy Swiss-Prot
Match: B6SCF4 (Myrcene synthase, chloroplastic OS=Humulus lupulus OX=3486 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-13
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DEL RGD+PKSIQCYM D G SE+ AREHI +LI + WK++NK +  NS     FV
Sbjct: 513 DELNRGDVPKSIQCYMYDTGASEDEAREHIKFLICETWKDMNKNDEDNSCFSETFV 568

[Close]

BLAST of Lcy03g000780 vs. ExPASy Swiss-Prot
Match: Q6PWU2 ((-)-alpha-terpineol synthase OS=Vitis vinifera OX=29760 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.3e-12
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DELKRGD+PKSIQCYM + G SE  AR+H +YLI + WK+LN+     S  P  F+
Sbjct: 490 DELKRGDVPKSIQCYMYETGASEEDARKHTSYLIGETWKKLNEDGAVESPFPETFI 545

[Close]

BLAST of Lcy03g000780 vs. ExPASy TrEMBL
Match: A0A6J1EJW9 (terpene synthase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111434993 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DE+KRGDIPKS+QCYMND G SE+ AREH+ +LID+ WK+LNK++V NS+ P  F+
Sbjct: 488 DEIKRGDIPKSVQCYMNDTGASESKAREHVRHLIDETWKKLNKIDVENSVFPPVFI 543

[Close]

BLAST of Lcy03g000780 vs. ExPASy TrEMBL
Match: A0A5A7TRP8 (Terpene synthase 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00950 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DEL RGD+PKSIQCYMND G+SE+ AR+HI +LID+ WK+LNKV+V NSI P  F+
Sbjct: 249 DELARGDVPKSIQCYMNDTGSSESDARKHIRHLIDETWKKLNKVQVQNSIFPQVFI 304

[Close]

BLAST of Lcy03g000780 vs. ExPASy TrEMBL
Match: A0A1S3CDB3 (terpene synthase 10-like OS=Cucumis melo OX=3656 GN=LOC103499733 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.2e-15
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DEL RGD+PKSIQCYMND G+SE+ AR+HI +LID+ WK+LNKV+V NSI P  F+
Sbjct: 491 DELARGDVPKSIQCYMNDTGSSESDARKHIRHLIDETWKKLNKVQVQNSIFPQVFI 546

[Close]

BLAST of Lcy03g000780 vs. ExPASy TrEMBL
Match: A0A6J1EMY1 (terpene synthase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111434992 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DEL+RGDIPKSIQCYMND G SE+ AREH+  LID+ WK+LNK EV NSI P  F+
Sbjct: 488 DELERGDIPKSIQCYMNDTGASESKAREHVRRLIDETWKKLNKAEVENSIFPQVFI 543

[Close]

BLAST of Lcy03g000780 vs. ExPASy TrEMBL
Match: A0A5D3BSM6 (Terpene synthase 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00980 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DELKRGD+PKSIQCYMND G SE+ AR++I +LID+ WK++NK+EV N I+P  FV
Sbjct: 273 DELKRGDVPKSIQCYMNDTGASESNARKYIKHLIDETWKKMNKIEVENPIIPRVFV 328

[Close]

BLAST of Lcy03g000780 vs. NCBI nr
Match: XP_038902516.1 (terpene synthase 10-like [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DELKRGD+PKSIQCYMND G SEN AREHI +LI + WK+LNKVEV NSI P  F+
Sbjct: 488 DELKRGDVPKSIQCYMNDTGASENKAREHIKHLIVEAWKKLNKVEVENSIFPQVFI 543

[Close]

BLAST of Lcy03g000780 vs. NCBI nr
Match: KAE8651968.1 (hypothetical protein Csa_006533 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DELKRGD+PKSIQCYMND G SE+ AR++I +LID+ WK++NK+EV NSI+P  FV
Sbjct: 425 DELKRGDVPKSIQCYMNDTGASESNARKYIKHLIDETWKKINKIEVENSIIPQVFV 480

[Close]

BLAST of Lcy03g000780 vs. NCBI nr
Match: XP_011650166.1 (terpene synthase 10 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DELKRGD+PKSIQCYMND G SE+ AR++I +LID+ WK++NK+EV NSI+P  FV
Sbjct: 464 DELKRGDVPKSIQCYMNDTGASESNARKYIKHLIDETWKKINKIEVENSIIPQVFV 519

[Close]

BLAST of Lcy03g000780 vs. NCBI nr
Match: XP_023513213.1 (terpene synthase 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 9.9e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DE+KRGDIPKS+QCYMND G SE+ AREH+ +LID+ WK+LNK++V NS+ P  F+
Sbjct: 488 DEIKRGDIPKSVQCYMNDTGASESKAREHVRHLIDETWKKLNKIDVENSVFPPVFI 543

[Close]

BLAST of Lcy03g000780 vs. NCBI nr
Match: XP_022928104.1 (terpene synthase 10-like [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 9.9e-15
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNSILPLAFV 67
           DE+KRGDIPKS+QCYMND G SE+ AREH+ +LID+ WK+LNK++V NS+ P  F+
Sbjct: 488 DEIKRGDIPKSVQCYMNDTGASESKAREHVRHLIDETWKKLNKIDVENSVFPPVFI 543

[Close]

BLAST of Lcy03g000780 vs. TAIR 10
Match: AT2G24210.1 (terpene synthase 10 )

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-10
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELNKVEVGNS 60
           DEL RGD+ KSIQCYM++ G SE+ AR H+  +I+ +W E+N  ++ +S
Sbjct: 491 DELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLWDEMNYEKMAHS 539

[Close]

BLAST of Lcy03g000780 vs. TAIR 10
Match: AT3G25810.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELN 53
           DEL RGD+ KS+QCYM++ G SE  AR H+  +I   W E+N
Sbjct: 496 DELARGDVLKSVQCYMHETGVSEEEARTHVQQMISHTWDEMN 537

[Close]

BLAST of Lcy03g000780 vs. TAIR 10
Match: AT3G25820.1 (terpene synthase-like sequence-1,8-cineole )

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-08
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 12  ELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELN 53
           EL RGD+ KS+QCYM++ G SE  AR+H+  +I  +W ++N
Sbjct: 495 ELARGDVLKSVQCYMHETGASEERARDHVHQMISDMWDDMN 535

[Close]

BLAST of Lcy03g000780 vs. TAIR 10
Match: AT3G25830.1 (terpene synthase-like sequence-1,8-cineole )

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-08
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 12  ELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELN 53
           EL RGD+ KS+QCYM++ G SE  AR+H+  +I  +W ++N
Sbjct: 495 ELARGDVLKSVQCYMHETGASEERARDHVHQMISDMWDDMN 535

[Close]

BLAST of Lcy03g000780 vs. TAIR 10
Match: AT4G16730.1 (terpene synthase 02 )

HSP 1 Score: 47.4 bits (111), Expect = 5.3e-06
Identity = 19/42 (45.24%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 11  DELKRGDIPKSIQCYMNDFGTSENGAREHITYLIDKIWKELN 53
           +E+ RGD PKS+QCYM +   SE  AR H+  +I   W  +N
Sbjct: 440 EEMARGDSPKSVQCYMYETRASEEEARRHMQSMISDSWDIIN 481

The following BLAST results are available for this feature:

BLAST of Lcy03g000780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7IZZ2	7.9e-15	60.34	(+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa OX=3483 PE=1 SV=1	[more]
A7IZZ1	1.9e-13	68.00	(-)-limonene synthase, chloroplastic OS=Cannabis sativa OX=3483 GN=TPS1 PE=1 SV=...	[more]
Q93X23	3.3e-13	57.14	Myrcene synthase, chloroplastic OS=Quercus ilex OX=58334 PE=1 SV=1	[more]
B6SCF4	7.4e-13	58.93	Myrcene synthase, chloroplastic OS=Humulus lupulus OX=3486 PE=1 SV=1	[more]
Q6PWU2	6.3e-12	55.36	(-)-alpha-terpineol synthase OS=Vitis vinifera OX=29760 PE=1 SV=1	[more]

BLAST of Lcy03g000780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJW9	4.8e-15	64.29	terpene synthase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111434993 PE=4 SV=1	[more]
A0A5A7TRP8	8.2e-15	67.86	Terpene synthase 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CDB3	8.2e-15	67.86	terpene synthase 10-like OS=Cucumis melo OX=3656 GN=LOC103499733 PE=4 SV=1	[more]
A0A6J1EMY1	1.1e-14	69.64	terpene synthase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111434992 PE=4 SV=1	[more]
A0A5D3BSM6	1.4e-14	66.07	Terpene synthase 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Lcy03g000780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902516.1	2.6e-15	73.21	terpene synthase 10-like [Benincasa hispida]	[more]
KAE8651968.1	7.6e-15	67.86	hypothetical protein Csa_006533 [Cucumis sativus]	[more]
XP_011650166.1	7.6e-15	67.86	terpene synthase 10 [Cucumis sativus]	[more]
XP_023513213.1	9.9e-15	64.29	terpene synthase 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928104.1	9.9e-15	64.29	terpene synthase 10-like [Cucurbita moschata]	[more]

BLAST of Lcy03g000780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24210.1	4.6e-10	48.98	terpene synthase 10	[more]
AT3G25810.1	1.1e-08	52.38	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT3G25820.1	4.3e-08	48.78	terpene synthase-like sequence-1,8-cineole	[more]
AT3G25830.1	4.3e-08	48.78	terpene synthase-like sequence-1,8-cineole	[more]
AT4G16730.1	5.3e-06	45.24	terpene synthase 02	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF19086	Terpene_syn_C_2	coord: 10..50 e-value: 1.3E-7 score: 31.6
None	No IPR available	PANTHER	PTHR31225:SF127	BETA MYRCENE/LIMONENE SYNTHASE	coord: 10..66
None	No IPR available	PANTHER	PTHR31225	OS04G0344100 PROTEIN-RELATED	coord: 10..66
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 6..66 e-value: 6.2E-13 score: 50.2
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 10..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000780.1	Lcy03g000780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016102	diterpenoid biosynthetic process
biological_process	GO:0032784	regulation of DNA-templated transcription, elongation
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0032044	DSIF complex
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0010333	terpene synthase activity