Lcy03g000180 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCAGCTTCTCCATTCTCACTAGAACCCTCAACAAATCTCAGTGGGTTTTTCAAATCAACGACCTCTTTGACCAAAATACCCTCATCGTTGCTTCACAGACCCCCATTTTCGTCTTCCAGCCGTCCGAATCCGTCCAGATCGCGTGGGTATTGACTCAACGGCGGCATCCTCGCGTGGAGAGGTCTAGATCGCATGGGTATTGACTCTTTTTCGAGATCACGTGGGTACAGATTCTTCATCGATTCATCGCTCGCCGCTCATCAACAAGAAATACTCACCGTCGGTTCGCTCCTTGCACCTTTCTCTTCATTCCAAACCGATCCAGATCTCGCTCCAGACAGATCGTCGTCGTTTGTTCGAGGAAGGAGACGTTCCAAATCTTCGTCGAACATCAAGCTCGGTTGCTTTGAGGAAGGAGACATCTGAAGCTCGTTCCAGATCTCCGTCGGACATCAAGCTCGGTTGCTGCAGTTGTGGCTCATGGGTTCGTTTAATAGTGGCGGCTTTAATAGTGGGTGGTGGCTAGTTGTTTGGTGATAGTGATGAAGAAGACGATGGTGGTGGAGAGAGAGAAAGAAAGAAATTTATTAAAAATAATAATATTTTTATTATTTTTATTTTAGAAAATGAAAAAAAAAAGTAAAATACTTTTTTGGTCCCTCATGTTTCGGGTTTGTTTCCAATAGGTCCCTAGGTTTCAAAATCAAACAATCAAGTCCCTACTATTTGGGAAATGTTTCTATTGAGTCCCTCCACCGTTAATTTTTTTAACGGTGCTGACGTGGCACGTTAAAAATATTAAAATATTAATTTTAAATTTTAAATAATTAAATAATAAAAAAAATCTTCCTCCCTCTCTTCTTTCTCACCCATCTTCGTCTCTCTCTTCTAGTAATTTTCTTCCCCTCTCTCTCCTCTTCTCTTTCTCTCTTCTCTTTCCCCCACCCTTCCCCTTCTCGCCAGCGTCCGACAATAGCCCCCGCCGCCCTCCACCTCGCTGATTAAATCGATCTCGGTTTTCAAGTTCAAGAAGGGCAAAGGATTGATCGAAGGAAGCAATTGCACTGTTTGTTTGAGTGAATTTCAAGAAAACGAGAGTTTGCGATTGTTGCCTAAATGTAGCCACGCCACGCTTTTCATCTCGCGTGCATTGATACTTGGCTGAAATCCAATTTGAGTTGCCCTCTTTGCCGCTGCAATATCTCTTCCACGAATTCTCCACCTCCGAAGACTCTGCCACCTTCCGTGACGGCGCTAGGTTACCGCCACAGCAGTGACGCCACCGTGGTCGTTGTCCAAGATTTATCCACAAACGTAAGTCAGGAAGCCGTCGTAGTCAAAATCATAAGCGATTCAACTAATCAAGGAAGTCTAAATCCAAATCCGCCGAGTTTCGTAACAGAGAGAAAAGAAGAATTTGTCCATTCGATTAGGTCAGTTTCAAAGGATCATCAATCCTCTCCATGTCCAGGCCGCAATCTCTCCGTTGCAGACATATTGAGCATCAACCACGAAGAAGACGAAGAAATTGAAGTCGTGGATTCATCAACGGCAGTCGGAATCGGTCCCTCAAACGACAGCGGCAAAGAAATAGAGAAATCCAGAAACAAAAACGGCTATTGA ATGGCTTCCAGCTTCTCCATTCTCACTAGAACCCTCAACAAATCTCAGTGGGTTTTTCAAATCAACGACCTCTTTGACCAAAATACCCTCATCGTTGCTTCACAGACCCCCATTTTCGTCTTCCAGCCGTCCGAATCCGTCCAGATCGCGTGGATCTCGCTCCAGACAGATCGTCGTCGTTTGTTCGAGGAAGGAGACGTTCCAAATCTTCGTCGAACATCAAGCTCGGTTGCTTTGAGGAAGGAGACATCTGAAGCTCGTTCCAGATCTCCGTCGGACATCAAGCTCGGTTGCTGCAGTTGTGGCTCATGGCCACGCCACGCTTTTCATCTCGCGTGCATTGATACTTGGCTGAAATCCAATTTGAGTTGCCCTCTTTGCCGCTGCAATATCTCTTCCACGAATTCTCCACCTCCGAAGACTCTGCCACCTTCCGTGACGGCGCTAGGTTACCGCCACAGCAGTGACGCCACCGTGGTCGTTGTCCAAGATTTATCCACAAACGTAAGTCAGGAAGCCGTCGTAGTCAAAATCATAAGCGATTCAACTAATCAAGGAAGTCTAAATCCAAATCCGCCGAGTTTCGTAACAGAGAGAAAAGAAGAATTTGTCCATTCGATTAGGTCAGTTTCAAAGGATCATCAATCCTCTCCATGTCCAGGCCGCAATCTCTCCGTTGCAGACATATTGAGCATCAACCACGAAGAAGACGAAGAAATTGAAGTCGTGGATTCATCAACGGCAGTCGGAATCGGTCCCTCAAACGACAGCGGCAAAGAAATAGAGAAATCCAGAAACAAAAACGGCTATTGA ATGGCTTCCAGCTTCTCCATTCTCACTAGAACCCTCAACAAATCTCAGTGGGTTTTTCAAATCAACGACCTCTTTGACCAAAATACCCTCATCGTTGCTTCACAGACCCCCATTTTCGTCTTCCAGCCGTCCGAATCCGTCCAGATCGCGTGGATCTCGCTCCAGACAGATCGTCGTCGTTTGTTCGAGGAAGGAGACGTTCCAAATCTTCGTCGAACATCAAGCTCGGTTGCTTTGAGGAAGGAGACATCTGAAGCTCGTTCCAGATCTCCGTCGGACATCAAGCTCGGTTGCTGCAGTTGTGGCTCATGGCCACGCCACGCTTTTCATCTCGCGTGCATTGATACTTGGCTGAAATCCAATTTGAGTTGCCCTCTTTGCCGCTGCAATATCTCTTCCACGAATTCTCCACCTCCGAAGACTCTGCCACCTTCCGTGACGGCGCTAGGTTACCGCCACAGCAGTGACGCCACCGTGGTCGTTGTCCAAGATTTATCCACAAACGTAAGTCAGGAAGCCGTCGTAGTCAAAATCATAAGCGATTCAACTAATCAAGGAAGTCTAAATCCAAATCCGCCGAGTTTCGTAACAGAGAGAAAAGAAGAATTTGTCCATTCGATTAGGTCAGTTTCAAAGGATCATCAATCCTCTCCATGTCCAGGCCGCAATCTCTCCGTTGCAGACATATTGAGCATCAACCACGAAGAAGACGAAGAAATTGAAGTCGTGGATTCATCAACGGCAGTCGGAATCGGTCCCTCAAACGACAGCGGCAAAGAAATAGAGAAATCCAGAAACAAAAACGGCTATTGA MASSFSILTRTLNKSQWVFQINDLFDQNTLIVASQTPIFVFQPSESVQIAWISLQTDRRRLFEEGDVPNLRRTSSSVALRKETSEARSRSPSDIKLGCCSCGSWPRHAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLSTNVSQEAVVVKIISDSTNQGSLNPNPPSFVTERKEEFVHSIRSVSKDHQSSPCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNGY Homology
BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 4.2e-06 Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 5.5e-06 Identity = 54/149 (36.24%), Postives = 70/149 (46.98%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 3.6e-05 Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 8.0e-05 Identity = 50/169 (29.59%), Postives = 75/169 (44.38%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04 Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1KJE3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494536 PE=3 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62 Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1HMW7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464384 PE=3 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 8.2e-61 Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1H2X8 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459995 PE=3 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55 Identity = 125/174 (71.84%), Postives = 138/174 (79.31%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1DSH1 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111022765 PE=3 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54 Identity = 125/176 (71.02%), Postives = 135/176 (76.70%), Query Frame = 0
BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1L482 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111498996 PE=3 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 9.7e-54 Identity = 119/172 (69.19%), Postives = 134/172 (77.91%), Query Frame = 0
BLAST of Lcy03g000180 vs. NCBI nr
Match: XP_023000254.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima]) HSP 1 Score: 250.0 bits (637), Expect = 2.4e-62 Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = 0
BLAST of Lcy03g000180 vs. NCBI nr
Match: XP_023513580.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 245.7 bits (626), Expect = 4.4e-61 Identity = 126/168 (75.00%), Postives = 139/168 (82.74%), Query Frame = 0
BLAST of Lcy03g000180 vs. NCBI nr
Match: KAG6593770.1 (RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60 Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0
BLAST of Lcy03g000180 vs. NCBI nr
Match: XP_022964349.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata]) HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60 Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0
BLAST of Lcy03g000180 vs. NCBI nr
Match: KAG7026103.1 (RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60 Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0
BLAST of Lcy03g000180 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein ) HSP 1 Score: 53.1 bits (126), Expect = 3.9e-07 Identity = 54/149 (36.24%), Postives = 70/149 (46.98%), Query Frame = 0
BLAST of Lcy03g000180 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 50.4 bits (119), Expect = 2.5e-06 Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0
BLAST of Lcy03g000180 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein ) HSP 1 Score: 49.3 bits (116), Expect = 5.7e-06 Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 0
BLAST of Lcy03g000180 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein ) HSP 1 Score: 49.3 bits (116), Expect = 5.7e-06 Identity = 50/169 (29.59%), Postives = 75/169 (44.38%), Query Frame = 0
BLAST of Lcy03g000180 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein ) HSP 1 Score: 48.1 bits (113), Expect = 1.3e-05 Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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