Lcy03g000180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr03: 607791 .. 609420 (-)
RNA-Seq Expression	Lcy03g000180
Synteny	Lcy03g000180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAGCTTCTCCATTCTCACTAGAACCCTCAACAAATCTCAGTGGGTTTTTCAAATCAACGACCTCTTTGACCAAAATACCCTCATCGTTGCTTCACAGACCCCCATTTTCGTCTTCCAGCCGTCCGAATCCGTCCAGATCGCGTGGGTATTGACTCAACGGCGGCATCCTCGCGTGGAGAGGTCTAGATCGCATGGGTATTGACTCTTTTTCGAGATCACGTGGGTACAGATTCTTCATCGATTCATCGCTCGCCGCTCATCAACAAGAAATACTCACCGTCGGTTCGCTCCTTGCACCTTTCTCTTCATTCCAAACCGATCCAGATCTCGCTCCAGACAGATCGTCGTCGTTTGTTCGAGGAAGGAGACGTTCCAAATCTTCGTCGAACATCAAGCTCGGTTGCTTTGAGGAAGGAGACATCTGAAGCTCGTTCCAGATCTCCGTCGGACATCAAGCTCGGTTGCTGCAGTTGTGGCTCATGGGTTCGTTTAATAGTGGCGGCTTTAATAGTGGGTGGTGGCTAGTTGTTTGGTGATAGTGATGAAGAAGACGATGGTGGTGGAGAGAGAGAAAGAAAGAAATTTATTAAAAATAATAATATTTTTATTATTTTTATTTTAGAAAATGAAAAAAAAAAGTAAAATACTTTTTTGGTCCCTCATGTTTCGGGTTTGTTTCCAATAGGTCCCTAGGTTTCAAAATCAAACAATCAAGTCCCTACTATTTGGGAAATGTTTCTATTGAGTCCCTCCACCGTTAATTTTTTTAACGGTGCTGACGTGGCACGTTAAAAATATTAAAATATTAATTTTAAATTTTAAATAATTAAATAATAAAAAAAATCTTCCTCCCTCTCTTCTTTCTCACCCATCTTCGTCTCTCTCTTCTAGTAATTTTCTTCCCCTCTCTCTCCTCTTCTCTTTCTCTCTTCTCTTTCCCCCACCCTTCCCCTTCTCGCCAGCGTCCGACAATAGCCCCCGCCGCCCTCCACCTCGCTGATTAAATCGATCTCGGTTTTCAAGTTCAAGAAGGGCAAAGGATTGATCGAAGGAAGCAATTGCACTGTTTGTTTGAGTGAATTTCAAGAAAACGAGAGTTTGCGATTGTTGCCTAAATGTAGCCACGCCACGCTTTTCATCTCGCGTGCATTGATACTTGGCTGAAATCCAATTTGAGTTGCCCTCTTTGCCGCTGCAATATCTCTTCCACGAATTCTCCACCTCCGAAGACTCTGCCACCTTCCGTGACGGCGCTAGGTTACCGCCACAGCAGTGACGCCACCGTGGTCGTTGTCCAAGATTTATCCACAAACGTAAGTCAGGAAGCCGTCGTAGTCAAAATCATAAGCGATTCAACTAATCAAGGAAGTCTAAATCCAAATCCGCCGAGTTTCGTAACAGAGAGAAAAGAAGAATTTGTCCATTCGATTAGGTCAGTTTCAAAGGATCATCAATCCTCTCCATGTCCAGGCCGCAATCTCTCCGTTGCAGACATATTGAGCATCAACCACGAAGAAGACGAAGAAATTGAAGTCGTGGATTCATCAACGGCAGTCGGAATCGGTCCCTCAAACGACAGCGGCAAAGAAATAGAGAAATCCAGAAACAAAAACGGCTATTGA

mRNA sequence

ATGGCTTCCAGCTTCTCCATTCTCACTAGAACCCTCAACAAATCTCAGTGGGTTTTTCAAATCAACGACCTCTTTGACCAAAATACCCTCATCGTTGCTTCACAGACCCCCATTTTCGTCTTCCAGCCGTCCGAATCCGTCCAGATCGCGTGGATCTCGCTCCAGACAGATCGTCGTCGTTTGTTCGAGGAAGGAGACGTTCCAAATCTTCGTCGAACATCAAGCTCGGTTGCTTTGAGGAAGGAGACATCTGAAGCTCGTTCCAGATCTCCGTCGGACATCAAGCTCGGTTGCTGCAGTTGTGGCTCATGGCCACGCCACGCTTTTCATCTCGCGTGCATTGATACTTGGCTGAAATCCAATTTGAGTTGCCCTCTTTGCCGCTGCAATATCTCTTCCACGAATTCTCCACCTCCGAAGACTCTGCCACCTTCCGTGACGGCGCTAGGTTACCGCCACAGCAGTGACGCCACCGTGGTCGTTGTCCAAGATTTATCCACAAACGTAAGTCAGGAAGCCGTCGTAGTCAAAATCATAAGCGATTCAACTAATCAAGGAAGTCTAAATCCAAATCCGCCGAGTTTCGTAACAGAGAGAAAAGAAGAATTTGTCCATTCGATTAGGTCAGTTTCAAAGGATCATCAATCCTCTCCATGTCCAGGCCGCAATCTCTCCGTTGCAGACATATTGAGCATCAACCACGAAGAAGACGAAGAAATTGAAGTCGTGGATTCATCAACGGCAGTCGGAATCGGTCCCTCAAACGACAGCGGCAAAGAAATAGAGAAATCCAGAAACAAAAACGGCTATTGA

Coding sequence (CDS)

ATGGCTTCCAGCTTCTCCATTCTCACTAGAACCCTCAACAAATCTCAGTGGGTTTTTCAAATCAACGACCTCTTTGACCAAAATACCCTCATCGTTGCTTCACAGACCCCCATTTTCGTCTTCCAGCCGTCCGAATCCGTCCAGATCGCGTGGATCTCGCTCCAGACAGATCGTCGTCGTTTGTTCGAGGAAGGAGACGTTCCAAATCTTCGTCGAACATCAAGCTCGGTTGCTTTGAGGAAGGAGACATCTGAAGCTCGTTCCAGATCTCCGTCGGACATCAAGCTCGGTTGCTGCAGTTGTGGCTCATGGCCACGCCACGCTTTTCATCTCGCGTGCATTGATACTTGGCTGAAATCCAATTTGAGTTGCCCTCTTTGCCGCTGCAATATCTCTTCCACGAATTCTCCACCTCCGAAGACTCTGCCACCTTCCGTGACGGCGCTAGGTTACCGCCACAGCAGTGACGCCACCGTGGTCGTTGTCCAAGATTTATCCACAAACGTAAGTCAGGAAGCCGTCGTAGTCAAAATCATAAGCGATTCAACTAATCAAGGAAGTCTAAATCCAAATCCGCCGAGTTTCGTAACAGAGAGAAAAGAAGAATTTGTCCATTCGATTAGGTCAGTTTCAAAGGATCATCAATCCTCTCCATGTCCAGGCCGCAATCTCTCCGTTGCAGACATATTGAGCATCAACCACGAAGAAGACGAAGAAATTGAAGTCGTGGATTCATCAACGGCAGTCGGAATCGGTCCCTCAAACGACAGCGGCAAAGAAATAGAGAAATCCAGAAACAAAAACGGCTATTGA

Protein sequence

MASSFSILTRTLNKSQWVFQINDLFDQNTLIVASQTPIFVFQPSESVQIAWISLQTDRRRLFEEGDVPNLRRTSSSVALRKETSEARSRSPSDIKLGCCSCGSWPRHAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLSTNVSQEAVVVKIISDSTNQGSLNPNPPSFVTERKEEFVHSIRSVSKDHQSSPCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNGY

Homology

[Close]

BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-06
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTN----SPPPKTLPPSVTALGYRHSSDATVVVV 166
           HAFH  CIDTWLKS+ +CPLCR NI+       SP P+   P  T     H     VVVV
Sbjct: 178 HAFHQQCIDTWLKSHSNCPLCRANITFVTVGLASPEPEGCAPGETGGDNTHE----VVVV 237

Query: 167 QDLSTNVSQE 173
            D   N+ +E
Sbjct: 238 MDGLENLCEE 243

[Close]

BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-06
Identity = 54/149 (36.24%), Postives = 70/149 (46.98%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNI--SSTNSPPPKTLPPSVTALGYRHSSDATVVVVQ- 166
           HAFH+ CIDTWLKS+ +CPLCR  I  SS       T    VT      + D +VVVV  
Sbjct: 180 HAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNL 239

Query: 167 DLSTNVSQEAVVVKIISDSTNQGSLNPNPPSFVTERKEEFVHSIRSVSKDHQSSPCPGRN 226
           DL  + S+        +++ N+GS  P PP     R  E         +   S    G  
Sbjct: 240 DLENSRSR--------NETVNEGS-TPKPPEMQDSRDGE--------ERRSASLNSGGGV 299

Query: 227 LSVADILSINHEEDEEIEVVDSSTAVGIG 253
           +S+ADIL    E+DEE   V +S  V  G
Sbjct: 300 VSIADILR-EIEDDEESAGVGTSRWVEEG 310

[Close]

BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTN 136
           HAFHL CIDTWL SN +CPLCR ++S++N
Sbjct: 228 HAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256

[Close]

BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.0e-05
Identity = 50/169 (29.59%), Postives = 75/169 (44.38%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKS+ +CPLCR  ++  N+P           +  + +S      V +++
Sbjct: 163 HAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEIN 222

Query: 167 TNVSQ--------EAVVVKIISDSTNQGSLNPNPPSFVTERKEEFVHSIRSVSKDHQSSP 226
            N++         ++VVV    +    GS N +       R E  +   R  +KD  S P
Sbjct: 223 LNLAGYESQTGDFDSVVV---IEDLEIGSRNSD------ARSELQLPEERRETKDEDSLP 282

Query: 227 C-------PGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKE 261
                    G  +S+AD+L     EDEE E    S  VG     + G++
Sbjct: 283 IRRSVSLNSGVVVSIADVL--REIEDEEGE----SGGVGTSQRREEGED 316

[Close]

BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNIS-STNSPPPKTLPPSVT 148
           H FH+ CID WL++N +CPLCR  +S  T+ PP +   PS +
Sbjct: 159 HLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTS 200

[Close]

BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1KJE3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494536 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSDA VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPPSF-----VTERKEEFVHSIRSVSKDHQSSPCPG 226
            NVSQE+VVV+I+SDSTNQ   NPNP SF      TER+EE +HSIRSVS+DH SSPCPG
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPRSFDQGDGRTERREESIHSIRSVSEDHHSSPCPG 284

Query: 227 RNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
            NLSVAD+LSINHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 ENLSVADVLSINHEEDEEIEALDSSMAAGIGPSNGNNKETEKSRNKNG 332

[Close]

BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1HMW7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464384 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 8.2e-61
Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSDA VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPP----SF-----VTERKEEFVHSIRSVSKDHQSS 226
            NVSQE+VVV+I+SDSTNQ   NPNP     SF      TER+EE VHSIRSVS+DH SS
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPSPNPRSFDQGDGRTERREESVHSIRSVSEDHHSS 284

Query: 227 PCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
           PCPG NLSVAD+L+INHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 PCPGENLSVADVLNINHEEDEEIEALDSSMAAGIGPSNGNNKETEKSRNKNG 336

[Close]

BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1H2X8 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459995 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55
Identity = 125/174 (71.84%), Postives = 138/174 (79.31%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHLACIDTWLKSN SCP CR NI+ TN PPP+T PPSVT LGYRHSSDA VVVVQDLS
Sbjct: 164 HAFHLACIDTWLKSNSSCPFCRSNITPTNPPPPETPPPSVTVLGYRHSSDAAVVVVQDLS 223

Query: 167 TNVSQEAVVVKIISDSTN--QGSLNPNP---PSFV------TER-KEEFVHSIRSVSKDH 226
            NVSQE VVV+I++DSTN  QGS NPNP   P  V      TER +EE + SIRSVS+DH
Sbjct: 224 ENVSQEVVVVEIVTDSTNRDQGSPNPNPNPNPPSVDRGDGRTERNREESIRSIRSVSEDH 283

Query: 227 QSSPCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKN 269
           QSSPCP R LSVADILSIN EEDEE+E ++SS A G GPSN+ GKE EKSRN+N
Sbjct: 284 QSSPCPVRILSVADILSINEEEDEEVEAMNSSMAAGSGPSNNDGKETEKSRNRN 337

[Close]

BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1DSH1 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111022765 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 125/176 (71.02%), Postives = 135/176 (76.70%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCRCNI+STN  PP+T PPSVTALGYRH SDA VVVVQD S
Sbjct: 169 HAFHLVCIDTWLKSNSSCPLCRCNIASTNPNPPETPPPSVTALGYRHRSDAAVVVVQDPS 228

Query: 167 TNVSQEAVVVKIISDS------TNQGSLNPNPPSFV-----TERKEEFVHSIRSVSKDHQ 226
            NVSQEAVVV+II  S       +QG  N NPPS       TER+EE V SIRSVS+D Q
Sbjct: 229 ENVSQEAVVVEIIGHSISNPSNQDQGGSNSNPPSSEQGDGGTERREETVRSIRSVSEDQQ 288

Query: 227 S--SPCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
           S  SPC GRNLSVADILSI+H+EDEE+E VDSS A GIGPSND GKE  KSR +NG
Sbjct: 289 SSDSPCLGRNLSVADILSISHDEDEEVEAVDSSMAAGIGPSNDDGKETGKSRIRNG 344

[Close]

BLAST of Lcy03g000180 vs. ExPASy TrEMBL
Match: A0A6J1L482 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111498996 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 9.7e-54
Identity = 119/172 (69.19%), Postives = 134/172 (77.91%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHLACIDTWLKSN SCP CR NI+ TN PPP+T PPSVT LGYRHSSDA VVVVQDLS
Sbjct: 164 HAFHLACIDTWLKSNSSCPFCRSNITPTNPPPPETPPPSVTVLGYRHSSDAAVVVVQDLS 223

Query: 167 TNVSQEAVVVKIISDSTN--QGS--LNPNPPSF------VTERKEEFVHSIRSVSKDHQS 226
            NVSQE VVV+I++DSTN  QGS   NPNPPS         + +EE + SIRSVS+DHQS
Sbjct: 224 ENVSQEVVVVEIVTDSTNRDQGSPNPNPNPPSVDRGDGRTEKNREESIRSIRSVSEDHQS 283

Query: 227 SPCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKN 269
           SPCP R LSVADILSI+ EEDEE+E ++S  A   GPSN+ GKE EKSRN+N
Sbjct: 284 SPCPVRILSVADILSIDEEEDEEVEAMNSPMAADTGPSNNDGKETEKSRNRN 335

[Close]

BLAST of Lcy03g000180 vs. NCBI nr
Match: XP_023000254.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 2.4e-62
Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSDA VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPPSF-----VTERKEEFVHSIRSVSKDHQSSPCPG 226
            NVSQE+VVV+I+SDSTNQ   NPNP SF      TER+EE +HSIRSVS+DH SSPCPG
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPRSFDQGDGRTERREESIHSIRSVSEDHHSSPCPG 284

Query: 227 RNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
            NLSVAD+LSINHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 ENLSVADVLSINHEEDEEIEALDSSMAAGIGPSNGNNKETEKSRNKNG 332

[Close]

BLAST of Lcy03g000180 vs. NCBI nr
Match: XP_023513580.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 4.4e-61
Identity = 126/168 (75.00%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSD  VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDTAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPPSF-----VTERKEEFVHSIRSVSKDHQSSPCPG 226
            NVSQE+VVV+I+SDSTNQ   NPNP SF      TER+EE +HSIRSVS+DH S+PCPG
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPRSFDQGHGRTERREESIHSIRSVSEDHHSAPCPG 284

Query: 227 RNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
            NLSVAD+L+INHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 ENLSVADVLNINHEEDEEIEALDSSMAAGIGPSNANNKETEKSRNKNG 332

[Close]

BLAST of Lcy03g000180 vs. NCBI nr
Match: KAG6593770.1 (RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60
Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSDA VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPP----SF-----VTERKEEFVHSIRSVSKDHQSS 226
            NVSQE+VVV+I+SDSTNQ   NPNP     SF      TER+EE VHSIRSVS+DH SS
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPSPNPRSFDQGDGRTERREESVHSIRSVSEDHHSS 284

Query: 227 PCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
           PCPG NLSVAD+L+INHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 PCPGENLSVADVLNINHEEDEEIEALDSSMAAGIGPSNGNNKETEKSRNKNG 336

[Close]

BLAST of Lcy03g000180 vs. NCBI nr
Match: XP_022964349.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60
Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSDA VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPP----SF-----VTERKEEFVHSIRSVSKDHQSS 226
            NVSQE+VVV+I+SDSTNQ   NPNP     SF      TER+EE VHSIRSVS+DH SS
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPSPNPRSFDQGDGRTERREESVHSIRSVSEDHHSS 284

Query: 227 PCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
           PCPG NLSVAD+L+INHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 PCPGENLSVADVLNINHEEDEEIEALDSSMAAGIGPSNGNNKETEKSRNKNG 336

[Close]

BLAST of Lcy03g000180 vs. NCBI nr
Match: KAG7026103.1 (RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-60
Identity = 129/172 (75.00%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKSN SCPLCR NI+STN PP +T PP VTALGYRHSSDA VVVVQDLS
Sbjct: 165 HAFHLPCIDTWLKSNSSCPLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLS 224

Query: 167 TNVSQEAVVVKIISDSTNQGSLNPNPP----SF-----VTERKEEFVHSIRSVSKDHQSS 226
            NVSQE+VVV+I+SDSTNQ   NPNP     SF      TER+EE VHSIRSVS+DH SS
Sbjct: 225 ANVSQESVVVEIVSDSTNQEQENPNPSPNPRSFDQGDGRTERREESVHSIRSVSEDHHSS 284

Query: 227 PCPGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKEIEKSRNKNG 270
           PCPG NLSVAD+L+INHEEDEEIE +DSS A GIGPSN + KE EKSRNKNG
Sbjct: 285 PCPGENLSVADVLNINHEEDEEIEALDSSMAAGIGPSNGNNKETEKSRNKNG 336

[Close]

BLAST of Lcy03g000180 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-07
Identity = 54/149 (36.24%), Postives = 70/149 (46.98%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNI--SSTNSPPPKTLPPSVTALGYRHSSDATVVVVQ- 166
           HAFH+ CIDTWLKS+ +CPLCR  I  SS       T    VT      + D +VVVV  
Sbjct: 180 HAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNL 239

Query: 167 DLSTNVSQEAVVVKIISDSTNQGSLNPNPPSFVTERKEEFVHSIRSVSKDHQSSPCPGRN 226
           DL  + S+        +++ N+GS  P PP     R  E         +   S    G  
Sbjct: 240 DLENSRSR--------NETVNEGS-TPKPPEMQDSRDGE--------ERRSASLNSGGGV 299

Query: 227 LSVADILSINHEEDEEIEVVDSSTAVGIG 253
           +S+ADIL    E+DEE   V +S  V  G
Sbjct: 300 VSIADILR-EIEDDEESAGVGTSRWVEEG 310

[Close]

BLAST of Lcy03g000180 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-06
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTN 136
           HAFHL CIDTWL SN +CPLCR ++S++N
Sbjct: 228 HAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256

[Close]

BLAST of Lcy03g000180 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-06
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 106 RHAFHLACIDTWLKSNLSCPLCRCNISSTNS 137
           +HAFHL CIDTWL+S+ +CPLCR  I   N+
Sbjct: 237 KHAFHLYCIDTWLRSHTNCPLCRAPIVEANT 267

[Close]

BLAST of Lcy03g000180 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-06
Identity = 50/169 (29.59%), Postives = 75/169 (44.38%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNISSTNSPPPKTLPPSVTALGYRHSSDATVVVVQDLS 166
           HAFHL CIDTWLKS+ +CPLCR  ++  N+P           +  + +S      V +++
Sbjct: 163 HAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEIN 222

Query: 167 TNVSQ--------EAVVVKIISDSTNQGSLNPNPPSFVTERKEEFVHSIRSVSKDHQSSP 226
            N++         ++VVV    +    GS N +       R E  +   R  +KD  S P
Sbjct: 223 LNLAGYESQTGDFDSVVV---IEDLEIGSRNSD------ARSELQLPEERRETKDEDSLP 282

Query: 227 C-------PGRNLSVADILSINHEEDEEIEVVDSSTAVGIGPSNDSGKE 261
                    G  +S+AD+L     EDEE E    S  VG     + G++
Sbjct: 283 IRRSVSLNSGVVVSIADVL--REIEDEEGE----SGGVGTSQRREEGED 316

[Close]

BLAST of Lcy03g000180 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-05
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 107 HAFHLACIDTWLKSNLSCPLCRCNIS-STNSPPPKTLPPSVT 148
           H FH+ CID WL++N +CPLCR  +S  T+ PP +   PS +
Sbjct: 159 HLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTS 200

The following BLAST results are available for this feature:

BLAST of Lcy03g000180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XLY8	4.2e-06	45.71	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9SRQ8	5.5e-06	36.24	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q7X843	3.6e-05	68.97	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q9LF64	8.0e-05	29.59	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LSW9	1.8e-04	47.62	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]

BLAST of Lcy03g000180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJE3	1.1e-62	76.79	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494536 P...	[more]
A0A6J1HMW7	8.2e-61	75.00	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464384...	[more]
A0A6J1H2X8	1.3e-55	71.84	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459995...	[more]
A0A6J1DSH1	1.5e-54	71.02	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102276...	[more]
A0A6J1L482	9.7e-54	69.19	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111498996 P...	[more]

BLAST of Lcy03g000180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000254.1	2.4e-62	76.79	RING-H2 finger protein ATL52-like [Cucurbita maxima]	[more]
XP_023513580.1	4.4e-61	75.00	RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593770.1	1.7e-60	75.00	RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964349.1	1.7e-60	75.00	RING-H2 finger protein ATL52-like [Cucurbita moschata]	[more]
KAG7026103.1	1.7e-60	75.00	RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Lcy03g000180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03550.1	3.9e-07	36.24	RING/U-box superfamily protein	[more]
AT3G48030.1	2.5e-06	68.97	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]
AT4G33565.1	5.7e-06	61.29	RING/U-box superfamily protein	[more]
AT5G17600.1	5.7e-06	29.59	RING/U-box superfamily protein	[more]
AT5G43420.1	1.3e-05	47.62	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 103..128 e-value: 6.7E-9 score: 35.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 59..135 e-value: 1.3E-9 score: 39.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..270
None	No IPR available	PANTHER	PTHR45676:SF95	RING-H2 FINGER PROTEIN ATL53-RELATED	coord: 106..241
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 99..135
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 106..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000180.1	Lcy03g000180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding