Lag0027851 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027851
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetroelement pol polyprotein-like
Locationchr8: 6040875 .. 6041427 (+)
RNA-Seq ExpressionLag0027851
SyntenyLag0027851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACCATTAGGGCCGATATTGCAGAATTAGCTAACGCTCTTAAAAACATAACTGTGGTAAGTAATGTTCAGCAGTTGCCAGTGGTGGAGCTTGTTGCAGTTGTAAACCAAGTGGCAGCAAATCTTGTGTCTATTGTGGTGAAAAGCATAATTATGAGTTTTTCCTAACAATCCAACTTCTGTGTTTTTTGTAGGTAATCAAAGGAATAACCCTATTCAAATTTTTATAATTCAGGTTGGTGTAACCACCCAACTTTGCATGGGGAGGGCAAGGAAGCAATTCGCGAGCCCCCAAGCACAACAAAAGGTGGTGAACCAGTTCGAATTTGCTAAATCACAGGCATTGCCCCAACAAAATAAGCTGGCTACCCATCCAAACTCGGGTAATTCTCTGGAGTTAATGATGAAGGATTATATGGCTCGTAATGATGTCTTAATCCAAAGTCACCAAGCTTCATTGAGAGTCCTAGAGTTTCAAGTGGACCAGCTAGCTAATGAGCTGAAGGCACGACTTCCGGGAACATTCCTTCATATATTGAACACCCTATAA

mRNA sequence

ATGTCTACCATTAGGGCCGATATTGCAGAATTAGCTAACGCTCTTAAAAACATAACTGTGGTAAGTAATGTTCAGCAGTTGCCAGTGGTGGAGCTTGTTGCAGTTGTAAACCAAGTGGCAGCAAATCTTGTGTCTATTGTGGTTGGTGTAACCACCCAACTTTGCATGGGGAGGGCAAGGAAGCAATTCGCGAGCCCCCAAGCACAACAAAAGGTGGTGAACCAGTTCGAATTTGCTAAATCACAGGCATTGCCCCAACAAAATAAGCTGGCTACCCATCCAAACTCGGGTAATTCTCTGGAGTTAATGATGAAGGATTATATGGCTCGTAATGATGTCTTAATCCAAAGTCACCAAGCTTCATTGAGAGTCCTAGAGTTTCAAGTGGACCAGCTAGCTAATGAGCTGAAGGCACGACTTCCGGGAACATTCCTTCATATATTGAACACCCTATAA

Coding sequence (CDS)

ATGTCTACCATTAGGGCCGATATTGCAGAATTAGCTAACGCTCTTAAAAACATAACTGTGGTAAGTAATGTTCAGCAGTTGCCAGTGGTGGAGCTTGTTGCAGTTGTAAACCAAGTGGCAGCAAATCTTGTGTCTATTGTGGTTGGTGTAACCACCCAACTTTGCATGGGGAGGGCAAGGAAGCAATTCGCGAGCCCCCAAGCACAACAAAAGGTGGTGAACCAGTTCGAATTTGCTAAATCACAGGCATTGCCCCAACAAAATAAGCTGGCTACCCATCCAAACTCGGGTAATTCTCTGGAGTTAATGATGAAGGATTATATGGCTCGTAATGATGTCTTAATCCAAAGTCACCAAGCTTCATTGAGAGTCCTAGAGTTTCAAGTGGACCAGCTAGCTAATGAGCTGAAGGCACGACTTCCGGGAACATTCCTTCATATATTGAACACCCTATAA

Protein sequence

MSTIRADIAELANALKNITVVSNVQQLPVVELVAVVNQVAANLVSIVVGVTTQLCMGRARKQFASPQAQQKVVNQFEFAKSQALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGTFLHILNTL
Homology
BLAST of Lag0027851 vs. NCBI nr
Match: XP_030504954.1 (uncharacterized protein LOC115719921 [Cannabis sativa])

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-05
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 98  NSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGTF 145
           +SLE +M+DYMA+ND +IQS  ASLR LE Q+  LANELKAR  G+F
Sbjct: 120 SSLESLMRDYMAKNDAVIQSQAASLRNLELQLGHLANELKARPQGSF 166

BLAST of Lag0027851 vs. NCBI nr
Match: XP_030478190.1 (uncharacterized protein LOC115695250 [Cannabis sativa])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 67  QAQQKVVNQFEFAKSQALPQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLE 126
           QAQ K      F++     Q ++    P S  SLE +M+DYMA+ND +IQS  ASLR LE
Sbjct: 290 QAQGKQPFPPGFSQQPRPQQPHQPQCSPTS--SLENLMRDYMAKNDAIIQSQAASLRNLE 349

Query: 127 FQVDQLANELKARLPGT 144
            Q+ QLAN+LK RL GT
Sbjct: 350 IQLGQLANDLKNRLQGT 364

BLAST of Lag0027851 vs. NCBI nr
Match: XP_023521781.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-05
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 74  NQFEFAKSQALPQ-QNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQL 133
           NQ  +   QA  Q +         G SLE ++K+YMA+ND +IQS QASLR LE QV QL
Sbjct: 185 NQLTYGSQQATTQGEGTSQAQHIPGTSLESLIKEYMAKNDAVIQSQQASLRNLEVQVGQL 244

Query: 134 ANELKAR 140
           ANEL+ R
Sbjct: 245 ANELRNR 251

BLAST of Lag0027851 vs. NCBI nr
Match: KAA3473721.1 (retroelement pol polyprotein-like [Gossypium australe])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-05
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 85  PQQNKLATHPNSGNSLELMMKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPG 143
           PQQ +      + NSLE ++K YMA+ND LIQS  A+L+ LE QV QLA EL+ RL G
Sbjct: 266 PQQVQKLVQAKASNSLESLLKTYMAKNDALIQSQAATLKNLENQVGQLATELRNRLQG 323

BLAST of Lag0027851 vs. NCBI nr
Match: XP_030502440.1 (uncharacterized protein LOC115717596 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 54/160 (33.75%), Postives = 78/160 (48.75%), Query Frame = 0

Query: 1   MSTIRADIAELANALKNITVVSNVQQLPVVELVAVVNQVA--------------ANLVSI 60
           ++T+ A +A + N LKN+ +  +VQ    ++   + + V               +N  + 
Sbjct: 203 LTTLTAQMASMTNILKNMNMGGSVQLAADIQRAEISSSVCYAGNQNFNRNNNPYSNSYNP 262

Query: 61  VVGVTTQLCMGRARKQFASPQAQQKVVNQFEFAKSQALPQQNKLATHPNSG---NSLELM 120
                     G      +  QAQ K     EF++ Q  PQQ     H   G   +SLE +
Sbjct: 263 AWKHHPNFSWGGQGASSSGAQAQGKQSFPLEFSQ-QPRPQQ----PHQPQGSQTSSLESL 322

Query: 121 MKDYMARNDVLIQSHQASLRVLEFQVDQLANELKARLPGT 144
           M+DYMA+NDV+IQS  ASLR LE Q+ QLAN+LK R  GT
Sbjct: 323 MRDYMAKNDVVIQSQAASLRNLEIQLGQLANDLKNRPQGT 357

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030504954.12.5e-0563.83uncharacterized protein LOC115719921 [Cannabis sativa][more]
XP_030478190.15.6e-0549.35uncharacterized protein LOC115695250 [Cannabis sativa][more]
XP_023521781.19.6e-0550.75LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pe... [more]
KAA3473721.19.6e-0553.45retroelement pol polyprotein-like [Gossypium australe][more]
XP_030502440.11.3e-0433.75uncharacterized protein LOC115717596 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027851.1Lag0027851.1mRNA