Lag0027807 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0027807
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr8: 5354170 .. 5354508 (-)
RNA-Seq ExpressionLag0027807
SyntenyLag0027807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGTTCCAAGACTCCCTCAATAGATGTGAGCTTATGGACGTCGGGTTCTCTAGAGATAATTTCACCGGGAAAAGAGGTAAAAACAAAAAATCCCAAATTAAGGAGCGCTTAGACAGGTTTTGTATAAACCATTCTATGGCTGTATTAGCCCCTGATATCAAAGTTAAGCATTTAAATTACTTTGGCTCGGATCATAGAGCAATCATAGCGTGCTGGGAGGATGATCCCACCCCTGCTATGATTTTGAAGAAAGGAAAAATGCTGCGTTTTGACGAAGGTTGGCTGAAAGTCAAAGGCGCTAGGGATGTTGTTGCTAACAGTTGGGTGGGCTGA

mRNA sequence

ATGGATATGTTCCAAGACTCCCTCAATAGATGTGAGCTTATGGACGTCGGGTTCTCTAGAGATAATTTCACCGGGAAAAGAGGTAAAAACAAAAAATCCCAAATTAAGGAGCGCTTAGACAGGTTTTGTATAAACCATTCTATGGCTGTATTAGCCCCTGATATCAAAGTTAAGCATTTAAATTACTTTGGCTCGGATCATAGAGCAATCATAGCGTGCTGGGAGGATGATCCCACCCCTGCTATGATTTTGAAGAAAGGAAAAATGCTGCGTTTTGACGAAGGTTGGCTGAAAGTCAAAGGCGCTAGGGATGTTGTTGCTAACAGTTGGGTGGGCTGA

Coding sequence (CDS)

ATGGATATGTTCCAAGACTCCCTCAATAGATGTGAGCTTATGGACGTCGGGTTCTCTAGAGATAATTTCACCGGGAAAAGAGGTAAAAACAAAAAATCCCAAATTAAGGAGCGCTTAGACAGGTTTTGTATAAACCATTCTATGGCTGTATTAGCCCCTGATATCAAAGTTAAGCATTTAAATTACTTTGGCTCGGATCATAGAGCAATCATAGCGTGCTGGGAGGATGATCCCACCCCTGCTATGATTTTGAAGAAAGGAAAAATGCTGCGTTTTGACGAAGGTTGGCTGAAAGTCAAAGGCGCTAGGGATGTTGTTGCTAACAGTTGGGTGGGCTGA

Protein sequence

MDMFQDSLNRCELMDVGFSRDNFTGKRGKNKKSQIKERLDRFCINHSMAVLAPDIKVKHLNYFGSDHRAIIACWEDDPTPAMILKKGKMLRFDEGWLKVKGARDVVANSWVG
Homology
BLAST of Lag0027807 vs. NCBI nr
Match: XP_010694404.1 (PREDICTED: uncharacterized protein LOC104907208 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 1   MDMFQDSLNRCELMDVGFSRDNFTGKRGKNKKSQIKERLDRFCINHSMAVLAPDIKVKHL 60
           MD F+++++ CEL D+G+    FT +RG +  + +KERLDRF  N+    + P  +V H 
Sbjct: 158 MDAFRNTIDDCELRDLGYKGSVFTWQRGNSMATLVKERLDRFLANNGWMAMFPYSEVIHF 217

Query: 61  NYFGSDHRAIIACWEDDPTPAMILKKGKMLRFDEGWLKVKGARDVVANSW 111
             + SDH  I+  +  D T     KKGK+ RF+  WL  +   +VVA +W
Sbjct: 218 PIYKSDHAPILLKFGKDKTR---YKKGKLFRFEALWLSKEECAEVVAKAW 264

BLAST of Lag0027807 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 1   MDMFQDSLNRCELMDVGFSRDNFTGKRGKNKKSQIKERLDRFCINHSMAVLAPDIKVKHL 60
           M  F+ +L++C L ++    D FT  R +   S +KERLD   INH         K+ HL
Sbjct: 159 MQAFRTTLDQCFLTEIPAVGDEFTWARNRKSASSLKERLDWCFINHVWRDNFVWPKLSHL 218

Query: 61  NYFGSDHRAIIACWEDDPTPAMILKKGKMLRFDEGWLKVKGARDVVANSWV 112
           +Y+GSDHR ++A  + + TP     +    RF++ WLK K   ++++NSW+
Sbjct: 219 DYYGSDHRVLLAEIDFNLTPPAQAPRKTRFRFEQFWLKDKECYEIISNSWL 269

BLAST of Lag0027807 vs. NCBI nr
Match: XP_021751074.1 (uncharacterized protein LOC110716746 [Chenopodium quinoa])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 0

Query: 2   DMFQDSLNRCELMDVGFSRDNFTGKRGKNKKSQIKERLDRFCINHSMAVLAPDIKVKHLN 61
           D+ +++++ C+L D+G+   +FT    +     I+ERLDRF  N S  V+ P   V HL 
Sbjct: 19  DILREAVDYCQLEDLGYLGHDFTWANNRGGDENIQERLDRFLANRSWCVMFPASFVTHLT 78

Query: 62  YFGSDHRAIIACWEDD-PTPAMILKKGKMLRFDEGWLKVKGARDVVANSW 111
              SDH  I+ C ++D   P    KK KM RF+E WL+ +    +V+++W
Sbjct: 79  KRRSDHLPILLCIKEDLHMPKKKKKKKKMYRFEEMWLRDENCERIVSDAW 128

BLAST of Lag0027807 vs. NCBI nr
Match: XP_030502555.1 (uncharacterized protein LOC115717715 [Cannabis sativa])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 1   MDMFQDSLNRCELMDVGFSRDNFTGKRGKNKKSQIKERLDRFCINHSMAVLAPDIKVKHL 60
           M  F+ +L++C L ++  + D FT  + + K + +KERLD   INH         K+ HL
Sbjct: 159 MQAFRTTLDQCFLAEIPAAGDEFTWAKNRKKVAGLKERLDWCFINHVWRDTLAWPKLTHL 218

Query: 61  NYFGSDHRAIIACWEDDPTPAMILKKGKMLRFDEGWLKVKGARDVVANSW 111
           +Y+GSDHR ++A  + +PT  +   +    RF++ WLK K   +++++SW
Sbjct: 219 DYYGSDHRVLLANIDFNPTQPVQAPRKTRFRFEQLWLKDKECAEIISSSW 268

BLAST of Lag0027807 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-11
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 0

Query: 1   MDMFQDSLNRCELMDVGFSRDNFTGKRGKNKKSQIKERLDRFCINHSMAVLAPDIKVKHL 60
           M  F+D+L+ C L+D GF  D FT   G   +  I ERLDRF IN ++  +   ++++HL
Sbjct: 67  MQNFKDTLDLCGLLDPGFVGDIFTWCDGHKYRQPIWERLDRFLINTAIFQIQETLEIRHL 126

Query: 61  NYFGSDHRAIIACWEDDPTPAMILKKGKM-LRFDEGWLKVKGARDVVANSW 111
            +  SDHR I+A W       +  +KG+   RF+E W   +  +++V   W
Sbjct: 127 EFLASDHRPILAEWLGVGEATVGRRKGRRPHRFEEQWFSFQECKEIVRRVW 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_010694404.11.2e-1237.27PREDICTED: uncharacterized protein LOC104907208 [Beta vulgaris subsp. vulgaris][more]
XP_030497600.11.7e-1135.14uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_021751074.11.7e-1135.45uncharacterized protein LOC110716746 [Chenopodium quinoa][more]
XP_030502555.11.7e-1133.64uncharacterized protein LOC115717715 [Cannabis sativa][more]
XP_022155286.15.1e-1135.14uncharacterized protein LOC111022423 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..73
e-value: 4.7E-5
score: 25.3
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0027807.1Lag0027807.1mRNA