IVF0023593 (gene) Melon (IVF77) v1

Overview


Name	IVF0023593
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Beta-galactosidase
Location	chr09: 3518901 .. 3519504 (+)
RNA-Seq Expression	IVF0023593
Synteny	IVF0023593

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGTGTAGAGAACTAGTCTAGAGAGATCCCACCGATGGTTTGTAGTATTCTAGAATTGAAGAGGTTGATAGGATTTATGACTTTCTTGTTGGTCTTAATACTAAGTTTGATGTAGTTCGAGGGCGTATATTAGGCCAGAGACCGATTTCCTCCCTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAACTGCTTTTAGTGTGAGGTTCTCTACCAGTGGCAATGACAAGTACAATGGAAAACCAATTCCAGCATTGTAAAAAACAATGACATACCAAAGAACGGTGTTGGAAGTTACATGGTTGTTCCCCATGAGGTAAGAAATGCCCTCCCAACGATAAACAGAACACATGCGAGCAACGTGAGTGAGTCTGCTAGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCAAGCACGGCCCCGCTACTCTATATGTCATTGTCCAATCAGGTATACCTCAATCCTTCGGTCTTATTAATGTTGATGAGAAGAACCCCTGAATTTTGGATTCTGGGGCCACAGATCATTTGACTGGGTCCTCTGA

mRNA sequence

ATGGAACTGTGTAGAGAACTATATTCTAGAATTGAAGAGGTTGATAGGATTTATGACTTTCTTGTTGGTCTTAATACTAAGTTTGATGTAGTTCGAGGGCGTATATTAGGCCAGAGACCGATTTCCTCCCTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAACTGCTTTTAGTGTGAGGTTCTCTACCAGTGGCAATGACAAGTACAATGGAAAACCAATTCCAAACGGTGTTGGAAGTTACATGGTTGTTCCCCATGAGGTAAGAAATGCCCTCCCAACGATAAACAGAACACATGCGAGCAACGTGAGTGAGTCTGCTAGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCAAGCACGGCCCCGCTACTCTATATGTCATTGTCCAATCAGAACCCCTGAATTTTGGATTCTGGGGCCACAGATCATTTGACTGGGTCCTCTGA

Coding sequence (CDS)

ATGGAACTGTGTAGAGAACTATATTCTAGAATTGAAGAGGTTGATAGGATTTATGACTTTCTTGTTGGTCTTAATACTAAGTTTGATGTAGTTCGAGGGCGTATATTAGGCCAGAGACCGATTTCCTCCCTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAACTGCTTTTAGTGTGAGGTTCTCTACCAGTGGCAATGACAAGTACAATGGAAAACCAATTCCAAACGGTGTTGGAAGTTACATGGTTGTTCCCCATGAGGTAAGAAATGCCCTCCCAACGATAAACAGAACACATGCGAGCAACGTGAGTGAGTCTGCTAGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCAAGCACGGCCCCGCTACTCTATATGTCATTGTCCAATCAGAACCCCTGAATTTTGGATTCTGGGGCCACAGATCATTTGACTGGGTCCTCTGA

Protein sequence

MELCRELYSRIEEVDRIYDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYNGKPIPNGVGSYMVVPHEVRNALPTINRTHASNVSESARPSQPPESQGNQIKHGPATLYVIVQSEPLNFGFWGHRSFDWVL

Homology

[Close]

BLAST of IVF0023593 vs. ExPASy TrEMBL
Match: A0A5D3BUT6 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001100 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.6e-45
Identity = 104/126 (82.54%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 28  FDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYN 87
           FDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYN
Sbjct: 80  FDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYN 139

Query: 88  GKPIPNGVGSYMVVPHEVRNALPTINRTHASNVSESARPSQPPESQGNQIKHGPATLYVI 147
           GKPIP               AL     THASNVSESARPSQPPESQGNQIKHGPATLYVI
Sbjct: 140 GKPIP---------------AL-----THASNVSESARPSQPPESQGNQIKHGPATLYVI 185

Query: 148 VQSEPL 154
           VQS+ L
Sbjct: 200 VQSDHL 185

[Close]

BLAST of IVF0023593 vs. ExPASy TrEMBL
Match: A0A5A7VGG4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001090 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.0e-42
Identity = 106/175 (60.57%), Postives = 116/175 (66.29%), Query Frame = 0


Query: 1   MELCRE-----LYSRIEEVDRIYDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEE 60
           M LCR+      YSRIE+VDRIYDFL GLN KFDVVRG ILG+RPI SLMEVCSEICLEE
Sbjct: 88  MGLCRDPTNSLQYSRIEKVDRIYDFLAGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 147

Query: 61  DRTSAMNISTTPSIDSTAFSVRFSTSGNDKYNGKPIP--------------------NGV 120
           DRTSAMNISTTPSIDS AF+ R STSGNDK+NGKPIP                      +
Sbjct: 148 DRTSAMNISTTPSIDSAAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 207

Query: 121 GSYMVVPHEVRNALPTINRTHASNVSESARPSQPPESQGNQIKHGPATLYVIVQS 151
           G      ++ +N       T  + VSE   PSQPPESQGNQI HGP TL VIVQS
Sbjct: 208 GDKKRPSNDKQN-------TGRAYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 255

[Close]

BLAST of IVF0023593 vs. ExPASy TrEMBL
Match: A0A5D3C8I9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00870 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.9e-30
Identity = 84/152 (55.26%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 7   LYSRIEEVDRI---------YDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEEDR 66
           LYS+ +   R+         YDFL+ LN KFDVVRGRILGQR I SLMEVC EI L+EDR
Sbjct: 218 LYSKRQNFSRLYMLRKDRQDYDFLIDLNPKFDVVRGRILGQRSIPSLMEVCFEIHLKEDR 277

Query: 67  TSAMNISTTPSIDSTAFSVRFSTSGNDKYNGKPIPNGVGSYMVVPHEVRNALPTINRTHA 126
           TSA+NISTTP+IDS   S R ST+ NDK+NGKPIP         P++ +N       T  
Sbjct: 278 TSALNISTTPAIDSATSSARSSTNVNDKHNGKPIP---VCKKCPPNDKQN-------TWR 337

Query: 127 SNVSESARPSQPPESQGNQIKHGPATLYVIVQ 150
           + VSE   PSQPP+S GNQI H PATL  I Q
Sbjct: 338 AYVSEFVGPSQPPDSHGNQINHDPATLGAIFQ 359

[Close]

BLAST of IVF0023593 vs. ExPASy TrEMBL
Match: A0A5A7U5T5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001050 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 80/132 (60.61%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 18  YDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVR 77
           YDFL+ LN KFDVVRGRILGQR I SLMEVC EI L+EDRTSA+NISTTP+IDS   S R
Sbjct: 174 YDFLIDLNPKFDVVRGRILGQRSIPSLMEVCFEIHLKEDRTSALNISTTPAIDSATSSAR 233

Query: 78  FSTSGNDKYNGKPIPNGVGSYMVVPHEVRNALPTINRTHASNVSESARPSQPPESQGNQI 137
            ST+ NDK+NGKPIP         P++ +N       T  + VSE   PSQPP+S GNQI
Sbjct: 234 SSTNVNDKHNGKPIP---VCKKCPPNDKQN-------TWRAYVSEFVGPSQPPDSHGNQI 293

Query: 138 KHGPATLYVIVQ 150
            H PATL  I Q
Sbjct: 294 NHDPATLGAIFQ 295

[Close]

BLAST of IVF0023593 vs. ExPASy TrEMBL
Match: A0A5A7SRZ5 (Glutathione S-transferase DHAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00300 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 8   YSRIEEVDRIYDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTP 67
           YSRI+E+D+IYDFL GLN KFD+VRG ILGQRPI SLM+VC EI LEEDRTSAM+ISTT 
Sbjct: 542 YSRIKEIDKIYDFLAGLNPKFDIVRGHILGQRPIPSLMKVCYEIRLEEDRTSAMSISTTL 601

Query: 68  SIDSTAFSVRFSTSGNDKYNGK-----------PIP-NGVGSYMVVPHEV 106
           +IDS  FS R STSG+DK+NG+            IP N VG+YMVV  EV
Sbjct: 602 TIDSATFSARSSTSGSDKHNGRLLLYMSIAKNNDIPKNSVGNYMVVSQEV 651

[Close]

BLAST of IVF0023593 vs. NCBI nr
Match: KAA0037521.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK01996.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (482), Expect = 1.06e-57
Identity = 104/126 (82.54%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 28  FDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYN 87
           FDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYN
Sbjct: 80  FDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYN 139

Query: 88  GKPIPNGVGSYMVVPHEVRNALPTINRTHASNVSESARPSQPPESQGNQIKHGPATLYVI 147
           GKPIP               AL     THASNVSESARPSQPPESQGNQIKHGPATLYVI
Sbjct: 140 GKPIP---------------AL-----THASNVSESARPSQPPESQGNQIKHGPATLYVI 185

Query: 148 VQSEPL 153
           VQS+ L
Sbjct: 200 VQSDHL 185

[Close]

BLAST of IVF0023593 vs. NCBI nr
Match: KAA0064801.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 1.17e-52
Identity = 106/168 (63.10%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 1   MELCRE-----LYSRIEEVDRIYDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEE 60
           M LCR+      YSRIE+VDRIYDFL GLN KFDVVRG ILG+RPI SLMEVCSEICLEE
Sbjct: 88  MGLCRDPTNSLQYSRIEKVDRIYDFLAGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 147

Query: 61  DRTSAMNISTTPSIDSTAFSVRFSTSGNDKYNGKPIPNGVGSYMVVPHEVR----NALPT 120
           DRTSAMNISTTPSIDS AF+ R STSGNDK+NGKPIP           + +    +  P 
Sbjct: 148 DRTSAMNISTTPSIDSAAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 207

Query: 121 INRTHASN---------VSESARPSQPPESQGNQIKHGPATLYVIVQS 150
            ++   SN         VSE   PSQPPESQGNQI HGP TL VIVQS
Sbjct: 208 GDKKRPSNDKQNTGRAYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 255

[Close]

BLAST of IVF0023593 vs. NCBI nr
Match: XP_031741782.1 (uncharacterized protein LOC116403961 [Cucumis sativus])

HSP 1 Score: 172 bits (437), Expect = 3.89e-51
Identity = 96/142 (67.61%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 1   MELCREL----------YSRIEEVDRIYDFLVGLNTKFDVVRGRILGQRPISSLMEVCSE 60
           M+LCREL          YSRIEE DRIYDFL GLN KFDVVRGRILGQRPI SLMEVCSE
Sbjct: 66  MDLCRELVWRDPTDGVQYSRIEENDRIYDFLAGLNPKFDVVRGRILGQRPIPSLMEVCSE 125

Query: 61  ICLEEDRTSAMNISTTPSIDSTAFSVRFSTSGNDKYNGKPIP------------NGVGSY 120
           I LEEDRTSAM IS TP+IDS AFS R S S +DK+NGKPIP            N VGSY
Sbjct: 126 IRLEEDRTSAMYISATPTIDSAAFSARSSNSSSDKHNGKPIPVCDHCKKNGIPKNNVGSY 185

[Close]

BLAST of IVF0023593 vs. NCBI nr
Match: TYK07795.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 3.46e-36
Identity = 84/152 (55.26%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 7   LYSRIEEVDRIY---------DFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEEDR 66
           LYS+ +   R+Y         DFL+ LN KFDVVRGRILGQR I SLMEVC EI L+EDR
Sbjct: 218 LYSKRQNFSRLYMLRKDRQDYDFLIDLNPKFDVVRGRILGQRSIPSLMEVCFEIHLKEDR 277

Query: 67  TSAMNISTTPSIDSTAFSVRFSTSGNDKYNGKPIPNGVGSYMVVPHEVRNALPTINRTHA 126
           TSA+NISTTP+IDS   S R ST+ NDK+NGKPIP         P++ +N       T  
Sbjct: 278 TSALNISTTPAIDSATSSARSSTNVNDKHNGKPIPV---CKKCPPNDKQN-------TWR 337

Query: 127 SNVSESARPSQPPESQGNQIKHGPATLYVIVQ 149
           + VSE   PSQPP+S GNQI H PATL  I Q
Sbjct: 338 AYVSEFVGPSQPPDSHGNQINHDPATLGAIFQ 359

[Close]

BLAST of IVF0023593 vs. NCBI nr
Match: KAA0050638.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 3.59e-36
Identity = 80/132 (60.61%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 18  YDFLVGLNTKFDVVRGRILGQRPISSLMEVCSEICLEEDRTSAMNISTTPSIDSTAFSVR 77
           YDFL+ LN KFDVVRGRILGQR I SLMEVC EI L+EDRTSA+NISTTP+IDS   S R
Sbjct: 174 YDFLIDLNPKFDVVRGRILGQRSIPSLMEVCFEIHLKEDRTSALNISTTPAIDSATSSAR 233

Query: 78  FSTSGNDKYNGKPIPNGVGSYMVVPHEVRNALPTINRTHASNVSESARPSQPPESQGNQI 137
            ST+ NDK+NGKPIP         P++ +N       T  + VSE   PSQPP+S GNQI
Sbjct: 234 SSTNVNDKHNGKPIPV---CKKCPPNDKQN-------TWRAYVSEFVGPSQPPDSHGNQI 293

Query: 138 KHGPATLYVIVQ 149
            H PATL  I Q
Sbjct: 294 NHDPATLGAIFQ 295

The following BLAST results are available for this feature:

BLAST of IVF0023593 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023593 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUT6	6.6e-45	82.54	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G0...	[more]
A0A5A7VGG4	4.0e-42	60.57	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00...	[more]
A0A5D3C8I9	7.9e-30	55.26	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G...	[more]
A0A5A7U5T5	1.3e-29	60.61	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0...	[more]
A0A5A7SRZ5	1.6e-27	65.45	Glutathione S-transferase DHAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0023593 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037521.1	1.06e-57	82.54	Beta-galactosidase [Cucumis melo var. makuwa] >TYK01996.1 Beta-galactosidase [Cu...	[more]
KAA0064801.1	1.17e-52	63.10	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
XP_031741782.1	3.89e-51	67.61	uncharacterized protein LOC116403961 [Cucumis sativus]	[more]
TYK07795.1	3.46e-36	55.26	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0050638.1	3.59e-36	60.61	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023593 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023593.1	IVF0023593.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0046483	heterocycle metabolic process
biological_process	GO:1901360	organic cyclic compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016740	transferase activity