IVF0016477 (gene) Melon (IVF77) v1

Overview
NameIVF0016477
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr09: 2464240 .. 2465086 (+)
RNA-Seq ExpressionIVF0016477
SyntenyIVF0016477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGTTCTCTTTCTCACTGTTCTTCATTGTTTTCTTCCTTCTCTCAGGTTTGTTGTTTGGTCTACAAGGTTATTGAGAATTATGCTTAATTAGATTTTCTAAATTTTCATATAATTGAATCTTTTAATTAATTTGTTTAAAATTTTTGGCTTTGATTATGGAAAATCTTTTAAAATGTAACCAACCAAAGCATAGAAACCAATAATAAATGAAAGCAGTTTTTGTAGGATCAATTTTCAAAATCAGAAATTATAATTTTCATGTGTTTTAATGTTCTCATATTTTTCACCATTCTAATATTTAAAAAGCTGAGTTCAACCAAACTTTACTAAATAATGTTAATTAGTTTATTTCTTAAAAATATATACTATTATAATAATTCAAATATAGTGTAATTAAAAGTATATGACTATGAGGTTACATGAGATATCAATATAACTCAACTAGTATTGTTAAACTTATATTATCAACTTTAAGGTTAAATTTTCAATTTTCTCGCTTACTATGTTGTTAAAAAGAGAATTCGGTCATAAAACTTTATTGAGATCGAATAATGAAATAGCGTATCAGCGTTGAAAAAATTAAGTAAATTTTATGAGACAAATATACATTTATGTAACCTATATATTAAATTATTGAATGTGTTATATGCAGCTGCATGGATGATGCCTGAAGGAGTGAATGCAACAAAATGTGAGGAGAAGTTGTATGATGGATGCTTACCTAATGACTGCAAACAAAAGTGCTTAGCCAAATATCCAAATTCATCATCTGAATGTGTTGCAGTTCCTCCAATTCCCTTTCACTATTCTTGTTATTGCTTCTATGATTGTGCTGCATAA

mRNA sequence

ATGGCAAAGTTCTCTTTCTCACTGTTCTTCATTGTTTTCTTCCTTCTCTCAGCTGCATGGATGATGCCTGAAGGAGTGAATGCAACAAAATGTGAGGAGAAGTTGTATGATGGATGCTTACCTAATGACTGCAAACAAAAGTGCTTAGCCAAATATCCAAATTCATCATCTGAATGTGTTGCAGTTCCTCCAATTCCCTTTCACTATTCTTGTTATTGCTTCTATGATTGTGCTGCATAA

Coding sequence (CDS)

ATGGCAAAGTTCTCTTTCTCACTGTTCTTCATTGTTTTCTTCCTTCTCTCAGCTGCATGGATGATGCCTGAAGGAGTGAATGCAACAAAATGTGAGGAGAAGTTGTATGATGGATGCTTACCTAATGACTGCAAACAAAAGTGCTTAGCCAAATATCCAAATTCATCATCTGAATGTGTTGCAGTTCCTCCAATTCCCTTTCACTATTCTTGTTATTGCTTCTATGATTGTGCTGCATAA

Protein sequence

MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYDGCLPNDCKQKCLAKYPNSSSECVAVPPIPFHYSCYCFYDCAA
Homology
BLAST of IVF0016477 vs. ExPASy TrEMBL
Match: A0A0A0KU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.7e-33
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYDGCLPNDCKQKCLAKYPNSSSECV 60
          MAKFS SLFFI FFLLSAAW+MP GV+ATKCE KLYDGCLP DC QKC  KYPNSSSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 AVPPIPFHYSCYCFYDCAA 80
          AVPPIPFHYSCYCFYDCAA
Sbjct: 61 AVPPIPFHYSCYCFYDCAA 79

BLAST of IVF0016477 vs. ExPASy TrEMBL
Match: A0A0A0KS76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.6e-19
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWM-MPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPN-SSS 60
          M++ S S FFIVF LLS AWM MP+  NA  C +KLYD GC+ ++CKQ+C AKYPN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVAVPPIPFHYSCYCFYDCA 79
          +C+++PPIPFH +C CFY+CA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

BLAST of IVF0016477 vs. ExPASy TrEMBL
Match: A0A6J1JQS7 (putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPNSSSEC 60
          MAKF   L F++  +LSAA MMPE   A+ C E+LY+ GC  + C+++C  KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VAVPPIPFHYSCYCFYDC 78
          V  P  P H +C CF+DC
Sbjct: 61 VPNPLHPPHIACLCFFDC 77

BLAST of IVF0016477 vs. ExPASy TrEMBL
Match: A0A6J1EAA9 (putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.7e-09
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPNSSSEC 60
          MAKF   L F++  +LS A MMPE   A+ C E+LY+ GC  + C+++C  KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VAVPPIPFHYSCYCFYDC 78
          V  P  P H +C CF+DC
Sbjct: 61 VPNPLHPPHVACLCFFDC 77

BLAST of IVF0016477 vs. ExPASy TrEMBL
Match: A0A3N7EI84 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G180750 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-04
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLY-DGCLPNDCKQKCLAKYPN-SSSE 60
          MA+ SF+ FF +F +LSAA + P    A +C + LY  GC   DC  KC  K+ +    +
Sbjct: 1  MARISFTRFFTLFLVLSAALVTPHVNGAKRCLDILYKSGCNLEDCGAKCYKKHNSIHGGQ 60

Query: 61 CVAVPPIPFHYSCYCFYDC 78
          C+A P +   YSC C Y+C
Sbjct: 61 CIANPTMT-DYSCVCAYNC 78

BLAST of IVF0016477 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 147 bits (371), Expect = 2.54e-44
Identity = 69/79 (87.34%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYDGCLPNDCKQKCLAKYPNSSSECV 60
          MAKFS SLFFI FFLLSAAW+MP GV+ATKCE KLYDGCLP DC QKC  KYPNSSSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 AVPPIPFHYSCYCFYDCAA 79
          AVPPIPFHYSCYCFYDCAA
Sbjct: 61 AVPPIPFHYSCYCFYDCAA 79

BLAST of IVF0016477 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 100 bits (249), Expect = 1.09e-25
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWM-MPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPN-SSS 60
          M++ S S FFIVF LLS AWM MP+  NA  C +KLYD GC+ ++CKQ+C AKYPN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVAVPPIPFHYSCYCFYDCA 78
          +C+++PPIPFH +C CFY+CA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

BLAST of IVF0016477 vs. NCBI nr
Match: XP_022990690.1 (putative defensin-like protein 129 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 2.28e-13
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPNSSSEC 60
          MAKF   L F++  +LSAA MMPE   A+ C E+LY+ GC  + C+++C  KY  S+ EC
Sbjct: 1  MAKFCCPLLFLLL-VLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VAVPPIPFHYSCYCFYDC 77
          V  P  P H +C CF+DC
Sbjct: 61 VPNPLHPPHIACLCFFDC 77

BLAST of IVF0016477 vs. NCBI nr
Match: XP_022923678.1 (putative defensin-like protein 129 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 9.26e-13
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPNSSSEC 60
          MAKF   L F++  +LS A MMPE   A+ C E+LY+ GC  + C+++C  KY  S+ EC
Sbjct: 1  MAKFCCPLLFLLL-VLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VAVPPIPFHYSCYCFYDC 77
          V  P  P H +C CF+DC
Sbjct: 61 VPNPLHPPHVACLCFFDC 77

BLAST of IVF0016477 vs. NCBI nr
Match: XP_012090834.1 (defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 58.5 bits (140), Expect = 3.97e-09
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 1  MAKFSFSLFFIVFFLLSAAWMMPEGVNATKCEEKLYD-GCLPNDCKQKCLAKYPNSSSEC 60
          MA  SF+ FFI+F ++S + M+P+     KC+E L++ GC+  DCK++C  K+  +   C
Sbjct: 2  MANLSFNNFFILFLIISVSSMVPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVC 61

Query: 61 VAVPPIPFHYSCYCFYDC 77
          +        YSCYCF+ C
Sbjct: 62 IP-NQAKEDYSCYCFWTC 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU454.7e-3387.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1[more]
A0A0A0KS766.6e-1961.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1[more]
A0A6J1JQS71.6e-0947.44putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 P... [more]
A0A6J1EAA94.7e-0946.15putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316... [more]
A0A3N7EI842.7e-0440.51Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G180750 PE=3 ... [more]
Match NameE-valueIdentityDescription
KGN52439.12.54e-4487.34hypothetical protein Csa_009048 [Cucumis sativus][more]
KGN52438.11.09e-2561.73hypothetical protein Csa_008032 [Cucumis sativus][more]
XP_022990690.12.28e-1347.44putative defensin-like protein 129 [Cucurbita maxima][more]
XP_022923678.19.26e-1346.15putative defensin-like protein 129 [Cucurbita moschata][more]
XP_012090834.13.97e-0938.46defensin-like protein 156 [Jatropha curcas][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 29..77
e-value: 1.7E-5
score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016477.2IVF0016477.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0031640 killing of cells of other organism