CsaV3_3G021630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021630
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 18707819 .. 18707993 (-)
RNA-Seq ExpressionCsaV3_3G021630
SyntenyCsaV3_3G021630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

mRNA sequence

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

Coding sequence (CDS)

ATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCG

Protein sequence

MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPVX
Homology
BLAST of CsaV3_3G021630 vs. NCBI nr
Match: KAE8650629.1 (hypothetical protein Csa_010360, partial [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.8e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV 59
          MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV
Sbjct: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV 58

BLAST of CsaV3_3G021630 vs. NCBI nr
Match: KAE8653003.1 (hypothetical protein Csa_004561, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 40/60 (66.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSG--FLLPPSQGAPYHGASGYRRIPV 59
          MWDPQQSVQMQGGG   G   F       V     G  FLLPPSQGAPYHGASGYRRIPV
Sbjct: 1  MWDPQQSVQMQGGGPTLGFLAFAV---AAVVEWPVGLWFLLPPSQGAPYHGASGYRRIPV 57

BLAST of CsaV3_3G021630 vs. NCBI nr
Match: KAG8373781.1 (hypothetical protein BUALT_Bualt11G0060800 [Buddleja alternifolia])

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-07
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1  MWDPQQSVQMQGGGADPGVFGFRCGGGGGVAGGSSGFLLPPSQGAPYHGASGYRRIPV 59
          +WD +Q +Q+QGGGA  G  G R GG GGVAGG S  LLPP +G PYHG+S  RR+ +
Sbjct: 4  VWDEEQPMQVQGGGAHAGFRGVRGGGVGGVAGGGSRLLLPPHEGPPYHGSSRRRRLSI 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650629.12.8e-24100.00hypothetical protein Csa_010360, partial [Cucumis sativus][more]
KAE8653003.12.1e-0866.67hypothetical protein Csa_004561, partial [Cucumis sativus][more]
KAG8373781.12.3e-0756.90hypothetical protein BUALT_Bualt11G0060800 [Buddleja alternifolia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021630.1CsaV3_3G021630.1mRNA