CsaV3_3G020230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 16220447 .. 16220615 (-)
RNA-Seq ExpressionCsaV3_3G020230
SyntenyCsaV3_3G020230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCGTCGTCATTCACGACCACCTCGAAGAGCCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTG

mRNA sequence

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCGTCGTCATTCACGACCACCTCGAAGAGCCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTG

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCGTCGTCATTCACGACCACCTCGAAGAGCCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTG

Protein sequence

MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGX
Homology
BLAST of CsaV3_3G020230 vs. NCBI nr
Match: KAE8650564.1 (hypothetical protein Csa_011065, partial [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG 57
          MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG 56

BLAST of CsaV3_3G020230 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-09
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 57
          MESSSS L+KNN DNAKAPRL RL++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRL-RLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

BLAST of CsaV3_3G020230 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.2e-09
Identity = 47/65 (72.31%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1  MESSSSCLQK--NNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKK 57
          MESSSS LQK  NN  NAKAPRL RLT+NA        RHSRPPRR R SKIN APPPKK
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRL-RLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKK 60

BLAST of CsaV3_3G020230 vs. ExPASy TrEMBL
Match: A0A0A0L7D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG 57
          MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG 56

BLAST of CsaV3_3G020230 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 57
          MESSSS L+KNN DNAKAPRL RL++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRL-RLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

BLAST of CsaV3_3G020230 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 47/65 (72.31%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1  MESSSSCLQK--NNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKK 57
          MESSSS LQK  NN  NAKAPRL RLT+NA        RHSRPPRR R SKIN APPPKK
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRL-RLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKK 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650564.15.2e-20100.00hypothetical protein Csa_011065, partial [Cucumis sativus][more]
KAE8646590.13.2e-0971.43hypothetical protein Csa_005634, partial [Cucumis sativus][more]
KAA0048493.19.2e-0972.31hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7D22.5e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1[more]
A0A0A0KAN31.5e-0971.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1[more]
A0A5D3DY744.5e-0972.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020230.1CsaV3_3G020230.1mRNA