CsaV3_1G010500 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G010500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	p55
Location	chr1: 6537904 .. 6539349 (-)
RNA-Seq Expression	CsaV3_1G010500
Synteny	CsaV3_1G010500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTTACTGTAATTGAATCAATATGAGTTATAATGACCAACAAAGTATATCAGACAGTATTTATAACTAAGAGGTAAGAGGTTTATAACTAACAGGTTTGCGATTTGAATCTTTCTTTCCTATGGTTGTTGTACCAAGTGGAAAATATACTTATTTTGGTGAGTGTGCAATAAAAAATCGGGAAAATGACTACGTTTGATAGTTGACTAGAAGGGATGTTGACCATTATTGTAGATCTAGATCAGTACACATTGTAAGGTGGTGGTGGTATTGTTTTAACTTTCTATCTATATATGTGAGCTTTGAAAAGTTGATTATTAGGCCTACAAACACAACACAACACCATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAAACAGTCCGCCAAGTAGTCAACCTTAATCCTCCAACAAGAAACTCTCCAATTCTCTAATTATCAGAATATTATTGTTACTATTTTACTTTTCTTTCTTCTTTTTTGTAATAATGTTATGTTTTATTAGATCCACATCTCGTGCTGTCTTAACACTTTTCCTTTTGTTCAAATAAAATTATTATTATTATTTTAGCAGAAAAAGTATATATTATGAAAACCATTTTATTGATGATTATGATATCAGTAGTAAAAAATTGGACTTTAATGATGGTTTAACCAACATTAAAGATCTTTAATGTTGATTGGTTGTATTATAAAATTCTTTTAATGTCGGTTTAATCTGACATCTTTGATAGTGTTTTTTTTAATTAGGATACGACTTGGATCAGTAGGTGCACCCAAGCATCCCTACTAGATGGCCACCCTTTTAGCACCCTTATTATCTTCCATCAAAATTTCATTCAATGATGCACAAGGTCATGATGATCAAAATAAAGGCATTTAGTGTCGGTTGGGTTTGATGTAGTTTTAAAACTGACATTAAAAATCCTCAATAATGTCAGTTTAAAAGTGACATTAAAGCCTTGTTTTTG

mRNA sequence

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Coding sequence (CDS)

ATGGGGGGTGAGTTAAACCTTGCTCATGGGATCTTTAATCCCCCCTCATCACCCAGTAAAAAAAACACACCCAAATTCCCTGGAAGGTCGTCCGTTGAGCCACAGACACCGGATCCAGTTCATGGTAAGAAGAGGCCGGCGCCTGTTAGCCCCAACGACGACTTCCAACATGATCGTCCCCCAACTCAAAAGCGAAAAACCGATAACGCAGAGGAGGGTTCAAGCTCGGACGTGCCAATGAAAGATCTGATAGAGAAAGTTGAAGACATGGTTAAGATGCTGAAAAGGGTGGGCCGGAAAAAGGATAAATTGGTGAGTGATCCTTTGTTGGCTTGCTTTGTGTCTGCCCAGGCTCTGCTTACGGCTTGCACTGCTGAGCTTATTTCTAGATCTACTAGAAAAGCAAAGCCGCTAGTTCACCAGCACAGTGATCTCTCTATTAATTATGGTTCTACTACTACTGCTGCTGGTGGAAGTGGAGAGACGAAGAAAATTAAAAAAGTATAA

Protein sequence

MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV*

Homology

[Close]

BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 7.3e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]

BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 128/176 (72.73%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MGGELN--LAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHD 60
           MGGE N  + H IFNPP SP +KN PK    SSVEP TPD V GKKRPA VSPND  +HD
Sbjct: 1   MGGEFNHVIHHAIFNPPLSPGRKNAPKVTESSSVEPHTPDAVLGKKRPASVSPNDVSEHD 60

Query: 61  RPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQA 120
            PPTQK KTDNAE+ SSS VPMKDLI KVEDM+KMLKRV RK DKLVSDPLLACFVSAQ 
Sbjct: 61  HPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQT 120

Query: 121 LLTACTAELISRSTRKAK-PLVHQHSDLSINYGSTTT------AAGGSGETKKIKK 168
           LL ACTAEL+S+ST K K PLVHQHSD SINYGSTTT      A GGSGE +K KK
Sbjct: 121 LLMACTAELLSKSTGKKKPPLVHQHSDSSINYGSTTTADPDAAAPGGSGE-RKFKK 175

[Close]

BLAST of CsaV3_1G010500 vs. NCBI nr
Match: XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-17
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]

BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KAA0056835.1 (p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-17
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 186 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 245

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 246 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 305

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 306 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 341

[Close]

BLAST of CsaV3_1G010500 vs. NCBI nr
Match: KGN64500.1 (hypothetical protein Csa_014086 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-08
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 71  EEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 130
           E  SS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 131 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

[Close]

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL
Match: A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.5e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60
           MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP
Sbjct: 1   MGGELNLAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHDRP 60

Query: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120
           PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL
Sbjct: 61  PTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALL 120

Query: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 169
           TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV
Sbjct: 121 TACTAELISRSTRKAKPLVHQHSDLSINYGSTTTAAGGSGETKKIKKV 168

[Close]

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.9e-54
Identity = 128/176 (72.73%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MGGELN--LAHGIFNPPSSPSKKNTPKFPGRSSVEPQTPDPVHGKKRPAPVSPNDDFQHD 60
           MGGE N  + H IFNPP SP +KN PK    SSVEP TPD V GKKRPA VSPND  +HD
Sbjct: 1   MGGEFNHVIHHAIFNPPLSPGRKNAPKVTESSSVEPHTPDAVLGKKRPASVSPNDVSEHD 60

Query: 61  RPPTQKRKTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQA 120
            PPTQK KTDNAE+ SSS VPMKDLI KVEDM+KMLKRV RK DKLVSDPLLACFVSAQ 
Sbjct: 61  HPPTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQT 120

Query: 121 LLTACTAELISRSTRKAK-PLVHQHSDLSINYGSTTT------AAGGSGETKKIKK 168
           LL ACTAEL+S+ST K K PLVHQHSD SINYGSTTT      A GGSGE +K KK
Sbjct: 121 LLMACTAELLSKSTGKKKPPLVHQHSDSSINYGSTTTADPDAAAPGGSGE-RKFKK 175

[Close]

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL
Match: A0A1S3B2P2 (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 197 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 256

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 257 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 316

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 317 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 352

[Close]

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL
Match: A0A5A7UTH3 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 73/161 (45.34%), Postives = 93/161 (57.76%), Query Frame = 0


Query: 7   LAHGIFNPPSSPSKKNTPKFPGRS-SVEPQTPDPVHGKKRPAPVSPNDDFQHDRPPTQKR 66
           L+    N PSSPSK +       +  V P TP+   GKK     S ++  +  R    K 
Sbjct: 186 LSASTVNEPSSPSKLSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKA 245

Query: 67  KTDNAEEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTA 126
           +TD    GSS  VP+ DLI ++++MV MLK  GR    LV+ PLL CFVSAQ LL AC  
Sbjct: 246 QTDQ-NSGSSLTVPLDDLIARMKEMVNMLKSEGR----LVNSPLLGCFVSAQTLLMACAT 305

Query: 127 ELISRSTRKAKPLVHQHSDLSINYGSTT---TAAGGSGETK 164
           EL+S S  K+K L HQ S++S+NY STT   TAA G+GE K
Sbjct: 306 ELLSISIGKSKALHHQGSEISVNYSSTTTNDTAADGNGEKK 341

[Close]

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL
Match: A0A0A0LRJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 71  EEGSSSDVPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 130
           E  SS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103

Query: 131 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 168
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 136

The following BLAST results are available for this feature:

BLAST of CsaV3_1G010500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64496.1	7.3e-86	100.00	hypothetical protein Csa_013860 [Cucumis sativus]	[more]
KAA0056836.1	1.6e-53	72.73	p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa]	[more]
XP_008440827.1	4.2e-17	45.34	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00...	[more]
KAA0056835.1	4.2e-17	45.34	p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa]	[more]
KGN64500.1	6.1e-08	47.96	hypothetical protein Csa_014086 [Cucumis sativus]	[more]

BLAST of CsaV3_1G010500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX14	3.5e-86	100.00	p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1	[more]
A0A5D3BJN2	7.9e-54	72.73	p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1	[more]
A0A1S3B2P2	2.0e-17	45.34	uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UTH3	2.0e-17	45.34	p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1	[more]
A0A0A0LRJ2	2.9e-08	47.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1	[more]

BLAST of CsaV3_1G010500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G010500.1	CsaV3_1G010500.1	mRNA