CsGy6G030765 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G030765
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionProtein pleiotropic regulatory locus 1
LocationGy14Chr6: 28817941 .. 28818165 (+)
RNA-Seq ExpressionCsGy6G030765
SyntenyCsGy6G030765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGAGTCAAGTGGAGGTGACAATGGTAGTTTATGGTTCTGGGATTGGAAGACTGCTTATAACTTTCAGCAATCACAAACAATTGCTCAACCTAGCTCGTTGGATAGTGAAGCTGGGATTTATGCTCTCTCCTATGACATAGCTGGTTCGAGGCTTGTAACTTGTGAAGCCGATAAAACTATTAGATGTGGAGAGAAGATGAAAGTGCTACCCCTATAA

mRNA sequence

ATGAAGAACGAGTCAAGTGGAGGTGACAATGGTAGTTTATGGTTCTGGGATTGGAAGACTGCTTATAACTTTCAGCAATCACAAACAATTGCTCAACCTAGCTCGTTGGATAGTGAAGCTGGGATTTATGCTCTCTCCTATGACATAGCTGGTTCGAGGCTTGTAACTTGTGAAGCCGATAAAACTATTAGATGTGGAGAGAAGATGAAAGTGCTACCCCTATAA

Coding sequence (CDS)

ATGAAGAACGAGTCAAGTGGAGGTGACAATGGTAGTTTATGGTTCTGGGATTGGAAGACTGCTTATAACTTTCAGCAATCACAAACAATTGCTCAACCTAGCTCGTTGGATAGTGAAGCTGGGATTTATGCTCTCTCCTATGACATAGCTGGTTCGAGGCTTGTAACTTGTGAAGCCGATAAAACTATTAGATGTGGAGAGAAGATGAAAGTGCTACCCCTATAA

Protein sequence

MKNESSGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRCGEKMKVLPL*
Homology
BLAST of CsGy6G030765 vs. ExPASy Swiss-Prot
Match: Q42384 (Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-21
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           +GGDNGS+WFWDWK+ ++FQQS+TI QP SL+SEAGIYA  YD  GSRLVTCEADKTI+
Sbjct: 402 TGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIK 460

BLAST of CsGy6G030765 vs. ExPASy Swiss-Prot
Match: Q39190 (Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           +GGD G LWFWDWK+ +NFQ+++TI QP SL+SEAGIYA  YD  GSRLVTCE DKTI+
Sbjct: 395 TGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIK 453

BLAST of CsGy6G030765 vs. ExPASy Swiss-Prot
Match: O13615 (Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp5 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-16
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           SG DNGS+ FWDWK+ + +Q+ Q++ QP SLDSEAGI+A S+D  G RL+TCEADK+++
Sbjct: 388 SGADNGSMCFWDWKSGHKYQELQSVVQPGSLDSEAGIFASSFDKTGLRLITCEADKSVK 446

BLAST of CsGy6G030765 vs. ExPASy Swiss-Prot
Match: Q4WT34 (Pre-mRNA-splicing factor prp46 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=prp46 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-16
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           SGGDNGS+ FWDWKT Y FQ   T+AQP SLD+EAGI + ++D  G RL+T EADKTI+
Sbjct: 369 SGGDNGSMCFWDWKTGYKFQSIDTMAQPGSLDAEAGIMSATFDRTGLRLITGEADKTIK 427

BLAST of CsGy6G030765 vs. ExPASy Swiss-Prot
Match: Q5BE22 (Pre-mRNA-splicing factor prp46 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp46 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           SGGDNGS+ FWDWKT Y +Q   T AQP SL++EAGI   ++D  G RL+T EADKTI+
Sbjct: 368 SGGDNGSMSFWDWKTGYRYQTIDTTAQPGSLEAEAGIMTSTFDRTGLRLITGEADKTIK 426

BLAST of CsGy6G030765 vs. NCBI nr
Match: KGN48861.1 (hypothetical protein Csa_003772 [Cucumis sativus])

HSP 1 Score: 154 bits (389), Expect = 3.33e-47
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0

Query: 1  MKNESSGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEAD 60
          MKNESSGGDNG LWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEAD
Sbjct: 1  MKNESSGGDNGILWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEAD 60

Query: 61 KTIRCGEKMKVLPL 74
          KTIRCGEKMKVLPL
Sbjct: 61 KTIRCGEKMKVLPL 74

BLAST of CsGy6G030765 vs. NCBI nr
Match: KAA0025721.1 (protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa] >TYK12596.1 protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 2.05e-31
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 6  SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRC 65
          SG DNGSLWFWDW TAYNFQ+SQT AQP SLDSEAGIYALSY+I GSRLVTCEADKT RC
Sbjct: 32 SGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNRC 91

BLAST of CsGy6G030765 vs. NCBI nr
Match: XP_023901316.1 (protein pleiotropic regulatory locus 1-like [Quercus suber])

HSP 1 Score: 112 bits (279), Expect = 6.08e-30
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 5  SSGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 64
          ++GGDNGS+WFWDWK+ +NFQQSQTI QP SLDSEAGIYALSYD+ GSRL+TCEADKTI+
Sbjct: 27 ATGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDLTGSRLITCEADKTIK 86

BLAST of CsGy6G030765 vs. NCBI nr
Match: PKI39628.1 (hypothetical protein CRG98_039955 [Punica granatum])

HSP 1 Score: 110 bits (276), Expect = 1.46e-29
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 5  SSGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 64
          ++GGDNGSLWFWDWK+ +NFQQ+QTI QP SLDSEAGIYALSYD+ G+RLVTCEADKTI+
Sbjct: 21 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDLTGTRLVTCEADKTIK 80

BLAST of CsGy6G030765 vs. NCBI nr
Match: PSS18227.1 (Protein pleiotropic regulatory locus 1 like [Actinidia chinensis var. chinensis])

HSP 1 Score: 110 bits (276), Expect = 5.16e-29
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 64
           +GGDNGSLWFWDWK+ +NFQQ QTI QP SLDSEAGIYA+SYD+ GSRLVTCEADKTI+
Sbjct: 66  TGGDNGSLWFWDWKSGHNFQQDQTIVQPGSLDSEAGIYAISYDVTGSRLVTCEADKTIK 124

BLAST of CsGy6G030765 vs. ExPASy TrEMBL
Match: A0A0A0KM95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504425 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 1.61e-47
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0

Query: 1  MKNESSGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEAD 60
          MKNESSGGDNG LWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEAD
Sbjct: 1  MKNESSGGDNGILWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEAD 60

Query: 61 KTIRCGEKMKVLPL 74
          KTIRCGEKMKVLPL
Sbjct: 61 KTIRCGEKMKVLPL 74

BLAST of CsGy6G030765 vs. ExPASy TrEMBL
Match: A0A5D3CQ93 (Protein pleiotropic regulatory locus 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001800 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 9.93e-32
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 6  SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIRC 65
          SG DNGSLWFWDW TAYNFQ+SQT AQP SLDSEAGIYALSY+I GSRLVTCEADKT RC
Sbjct: 32 SGVDNGSLWFWDWNTAYNFQRSQTTAQPGSLDSEAGIYALSYNITGSRLVTCEADKTNRC 91

BLAST of CsGy6G030765 vs. ExPASy TrEMBL
Match: A0A2I0I6M0 (WD_REPEATS_REGION domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_039955 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 7.07e-30
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 5  SSGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 64
          ++GGDNGSLWFWDWK+ +NFQQ+QTI QP SLDSEAGIYALSYD+ G+RLVTCEADKTI+
Sbjct: 21 ATGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDLTGTRLVTCEADKTIK 80

BLAST of CsGy6G030765 vs. ExPASy TrEMBL
Match: A0A2P2LLU5 (WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 2.05e-29
Identity = 48/59 (81.36%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 64
           +GGDNGSLWFWDWK+ +NFQQ+QTI QP SLDSEAGIYALSYD++GSRL+TCEADKTI+
Sbjct: 97  TGGDNGSLWFWDWKSGHNFQQAQTIVQPGSLDSEAGIYALSYDVSGSRLITCEADKTIK 155

BLAST of CsGy6G030765 vs. ExPASy TrEMBL
Match: A0A2R6R0R7 (Protein pleiotropic regulatory locus 1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc04409 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.50e-29
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 64
           +GGDNGSLWFWDWK+ +NFQQ QTI QP SLDSEAGIYA+SYD+ GSRLVTCEADKTI+
Sbjct: 66  TGGDNGSLWFWDWKSGHNFQQDQTIVQPGSLDSEAGIYAISYDVTGSRLVTCEADKTIK 124

BLAST of CsGy6G030765 vs. TAIR 10
Match: AT4G15900.1 (pleiotropic regulatory locus 1 )

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-22
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           +GGDNGS+WFWDWK+ ++FQQS+TI QP SL+SEAGIYA  YD  GSRLVTCEADKTI+
Sbjct: 402 TGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIK 460

BLAST of CsGy6G030765 vs. TAIR 10
Match: AT3G16650.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 8.6e-21
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 6   SGGDNGSLWFWDWKTAYNFQQSQTIAQPSSLDSEAGIYALSYDIAGSRLVTCEADKTIR 65
           +GGD G LWFWDWK+ +NFQ+++TI QP SL+SEAGIYA  YD  GSRLVTCE DKTI+
Sbjct: 395 TGGDKGGLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIK 453

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q423842.9e-2174.58Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 P... [more]
Q391901.2e-1969.49Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana OX=3702 GN=PRL2 PE=2 ... [more]
O136152.8e-1659.32Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
Q4WT344.8e-1664.41Pre-mRNA-splicing factor prp46 OS=Neosartorya fumigata (strain ATCC MYA-4609 / A... [more]
Q5BE221.5e-1461.02Pre-mRNA-splicing factor prp46 OS=Emericella nidulans (strain FGSC A4 / ATCC 381... [more]
Match NameE-valueIdentityDescription
KGN48861.13.33e-4798.65hypothetical protein Csa_003772 [Cucumis sativus][more]
KAA0025721.12.05e-3186.89protein pleiotropic regulatory locus 1 [Cucumis melo var. makuwa] >TYK12596.1 pr... [more]
XP_023901316.16.08e-3080.00protein pleiotropic regulatory locus 1-like [Quercus suber][more]
PKI39628.11.46e-2980.00hypothetical protein CRG98_039955 [Punica granatum][more]
PSS18227.15.16e-2981.36Protein pleiotropic regulatory locus 1 like [Actinidia chinensis var. chinensis][more]
Match NameE-valueIdentityDescription
A0A0A0KM951.61e-4798.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504425 PE=4 SV=1[more]
A0A5D3CQ939.93e-3286.89Protein pleiotropic regulatory locus 1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A2I0I6M07.07e-3080.00WD_REPEATS_REGION domain-containing protein OS=Punica granatum OX=22663 GN=CRG98... [more]
A0A2P2LLU52.05e-2981.36WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=... [more]
A0A2R6R0R72.50e-2981.36Protein pleiotropic regulatory locus 1 like OS=Actinidia chinensis var. chinensi... [more]
Match NameE-valueIdentityDescription
AT4G15900.12.0e-2274.58pleiotropic regulatory locus 1 [more]
AT3G16650.18.6e-2169.49Transducin/WD40 repeat-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..71
e-value: 5.0E-11
score: 44.1
NoneNo IPR availablePANTHERPTHR19923:SF1BNAA01G27690D PROTEINcoord: 6..66
NoneNo IPR availablePANTHERPTHR19923WD40 REPEAT PROTEINPRL1/PRL2-RELATEDcoord: 6..66
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 7..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G030765.1CsGy6G030765.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0000974 Prp19 complex
molecular_function GO:0005515 protein binding