CsGy6G019860 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G019860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	photosystem II 22 kDa protein, chloroplastic
Location	Gy14Chr6: 20468882 .. 20470725 (+)
RNA-Seq Expression	CsGy6G019860
Synteny	CsGy6G019860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCAATTGAGAATCACATAAATTAAAGGGCGACGTGTCACTCTATCGGCCGATCCTCAAACTCTTCCACCAAATCCACACGCACAATCTCCTCTCTTCCCGTCCACCATACACTTTCAAAATCCCACTCTTCTTCTTCTTCATAAAAACCCATATATCCATGAATTAATTACCTTAAGTTTTTCCTTTTCAATAAACAAACAGCTCTGCTAAAAACACCTTTCTTCCACCATTTCCATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGTGTGCGTCGGCCATGGTGTGTGTCTCAAAAGAGAATTGAGCCTTAGACCTAACTACACCCAATTCACTCGTCTCTTTTTCAACCCTCTGCCGTCCCACTCTGTTTCTTTACCGCCGCGTGGCTTCACCACTCTTGCTGTGTTTAAGTCTAGAACTAAAGCCCCGCCCAAGAAGGTAATTAATTGTTGTTACTATTTTAAATAAATAAATGGAATTCGAATTGATGGATTTTGATATTTTTTTTTAAAAAAATTAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGATGGAATTTTTGGGACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGTAAGATCTATGGATCTATATGTTTATTATTATATGTTTATTTATTTTTCGTAAAATTTGATAGCCATTTTAACACATTTGTTGGATAATGTATAAAACTACGTTTCAAAATCTTTACTACTAAAATCAACAAAACTACTATAAAGAATTAGAGTGTTGGAGGACTGAATTTTGTTAGTTTTGGAGTGAACAAAGAAGCAAACAAAATGGATTGGTTTTGAAAAAGAAGAAATCCAAACCAAGGGTTGAATAAAGAATAAACCCATGTCCATGGGTTAGAATAAGCTTAATTGGTGGATTTTGATGTTTGTGTAAAATTTGCAGGCATCAATTCTAGGAGAAGCGATCACCGGAAAGGGAATTCTAGCACAACTCAACTTAGAAACTGGAATTCCCATTTACGAGGCCGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCTGAACCCGCCACTGGATTGGAACGCGCCGTCATTCCTCCCGGGAAGAGCTTCAGATCCGCCTTAGGTCTCAAAGAAGGAGGTAATTTTAATTACATCACAAAAAATCAAATCAACTTACTCCATTATGCTCTTCAATTAAATCTAATTTATGACGCCTTTGTTCTTTTGAAGGTCCGTTGTTCGGATTCACCAAGGCCAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGTTGATCGGAGAAATTATTACTGGAAAGGGAGCTTTGGCGCAATTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTATTGAATGTTGTGTTCTTCTTCATTGCGGCAGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAAGAAGATGATGAATGAAGAGATGGATTGTGCTTTAATTTTTTGTCTGTACATGATGAAATTAGCAAATCCGTATGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGGGTTGTTGTGCTATTAGAACATTTTTATTCTGCTTGAGCACTGGAATCAACGAAATGGAAGTAACAAACTTTGGGTAGTTAAGTTTAGGCAAACATCAGTCTTTTTTGCTTCTTTCATTTTACTTTTCTCATCTTCCCACCTTTAGTTTGAGTGGAGAAAATTAATTAATAAATACATTAAGCAAAACATATTACAAG

mRNA sequence

CCACCAATTGAGAATCACATAAATTAAAGGGCGACGTGTCACTCTATCGGCCGATCCTCAAACTCTTCCACCAAATCCACACGCACAATCTCCTCTCTTCCCGTCCACCATACACTTTCAAAATCCCACTCTTCTTCTTCTTCATAAAAACCCATATATCCATGAATTAATTACCTTAAGTTTTTCCTTTTCAATAAACAAACAGCTCTGCTAAAAACACCTTTCTTCCACCATTTCCATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGTGTGCGTCGGCCATGGTGTGTGTCTCAAAAGAGAATTGAGCCTTAGACCTAACTACACCCAATTCACTCGTCTCTTTTTCAACCCTCTGCCGTCCCACTCTGTTTCTTTACCGCCGCGTGGCTTCACCACTCTTGCTGTGTTTAAGTCTAGAACTAAAGCCCCGCCCAAGAAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGATGGAATTTTTGGGACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCAATTCTAGGAGAAGCGATCACCGGAAAGGGAATTCTAGCACAACTCAACTTAGAAACTGGAATTCCCATTTACGAGGCCGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCTGAACCCGCCACTGGATTGGAACGCGCCGTCATTCCTCCCGGGAAGAGCTTCAGATCCGCCTTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACCAAGGCCAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGTTGATCGGAGAAATTATTACTGGAAAGGGAGCTTTGGCGCAATTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTATTGAATGTTGTGTTCTTCTTCATTGCGGCAGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAAGAAGATGATGAATGAAGAGATGGATTGTGCTTTAATTTTTTGTCTGTACATGATGAAATTAGCAAATCCGTATGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGGGTTGTTGTGCTATTAGAACATTTTTATTCTGCTTGAGCACTGGAATCAACGAAATGGAAGTAACAAACTTTGGGTAGTTAAGTTTAGGCAAACATCAGTCTTTTTTGCTTCTTTCATTTTACTTTTCTCATCTTCCCACCTTTAGTTTGAGTGGAGAAAATTAATTAATAAATACATTAAGCAAAACATATTACAAG

Coding sequence (CDS)

ATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGTGTGCGTCGGCCATGGTGTGTGTCTCAAAAGAGAATTGAGCCTTAGACCTAACTACACCCAATTCACTCGTCTCTTTTTCAACCCTCTGCCGTCCCACTCTGTTTCTTTACCGCCGCGTGGCTTCACCACTCTTGCTGTGTTTAAGTCTAGAACTAAAGCCCCGCCCAAGAAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGATGGAATTTTTGGGACTTCTGGTGGCATTGGTTTTACTAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCCATGATCGGCTTTGCTGCATCAATTCTAGGAGAAGCGATCACCGGAAAGGGAATTCTAGCACAACTCAACTTAGAAACTGGAATTCCCATTTACGAGGCCGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCTGAACCCGCCACTGGATTGGAACGCGCCGTCATTCCTCCCGGGAAGAGCTTCAGATCCGCCTTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACCAAGGCCAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGTTGATCGGAGAAATTATTACTGGAAAGGGAGCTTTGGCGCAATTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTATTGAATGTTGTGTTCTTCTTCATTGCGGCAGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAAGAAGATGATGAATGA

Protein sequence

MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE*

Homology

[Close]

BLAST of CsGy6G019860 vs. ExPASy Swiss-Prot
Match: Q02060 (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.9e-108
Identity = 210/278 (75.54%), Postives = 234/278 (84.17%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQF------TRLFFNPLPSHSVSLPPRGFT 60
           MA   +L+  GV   + + LKR   L+    +       + LFF+PLPS S S     F 
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSS-SSSSTVFK 60

Query: 61  TLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEA 120
           TLA+FKS+ KA PKKVEKPK KVEDG+FGTSGGIGFTK+NELFVGRVAMIGFAAS+LGE 
Sbjct: 61  TLALFKSKAKA-PKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+F+D  EP TGLE+AV
Sbjct: 121 ITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVD--EPTTGLEKAV 180

Query: 181 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK  RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 273
           GVPINEIEPLVLLNVVFFFIAA+NPGTGKF+TD+E+++
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEED 274

[Close]

BLAST of CsGy6G019860 vs. ExPASy Swiss-Prot
Match: Q9FPP4 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN=PSBS PE=2 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.1e-108
Identity = 211/277 (76.17%), Postives = 229/277 (82.67%), Query Frame = 0


Query: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLP----SHSVSLPPRGF--TTL 62
           AQTMLLT+   V   +  K  L  R      + LF   LP    S + +     F  TT+
Sbjct: 2   AQTMLLTANAKV--DLRSKESLVERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTV 61

Query: 63  AVFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEA 122
           A+FKS+ KAPPKKV  P  KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEA
Sbjct: 62  ALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 182
           ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP PATGLE+AV
Sbjct: 122 ITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAV 181

Query: 183 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ET
Sbjct: 182 IPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFET 241

Query: 243 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 272
           GVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 GVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of CsGy6G019860 vs. ExPASy Swiss-Prot
Match: P54773 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBS PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 6.6e-108
Identity = 211/277 (76.17%), Postives = 228/277 (82.31%), Query Frame = 0


Query: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLP----SHSVSLPPRGF--TTL 62
           AQTMLLT+   V   +  K  L  R      + LF   LP    S S +     F  TT+
Sbjct: 2   AQTMLLTANAKV--DLRSKESLVERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTV 61

Query: 63  AVFKSRTKAPPKKVEKP--KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEA 122
           A+FKS+ KAPPKKV  P  KQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEA
Sbjct: 62  ALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 182
           ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP P TGLE+AV
Sbjct: 122 ITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAV 181

Query: 183 IPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGKSF+SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ET
Sbjct: 182 IPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFET 241

Query: 243 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 272
           GVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEE+D
Sbjct: 242 GVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of CsGy6G019860 vs. ExPASy Swiss-Prot
Match: Q9XF91 (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBS PE=2 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 9.6e-107
Identity = 208/271 (76.75%), Postives = 228/271 (84.13%), Query Frame = 0


Query: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPR--GFTTLAVFK 62
           AQTMLLTSGV  GH +  K  L+      +   LF +   +  V+LP R   F  LA+FK
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA----QPKVHHLFLS--GNSPVALPSRRQSFVPLALFK 61

Query: 63  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 122
            +TKA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGI
Sbjct: 62  PKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGI 121

Query: 123 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 182
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+
Sbjct: 122 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKN 181

Query: 183 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 242
            RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +
Sbjct: 182 VRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQD 241

Query: 243 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 272
           IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 IEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of CsGy6G019860 vs. ExPASy Swiss-Prot
Match: Q9SMB4 (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBS PE=2 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 9.0e-105
Identity = 206/273 (75.46%), Postives = 225/273 (82.42%), Query Frame = 0


Query: 3   AQTMLLTSG--VCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPR-GFTTLAVF 62
           AQTMLLT+   V +     L   L  +P  + F        PS S S       TT+A+F
Sbjct: 2   AQTMLLTANAKVDLRSKESLVERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALF 61

Query: 63  KSRTKAPPKK-VEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGK 122
           KS+ KAP KK V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGK
Sbjct: 62  KSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGK 121

Query: 123 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPG 182
           GILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP P TGL++AVIPPG
Sbjct: 122 GILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPG 181

Query: 183 KSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPI 242
           K F+SALGL EGGPLF FTKANELFVGRLAQLG AFS+IGEIITGKGALAQLN ETGVPI
Sbjct: 182 KGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPI 241

Query: 243 NEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 272
           NEIEPL+L N+VFFF+AA+NPGTGKFVTDEE++
Sbjct: 242 NEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

[Close]

BLAST of CsGy6G019860 vs. NCBI nr
Match: XP_004150442.1 (photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hypothetical protein Csa_018297 [Cucumis sativus])

HSP 1 Score: 536 bits (1382), Expect = 3.67e-192
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60
           MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CsGy6G019860 vs. NCBI nr
Match: XP_008466710.1 (PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo] >KAA0059887.1 photosystem II 22 kDa protein [Cucumis melo var. makuwa] >TYK24837.1 photosystem II 22 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 524 bits (1349), Expect = 3.94e-187
Identity = 266/272 (97.79%), Postives = 268/272 (98.53%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60
           MAAQTMLLTSGVCVGHGVCLKRELSLRPN  QFTRLFFNPLP+HSVSLP RGFT LAVFK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CsGy6G019860 vs. NCBI nr
Match: XP_038885143.1 (photosystem II 22 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 511 bits (1315), Expect = 5.78e-182
Identity = 261/272 (95.96%), Postives = 266/272 (97.79%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60
           MAAQTMLLTSGVCVGHGV +KREL LRPN  QF+RLFFNPLPSHSVSLP RGFTTLAVFK
Sbjct: 1   MAAQTMLLTSGVCVGHGVGVKRELRLRPN-AQFSRLFFNPLPSHSVSLPARGFTTLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKV KPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVSKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK+
Sbjct: 121 LAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKN 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 271

[Close]

BLAST of CsGy6G019860 vs. NCBI nr
Match: XP_022952982.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_023545993.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7032798.1 Photosystem II 22 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476 bits (1224), Expect = 4.94e-168
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  QF+RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPN-AQFSRLFFNPLPSSSVSLPARGFRT 60

Query: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120

Query: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CsGy6G019860 vs. NCBI nr
Match: XP_022991058.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 473 bits (1216), Expect = 8.17e-167
Identity = 243/276 (88.04%), Postives = 255/276 (92.39%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  Q +RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPN-AQSSRLFFNPLPSSSVSLPARGFRT 60

Query: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120

Query: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CsGy6G019860 vs. ExPASy TrEMBL
Match: A0A0A0K7N4 (Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 536 bits (1382), Expect = 1.78e-192
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60
           MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CsGy6G019860 vs. ExPASy TrEMBL
Match: A0A5A7UZ08 (Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00970 PE=4 SV=1)

HSP 1 Score: 524 bits (1349), Expect = 1.91e-187
Identity = 266/272 (97.79%), Postives = 268/272 (98.53%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60
           MAAQTMLLTSGVCVGHGVCLKRELSLRPN  QFTRLFFNPLP+HSVSLP RGFT LAVFK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CsGy6G019860 vs. ExPASy TrEMBL
Match: A0A1S3CS23 (photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504056 PE=4 SV=1)

HSP 1 Score: 524 bits (1349), Expect = 1.91e-187
Identity = 266/272 (97.79%), Postives = 268/272 (98.53%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPRGFTTLAVFK 60
           MAAQTMLLTSGVCVGHGVCLKRELSLRPN  QFTRLFFNPLP+HSVSLP RGFT LAVFK
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFK 60

Query: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 120
           SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGEAITGKGI
Sbjct: 61  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGI 120

Query: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS
Sbjct: 121 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 180

Query: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240
           FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE
Sbjct: 181 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 240

Query: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
           IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE
Sbjct: 241 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272

[Close]

BLAST of CsGy6G019860 vs. ExPASy TrEMBL
Match: A0A6J1GLX6 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455493 PE=4 SV=1)

HSP 1 Score: 476 bits (1224), Expect = 2.39e-168
Identity = 244/276 (88.41%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  QF+RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPN-AQFSRLFFNPLPSSSVSLPARGFRT 60

Query: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120

Query: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CsGy6G019860 vs. ExPASy TrEMBL
Match: A0A6J1JV31 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111487764 PE=4 SV=1)

HSP 1 Score: 473 bits (1216), Expect = 3.96e-167
Identity = 243/276 (88.04%), Postives = 255/276 (92.39%), Query Frame = 0


Query: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  Q +RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPN-AQSSRLFFNPLPSSSVSLPARGFRT 60

Query: 61  LAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAI 120
           LA+FKS+ K P KKV KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE I
Sbjct: 61  LAIFKSKAKVPAKKVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGI 120

Query: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180
           TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI
Sbjct: 121 TGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVI 180

Query: 181 PPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240
           PPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 181 PPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 240

Query: 241 VPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271
           VPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 VPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CsGy6G019860 vs. TAIR 10
Match: AT1G44575.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 387.9 bits (995), Expect = 6.8e-108
Identity = 208/271 (76.75%), Postives = 228/271 (84.13%), Query Frame = 0


Query: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPR--GFTTLAVFK 62
           AQTMLLTSGV  GH +  K  L+      +   LF +   +  V+LP R   F  LA+FK
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA----QPKVHHLFLS--GNSPVALPSRRQSFVPLALFK 61

Query: 63  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 122
            +TKA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGI
Sbjct: 62  PKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGI 121

Query: 123 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 182
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+
Sbjct: 122 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKN 181

Query: 183 FRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINE 242
            RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PI +
Sbjct: 182 VRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQD 241

Query: 243 IEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 272
           IEPLVLLNV FFF AA+NPG GKF+TD+ ++
Sbjct: 242 IEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of CsGy6G019860 vs. TAIR 10
Match: AT1G44575.2 (Chlorophyll A-B binding family protein )

HSP 1 Score: 252.3 bits (643), Expect = 4.5e-67
Identity = 141/191 (73.82%), Postives = 154/191 (80.63%), Query Frame = 0


Query: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQFTRLFFNPLPSHSVSLPPR--GFTTLAVFK 62
           AQTMLLTSGV  GH +  K  L+      +   LF +   +  V+LP R   F  LA+FK
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA----QPKVHHLFLS--GNSPVALPSRRQSFVPLALFK 61

Query: 63  SRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGEAITGKGI 122
            +TKA PKKVEKPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAAS+LGEA+TGKGI
Sbjct: 62  PKTKAAPKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGI 121

Query: 123 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKS 182
           LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AVIPPGK+
Sbjct: 122 LAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAVIPPGKN 181

Query: 183 FRSALGLKEGG 192
            RSALGLKE G
Sbjct: 182 VRSALGLKEQG 184

The following BLAST results are available for this feature:

BLAST of CsGy6G019860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02060	3.9e-108	75.54	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSB...	[more]
Q9FPP4	5.1e-108	76.17	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN...	[more]
P54773	6.6e-108	76.17	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=...	[more]
Q9XF91	9.6e-107	76.75	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SMB4	9.0e-105	75.46	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSB...	[more]

BLAST of CsGy6G019860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150442.1	3.67e-192	100.00	photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hyp...	[more]
XP_008466710.1	3.94e-187	97.79	PREDICTED: photosystem II 22 kDa protein, chloroplastic [Cucumis melo] >KAA00598...	[more]
XP_038885143.1	5.78e-182	95.96	photosystem II 22 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_022952982.1	4.94e-168	88.41	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_02354...	[more]
XP_022991058.1	8.17e-167	88.04	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of CsGy6G019860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N4	1.78e-192	100.00	Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1	[more]
A0A5A7UZ08	1.91e-187	97.79	Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS23	1.91e-187	97.79	photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1GLX6	2.39e-168	88.41	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JV31	3.96e-167	88.04	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CsGy6G019860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44575.1	6.8e-108	76.75	Chlorophyll A-B binding family protein	[more]
AT1G44575.2	4.5e-67	73.82	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 132..242 e-value: 9.9E-7 score: 31.0 coord: 26..131 e-value: 2.8E-6 score: 29.5
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 86..216 e-value: 6.8E-9 score: 36.4
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 3..183
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 194..257
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 194..257
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 3..183
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 76..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G019860.1	CsGy6G019860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding