Cp4.1LG13g09740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG13g09740
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA pseudouridine synthase 5
Location	Cp4.1LG13: 7252047 .. 7259995 (-)
RNA-Seq Expression	Cp4.1LG13g09740
Synteny	Cp4.1LG13g09740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACCGAGTCGAGAGATTGTTGAAAGTTTTTTTTTCCCTCTTACTCTCCTCTTCAAGACAACGCTACTTCCAGTTCCCGCCCTTGATTCTGTACTGAATTCCTGCATTTCAATTATCATTGTTGTGTAAATTCGTTTCTTGATTTTTACATTCAAGATCAATCGCTATAATGCTTGGAAGATCCTTTCAAGTTATCGGAATTCCATGGCCCGATCTCAACGACGGATTATTCTACAACGATGTCGTTAAACCCTCCGACTCCGGTTCTCTTTCTTTCTGTTCAACTTCCGCTTTATGCAGAAGAAATTTCCATTTCGCGTTTCGTGATTTCTTCCTCTTTGCGTGATAATATGTCCAGGGATGTCTTTGATCGAGTTCTATTCTCGCAAATATAAGAGTTCGGCTCCACTGGAAGGGTAGGCGTCAAAGTCAGCCTAGATTATCGGATTATCTCGAGTTTGATATTTTTGAGGTTATTGCTAATTATTAATGAAACGTATTTTACATCAATTACTTTGCAGCTGGTTGCAGCGAATTCAGAACGAACAGGTACGGTGGTCTTTAATTTAGGTAATGAAAGCATTTGTGAGGTTGCATTGATGGACATTTTTTGGAACTTGTATGCGTGTGTATTTCATTGTATTTTTCTAATAAAAATATTTTGAAACAAAATCAATCTGGTAAGTGTAGATAACGATCGATGGTCAGGTTATCACAGATCCCGAAACAATTCTCAGGTTCTTCACCCTGGTTCCTTTACTCCAGATTTAATGGTATGTTCAAAAGTTTGTATCACAGCATTAGGTGTTTTCATATATTACAAAATCTGTAGGATTGGTTCTGAAGTAGTTTATCGTCGACTTCCGTGGAAAGAACCGGATACCCCTTATTTACTTGAGGTTCTATATGAAGACGATGAAATGGTAAATGCATTCTAGCTGGTTCATTCTTTTTTCTTGTAATCTGTGTTATTGTTTGCTTCCAGTTTTGATGAAGTTGAAACTACCAACTATTCTTCAGATTGCATTAAATAAACCGTCTGGCTTGCAAGTATTACCTGGCGGTGTCTTCCAGCAACGGACAGTTTTGACGCAGCTTCAATGGTGGTCAAGCAAGCAGAGTTCCTCCGTCTCAAAAGAGTTGCACCCTGTTCCTGTTCATCGCCTAGGAAGGGGGACTTCAGGTTAGATTACATAAACCCCGATGGCGAACGAGATTTCCATTTATATGCAGATGCTTTATTGCTATGTATTATCTTTGTTGGATATCTGATTACTTGTTTGCCTATAAGCCAATATCAAATGAAAATTGTTAAAATCTCAATATACCATTATATGCACAAGGCAGTAGCGATTTGTGATGAAATGAAACAATTATTGAGACTGCAGTGGAATGTTGAAGATTTGAAATTAGTCATGAGATTTAGGGTGCTTCTTTCAACTCTAGATGTCAGCAGTAGGAATTTATCTAGCACCCTAATTAGAGGATAGAAACATCATCAGTTCATTTACCAATGTTGTGAAGCCTTGAAGTTGTTTCTGTATTTCTTCCGTGGGAGTTCATATTGCCAAAATTAATGCCAACGAATGTCACTGCTTTTCTACTCCGTTTCATAAATATGCACCCAAACTCAATACACTAATCCTGCGATTTCCTTTTACAAGATACCATTTACCTTTGGCTCTGAACTATTGTCAACTTTTTGGTACAAGGATTATTTTTCTTCCTTTTCGTGATACTCTAATCAACTATGTAGGAAATGTATTTCAATTTTGTCTTTAAATGCTTCACTAGTCCCTCTGCTTAATTCTATTTACTCATCTTTGTACCTCAGGTATTTTATTATGTGCAAAAACGAGGCTCGCTAGAACACAGTTTGCTGCATATTTTGCTGATGGAACATCCTGCGTTGGGAGAAACAGGTTAAGCAACGTACATTTCTTGTCTTGCTTCTGTATATTATATATATATTCAGAGAATGATTAGTTTGTTAGTAGTTTCTATAGGCTGATGAGTTTACGTCTCCTACCATTTCTAAGTGGCTTTCCTAGTTCATCATCTTCTTGATGGTAAAATTAATTTTTACCGTAGTGGAAATTTGTGGAAATTTTTTCTTTGTTGCTATGCCACTTCTACTTTATTTTACAGTATAATAGGAAGATTCTTCTGCTAATATGATTATAGCTCAACCAGATACCTCGACCAAGAGGTCAAAGGTTGTAATCTCCTCATCTCCACAGTGAAACTCAAAAAAGGAAAAGAAAAAAAACATGAAGATTCTTCTCGATCATATGTTAGATGCACGTGCACCGACCAGGGTGAAGAAGGTTCTGGATTTGGATACCTAAATAATGATTTGGGACCACTCGTTTTGCAAACCTAGAAAGATAGATAAATGTGAAATCTGTCTGGTAAACAAATAACTAAGCTCCCCCACCCGTGTGAGTTTCATTAATGTTAGTATCCTGTTCTCGTCCTTTGTTTTTGTAGTAAAGAAAAATAAAAATGAATAAACAATGATCCTAATTTTAGAACACAAGTTACTAGATTTTAGCTTTTCTCTAGCAAAATAGAAATCAATATGAGCCAAAATGATGCAAACATTCTAGAGCATCTGAACATATAATGTCTTCTCTTTCTTACTTTTCTTGGCTAAAATCGGTTAAATCAAGTTTAGTTGTAAAGTTAGATAGTTCATTTTTTAAGGACATTTTGTCTTATATCAGTGATTGGTTCCAACCATATTATTAACTTTTGAGTCCCAACTCAGAAACAACACTATGGAGGAAGGTACAAAGAGGAAAATTTCAAAAATATACCGTGCACTTGTGGCTGGAATAATTCATGATGACGAGGTATATTATATATTATGATATTTCTTGGATAACTTCGCGTGGTTAAATCTTTTCATTTCATCCTTGAAATTTCTTTACTGTTCTAACAGTGCCATTTGCTGAGCTAGTAATAGTAATTCTACAATGTTAGATGATATTTGTTGGACGGTCTATTAGCAAGGGTCATTTGTTCTGAAATTTCATATAAGTGAGGATGAAAATCTCTGCACGTAGTTGAAAATTTTAAGCTCCGAGTTCGGGTGCAGAATAATTGGGGGTTTGGTCCAATAAGTGGTTTTTACATCACTGTGCACTGAAAGCTAGTTTTGTTTCCTGTCAAAAAGGTTTTCTTTCTCGTGAACTTCATATATATGATTAAGAGTGTTGTTTTTATAGGTTAGCATTGACCAGCCAATTGGAAGGATGCGATATCCAGGGGTTGCTCAGGGCCTGTATGTTGCTACTTCCTCAGGTTTTTGGTTGCATCTTATCTGCTTATTCAACAAATTCCATGTTTTCTTGAGAAGACGGTATTGATACCTTAAAATATACAAGATAGGGAAAGCCCCTATCTCAAAGTTTCTGTAATGTGTGGAATTCTTGATAAATTTTAGTTGGCCATCACGATTATTCTATCCATTGTGTTCCTGACCGTTTCTTCAGTATTTACTCGTTTCAACACAATCATATTTGCTTTTTTGAATTAATAACTTGAGCAGGGAAACCAGCTTTCAGTAAAGTCAATGTTCTTGAAAGAGACGAACAAGGCAAACACACTTTGGTCCAGGTATCTCATCTTTGACTTTTATGTTTTCTTATGTACTTATATTTCTTTTCAAATGGGATCTTTTTAATATAAATGAATATCTTTGATTCTTTTTCTGATCATCAATTATCACTACCAGAACTCCTTTGTTAGGCTTCCCATTTGACTTATCATTCACTCCAACCCTCCCTCACTCGAACACAACCTAAAACGCACCTATATGACACATACTGTCAATTCTCCATCATGTATATATTTAAAGCATGGACCATATTTTTCTGACCATCACATATATATTGTTAGATGACAATCTAGAAAGACTAACGAACATAAGAGTGTGGGGAAGATGTGTGGGCATTGAAGGATAATTTTAGTGGTAATCATAGCAGGCACAACGAACAAACTTTTATACTTCGACATTCGCATGTTCTGCTTGTGATGGGATCTACTGCCAAGGTCTCAATGCTCGACTTTGTTTTCGTACATTAGTTAGCATTGATTGAGATGTCATTAATTATTTTTGGAAGCCATATAAAGAGAGTTTGCAGCTGGTCCAGTAGTGAAATTTTTCTGAAAAGGAGAATGAATCGTGTGATGCACCACAGTTCGAAGGCCTTAAATTACGTCATATATTTTACAGGTAGAAATTCAGTCTGGACGACCCCACCAAATCCGCATCCACCTTTCTTCAATAGGACATCCTTTAATAGGTAAGCCTGTTTATAAAAATTATGTAATTTTTCAGCTTTTAAATGCTTTGGGTGTTCTGGTTTTATAGACCAACTTTTACGTCCAACAACCGTCAGTTGACTTGCATCTTTGTGACTTCTCATTTTCAATACGAGTGCTGAAAATTCTTTGCCAAAGTTTTACTTTTTCGTTTCTGCTTTCCTGGTAGGTGATCCTCTCTATGTTGCTGGCGGGCAACCAAACTGCCTTCATTCTGGGTTGGTAGATCAGAGTTTTGCAGAAGACGGGTATGAAATTGCTGTTTCAATTAATAAAAATTTTCATTCTCCTTGTTCTGGCCCGCATAAAACTTGTAGCAAGCATCATTGTTTTTTTCTCTTTTGTCTAGGGTGAATTATGAAAAGCAGACAATATGTTTGGTATCATAAATTGATGGGAAGATGTTAAATTAATTACCGGATGAAAACTTTGAAAGGTCGACTCATTTTGGTGTGAAATGTTTGGAATGGCATGCATGGAATTTTCACGCATTACGCATTTGTTCTGTAGGATAGGTATTAGCAAGTATTCCCTGTTGAGAAGTTTAACGTCCCCATCCTTATATGTATATTTTGTCCAGAGGTTACCGAAGGCCTGCGAAACCTGTGCCTGGAGATTGTGGCTACTACTTGCACGCACATCAGTTGGTCCTTCATCACCCAAAAACCAGTGAGGTAAGCTTTTGAAAAAGAGATGCAAAAGTTCTTGTGATGGCTGCATTTAATTTTCGTATAGAACAATGGCTATGGGTACTGAATTATGTCATTTTGTGCGCACCTAGTGCGTTCTTTTATTTGTCTTTTAACTTATTTCTCGTGTATAAACTAGAACTAAGAGGGTCTCCTCTGTTGCTTAAGGTTGTCAAGATCGTTGCCCCGCTTCCCCCTATCCTCCGGACACATGGGGAGTCTGAAGATGCCGGAAATAGAGTGGGATAAATAAATCATTGCATGGTGGATGTCAAAAAGATTAGTTCAAGGCGAAAACTTTTCATGTGGGAATGAATGGAAACTCGATAAGAATAAGTACTTTCAAAAGATTTATTTAAAAGGTTTTAGAAATAATTTTAAAGATGTACCCATAGAGCCCTTATCAGAACTGCTAACCTGATTTGTCTCCAGGGATAATCAATGGCCTGTTCTGATCAAATTCAACTTGGGAGTAAAAAAAGGATGTCAACATTATTGGCGTTGTTGACGGCTCCCTTGGCTTGAACAGGGGCGATCCATAAAAGTGTTAACTCGCAGTGGGATTTATGTAAGAAACTGAGGAATATAATATTCTGAAGCAATACTTACCCTCTTTTTGCCCACAAGAGACGGCAATACGAACCGTCAAATTCTGCTATCATTAATTGACATCAACGAAACTATGGTACATGGTGCAGCAAAAGAAACAATTTGCTGCTGAGGGCCTCTGTTGACAAGGCTCTCTGAACATATCTACTACCAGCTAATTCTCTTTTCTATGAGCCACCACCCCCCTCAGCAGCCTTATTGCAATGCAATTTAGTATCTGATGCATCATCATCATCGTCATCATTACAATTCTTTCCTACAATAATTCCCTCCTTACTACTATTTACCTCAGACATCTGATTGCTATTTGATTTCTGTCCGTTGCAAATAGGCTGCTGCTCAATCAGAGAGGCGGTTTTGGAGCAATGATCAAATGTAGGATATCTGGACAGTAGGGTATTGGGATCAGGTAGTGATGAAAACCCGGTTCGCATTCGACTCCCATCCCAAAACCCATAACTTCTCGAGGGAGCATCCTCCTCTTGGCCAGAAGAATTTTTACGATCGAATTTGGCAGTGATCAGATTTCCATGGCTATTTACTTTCAATCTGCACTTCAACTTATGGTGAAGCTCGGTCCTGTTTCCATTCTCACTGGATCCAGATTTTGAACTCGGGACAGACGAGGAATGTGTAAGAATCTGACCGAATAATTTCAAGTCACCATTTCTAGATGATTGTTCGGAATCAGACAAACTACGTGAATGCACTCTGACGTGATGACACCCTTGTTCCTCTTTAGACAATGAGATCACACGAGTATTTAAGGGCATTGAAGAGTTATCTGCTGTGTGGGAGTGGGCTTTATCACTTCGATCACTGCTAGTATCTACACTTACCCTCTTGGTTTCAGCATTTGAATCATTTCCAACTAATGCTGCAACCAAAGCAGAAATGCCTTGTTCTTTTGCAGTTTCATCAGATACGACTGTGTGTCGCTGCTCGAGTACCAAACCGTTCTTATCATGGGTAGAATTCACAGACTGACAGTCATCATCAAAACCCGAAAGAAAGCCATCCTTCCTATTATATGCATCATCAGACACCATAGCATCCACAGCAGCATTACTACAAGTCTTTGAGGAAGGATTACTCTCCTTGACTTCCTGATGGATAGACTGCAGATTCTTCGACTCTGTTACGCCACCACTTATACACGTCACAGACTTCGGCAAGTCATCAACCATCTGAGAGCTTACCCGTTCGCAAGGAAAGGCATCTTTGGTATCTACCCCTGCTTCACAATCACCTCCATTAATGCCATGGCCGTTTCCATCTTCTGGCATTTTCTTTGCAGAACATAACACATCCAACCCAAGGCACTTTCGTGCTTTGCTAAAGAAGACCTTGCACTGGTCCGTGGATTTTGATCCTACATGGGTAGAGATCATGGAAAAATTCTTCCCATAAACAGACACTGCTTCTATGAAAAGCGACTTCTCCCCATCTGTCCAATAAGAAGGATCCATTTCTCCACAACTCTCATCTGAAAAAATCTCATCATCAACACACTGCTGAACATTGTTTGTAATACGTCTTAACACGGTTGTAGCACCACCCTTTTTGCACTTCAAATCCTGAGAACCATCTCCCCGGTCGAAATTACTCGTGACACATGAACCCAGGGCTTCTGAAGACAAGGAGCCACATATTCCAGCTAAAACATCAGCAGCCACCTTTTCTCTTTCATTTCCAAAACCATGAAAACTTTTGGCCCTTTCTGAAAGATCATCATCGAATTGAGTTGTGCGATACGCTGTTCTTCCACCAGACCTGCTGCTAGAATACTTATGAGCACGGACCATCGCAGCACCCAACATGTCAAGAGAAGCAGCATTTGCTTCTGAATTCCATTTCTTTCCTGTTGTCATCAAATAGTTACCGGTAGACTTCGCTTTCTTCCCAAACTCCAGCTTCTTTGTTTTCTCAAAGCAATCTGATTTGTGGTTTTTGTAATAGAACTCAATACAGTCTGCTGTTGTCTTATGATCAAGAAAAGATGCAATTTTCCCGAAATCTTTTCCGAAACATTCCAACTTCTCCATGAAAACTTCTTTCTCTTCTGAGGACCACGGGTTAATCATCGCCCGTTCCTTCTCAACAGCGCACGGGTTCTCAACTAATCCATTATTAGAGATGAACCTCGAGGCCATCTTATCCTTCTGGTCCAAAATTAATGCGGGCATCTTCAACGTCGTCCGGTACTGCTTAATCTGGGGACTAGAAAGCTGCATGCTCATGTGCTTAAGAATCTCCGCGTTAGAGACCGAGTGGTTCAGATTTCCTGCTGCAAGGCCAGTTTTAAAATTCAAAATGATAATA

mRNA sequence

TGACCGAGTCGAGAGATTGTTGAAAGTTTTTTTTTCCCTCTTACTCTCCTCTTCAAGACAACGCTACTTCCAGTTCCCGCCCTTGATTCTGTACTGAATTCCTGCATTTCAATTATCATTGTTGTGTAAATTCGTTTCTTGATTTTTACATTCAAGATCAATCGCTATAATGCTTGGAAGATCCTTTCAAGTTATCGGAATTCCATGGCCCGATCTCAACGACGGATTATTCTACAACGATGTCGTTAAACCCTCCGACTCCGGGATGTCTTTGATCGAGTTCTATTCTCGCAAATATAAGAGTTCGGCTCCACTGGAAGGCTGGTTGCAGCGAATTCAGAACGAACAGATAACGATCGATGGTCAGGTTATCACAGATCCCGAAACAATTCTCAGGATTGGTTCTGAAGTAGTTTATCGTCGACTTCCGTGGAAAGAACCGGATACCCCTTATTTACTTGAGGTTCTATATGAAGACGATGAAATGATTGCATTAAATAAACCGTCTGGCTTGCAAGTATTACCTGGCGGTGTCTTCCAGCAACGGACAGTTTTGACGCAGCTTCAATGGTGGTCAAGCAAGCAGAGTTCCTCCGTCTCAAAAGAGTTGCACCCTGTTCCTGTTCATCGCCTAGGAAGGGGGACTTCAGGTATTTTATTATGTGCAAAAACGAGGCTCGCTAGAACACAGTTTGCTGCATATTTTGCTGATGGAACATCCTGCGTTGGGAGAAACAGAAACAACACTATGGAGGAAGGTACAAAGAGGAAAATTTCAAAAATATACCGTGCACTTGTGGCTGGAATAATTCATGATGACGAGGTTAGCATTGACCAGCCAATTGGAAGGATGCGATATCCAGGGGTTGCTCAGGGCCTGTATGTTGCTACTTCCTCAGGGAAACCAGCTTTCAGTAAAGTCAATGTTCTTGAAAGAGACGAACAAGGCAAACACACTTTGGTCCAGGTAGAAATTCAGTCTGGACGACCCCACCAAATCCGCATCCACCTTTCTTCAATAGGACATCCTTTAATAGGTGATCCTCTCTATGTTGCTGGCGGGCAACCAAACTGCCTTCATTCTGGGTTGGTAGATCAGAGTTTTGCAGAAGACGGAGGTTACCGAAGGCCTGCGAAACCTGTGCCTGGAGATTGTGGCTACTACTTGCACGCACATCAGTTGGTCCTTCATCACCCAAAAACCAGTGAGGTTGTCAAGATCGTTGCCCCGCTTCCCCCTATCCTCCGGACACATGGGGAGTCTGAAGATGCCGGAAATAGAGTGGGATAAATAAATCATTGCATGGTGGATGTCAAAAAGATTAGTTCAAGGCGAAAACTTTTCATGGATAATCAATGGCCTGTTCTGATCAAATTCAACTTGGGAGTAAAAAAAGGATGTCAACATTATTGGCGTTGTTGACGGCTCCCTTGGCTTGAACAGGGGCGATCCATAAAAGTGTTAACTCGCAGTGGGATTTATGTAAGAAACTGAGGAATATAATATTCTGAAGCAATACTTACCCTCTTTTTGCCCACAAGAGACGGCAATACGAACCGTCAAATTCTGCTATCATTAATTGACATCAACGAAACTATGGTACATGGTGCAGCAAAAGAAACAATTTGCTGCTGAGGGCCTCTGTTGACAAGGCTCTCTGAACATATCTACTACCAGCTAATTCTCTTTTCTATGAGCCACCACCCCCCTCAGCAGCCTTATTGCAATGCAATTTAGTATCTGATGCATCATCATCATCGTCATCATTACAATTCTTTCCTACAATAATTCCCTCCTTACTACTATTTACCTCAGACATCTGATTGCTATTTGATTTCTGTCCGTTGCAAATAGGCTGCTGCTCAATCAGAGAGGCGGTTTTGGAGCAATGATCAAATGTAGGATATCTGGACAGTAGGGTATTGGGATCAGGTAGTGATGAAAACCCGGTTCGCATTCGACTCCCATCCCAAAACCCATAACTTCTCGAGGGAGCATCCTCCTCTTGGCCAGAAGAATTTTTACGATCGAATTTGGCAGTGATCAGATTTCCATGGCTATTTACTTTCAATCTGCACTTCAACTTATGGTGAAGCTCGGTCCTGTTTCCATTCTCACTGGATCCAGATTTTGAACTCGGGACAGACGAGGAATGTGTAAGAATCTGACCGAATAATTTCAAGTCACCATTTCTAGATGATTGTTCGGAATCAGACAAACTACGTGAATGCACTCTGACGTGATGACACCCTTGTTCCTCTTTAGACAATGAGATCACACGAGTATTTAAGGGCATTGAAGAGTTATCTGCTGTGTGGGAGTGGGCTTTATCACTTCGATCACTGCTAGTATCTACACTTACCCTCTTGGTTTCAGCATTTGAATCATTTCCAACTAATGCTGCAACCAAAGCAGAAATGCCTTGTTCTTTTGCAGTTTCATCAGATACGACTGTGTGTCGCTGCTCGAGTACCAAACCGTTCTTATCATGGGTAGAATTCACAGACTGACAGTCATCATCAAAACCCGAAAGAAAGCCATCCTTCCTATTATATGCATCATCAGACACCATAGCATCCACAGCAGCATTACTACAAGTCTTTGAGGAAGGATTACTCTCCTTGACTTCCTGATGGATAGACTGCAGATTCTTCGACTCTGTTACGCCACCACTTATACACGTCACAGACTTCGGCAAGTCATCAACCATCTGAGAGCTTACCCGTTCGCAAGGAAAGGCATCTTTGGTATCTACCCCTGCTTCACAATCACCTCCATTAATGCCATGGCCGTTTCCATCTTCTGGCATTTTCTTTGCAGAACATAACACATCCAACCCAAGGCACTTTCGTGCTTTGCTAAAGAAGACCTTGCACTGGTCCGTGGATTTTGATCCTACATGGGTAGAGATCATGGAAAAATTCTTCCCATAAACAGACACTGCTTCTATGAAAAGCGACTTCTCCCCATCTGTCCAATAAGAAGGATCCATTTCTCCACAACTCTCATCTGAAAAAATCTCATCATCAACACACTGCTGAACATTGTTTGTAATACGTCTTAACACGGTTGTAGCACCACCCTTTTTGCACTTCAAATCCTGAGAACCATCTCCCCGGTCGAAATTACTCGTGACACATGAACCCAGGGCTTCTGAAGACAAGGAGCCACATATTCCAGCTAAAACATCAGCAGCCACCTTTTCTCTTTCATTTCCAAAACCATGAAAACTTTTGGCCCTTTCTGAAAGATCATCATCGAATTGAGTTGTGCGATACGCTGTTCTTCCACCAGACCTGCTGCTAGAATACTTATGAGCACGGACCATCGCAGCACCCAACATGTCAAGAGAAGCAGCATTTGCTTCTGAATTCCATTTCTTTCCTGTTGTCATCAAATAGTTACCGGTAGACTTCGCTTTCTTCCCAAACTCCAGCTTCTTTGTTTTCTCAAAGCAATCTGATTTGTGGTTTTTGTAATAGAACTCAATACAGTCTGCTGTTGTCTTATGATCAAGAAAAGATGCAATTTTCCCGAAATCTTTTCCGAAACATTCCAACTTCTCCATGAAAACTTCTTTCTCTTCTGAGGACCACGGGTTAATCATCGCCCGTTCCTTCTCAACAGCGCACGGGTTCTCAACTAATCCATTATTAGAGATGAACCTCGAGGCCATCTTATCCTTCTGGTCCAAAATTAATGCGGGCATCTTCAACGTCGTCCGGTACTGCTTAATCTGGGGACTAGAAAGCTGCATGCTCATGTGCTTAAGAATCTCCGCGTTAGAGACCGAGTGGTTCAGATTTCCTGCTGCAAGGCCAGTTTTAAAATTCAAAATGATAATA

Coding sequence (CDS)

ATGCTTGGAAGATCCTTTCAAGTTATCGGAATTCCATGGCCCGATCTCAACGACGGATTATTCTACAACGATGTCGTTAAACCCTCCGACTCCGGGATGTCTTTGATCGAGTTCTATTCTCGCAAATATAAGAGTTCGGCTCCACTGGAAGGCTGGTTGCAGCGAATTCAGAACGAACAGATAACGATCGATGGTCAGGTTATCACAGATCCCGAAACAATTCTCAGGATTGGTTCTGAAGTAGTTTATCGTCGACTTCCGTGGAAAGAACCGGATACCCCTTATTTACTTGAGGTTCTATATGAAGACGATGAAATGATTGCATTAAATAAACCGTCTGGCTTGCAAGTATTACCTGGCGGTGTCTTCCAGCAACGGACAGTTTTGACGCAGCTTCAATGGTGGTCAAGCAAGCAGAGTTCCTCCGTCTCAAAAGAGTTGCACCCTGTTCCTGTTCATCGCCTAGGAAGGGGGACTTCAGGTATTTTATTATGTGCAAAAACGAGGCTCGCTAGAACACAGTTTGCTGCATATTTTGCTGATGGAACATCCTGCGTTGGGAGAAACAGAAACAACACTATGGAGGAAGGTACAAAGAGGAAAATTTCAAAAATATACCGTGCACTTGTGGCTGGAATAATTCATGATGACGAGGTTAGCATTGACCAGCCAATTGGAAGGATGCGATATCCAGGGGTTGCTCAGGGCCTGTATGTTGCTACTTCCTCAGGGAAACCAGCTTTCAGTAAAGTCAATGTTCTTGAAAGAGACGAACAAGGCAAACACACTTTGGTCCAGGTAGAAATTCAGTCTGGACGACCCCACCAAATCCGCATCCACCTTTCTTCAATAGGACATCCTTTAATAGGTGATCCTCTCTATGTTGCTGGCGGGCAACCAAACTGCCTTCATTCTGGGTTGGTAGATCAGAGTTTTGCAGAAGACGGAGGTTACCGAAGGCCTGCGAAACCTGTGCCTGGAGATTGTGGCTACTACTTGCACGCACATCAGTTGGTCCTTCATCACCCAAAAACCAGTGAGGTTGTCAAGATCGTTGCCCCGCTTCCCCCTATCCTCCGGACACATGGGGAGTCTGAAGATGCCGGAAATAGAGTGGGATAA

Protein sequence

MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQPNCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILRTHGESEDAGNRVG

Homology

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy Swiss-Prot
Match: Q5M721 (RNA pseudouridine synthase 5 OS=Arabidopsis thaliana OX=3702 GN=At3g52260 PE=2 SV=2)

HSP 1 Score: 503.4 bits (1295), Expect = 2.1e-141
Identity = 252/365 (69.04%), Postives = 294/365 (80.55%), Query Frame = 0


Query: 7   QVIGIPWPDLNDGLFYNDVVKPSDSGMSLI-EFYSRKYKSSAPLEGWLQRIQNEQITIDG 66
           Q IG+PWP+LNDGL Y D +  S+S ++ + EFY  KYKSSAPL GW+QRIQN QI IDG
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDG 65

Query: 67  QVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPGGVFQQ 126
           +V+ DP T+LR GS++VY RLPWKEPDTPY LEVLYEDD++IALNKPSGLQVLPGG+FQQ
Sbjct: 66  EVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQ 125

Query: 127 RTVLTQLQWWSSKQSSSVS--KELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFADGT 186
           RTVLTQLQW   K  S +   +  HPVPVHRLGRGTSGILLCAKT+LA+T+ AAYFA+GT
Sbjct: 126 RTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGT 185

Query: 187 SCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATSS 246
           S VG + N   E GT RK+SKIYRAL  GI+ +DEV I QPIG +RYPGVAQGLYVA+  
Sbjct: 186 SLVG-SGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPE 245

Query: 247 GKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQPNCL 306
           GKPAFSKV VLERD +   +LV+VEIQSGRPHQIRIHL+ +GHPL+GDPLYVAGGQP C 
Sbjct: 246 GKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYVAGGQPKCF 305

Query: 307 HSGLVDQ--SFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHH-PKTSEVVKIVAPLPPILR 366
              LVD   +FAEDGGYRRP + VPGDCGY+LHAHQ+ L +   T +VVKIVAPLPPIL+
Sbjct: 306 DPDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHKVVKIVAPLPPILQ 365

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy Swiss-Prot
Match: Q0DST9 (RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0288500 PE=2 SV=2)

HSP 1 Score: 462.2 bits (1188), Expect = 5.5e-129
Identity = 232/373 (62.20%), Postives = 279/373 (74.80%), Query Frame = 0


Query: 10  GIPWPDLNDGLFYNDVVKPSDSG--MSLIEFYSRKYKSSAPLEGWLQRIQNEQITIDGQV 69
           G PWP+ N+G+ Y D  + +D+G   +LIEFYS  YKSSAPL GW++RI++ QIT+DG+V
Sbjct: 25  GTPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLPGWIKRIRDGQITVDGEV 84

Query: 70  ITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPGGVFQQRT 129
            TDP+ ILR GS++VY RLPW+EP  P+LL+VLYEDD+MIALNKPSGLQVLP G+FQQRT
Sbjct: 85  ATDPDMILREGSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRT 144

Query: 130 VLTQLQWWSSKQSSSV-----SKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFADG 189
           VL QLQ    K  SS        + HPVPVHRLGRGTSG+LLCAKT+LA+ Q AAYFA+G
Sbjct: 145 VLAQLQLKDWKMPSSFCSKRKDAQSHPVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEG 204

Query: 190 TSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATS 249
            +  G++R+ T +    RKISK YRALV GI+ +DEV I QPIG +RYPGVA+GLY A S
Sbjct: 205 ATNAGKSRDET-DICKARKISKFYRALVTGILENDEVMITQPIGLVRYPGVAEGLYAACS 264

Query: 250 SGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQPNC 309
           SGKPA SKV VLER +   HTL+QVEI SGRPHQIRIHL+ IGHPL+ DPLY  GGQP  
Sbjct: 265 SGKPAMSKVRVLERLKIHNHTLIQVEIHSGRPHQIRIHLAYIGHPLVDDPLYGIGGQPKF 324

Query: 310 --LHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 369
                     SFA DGGY RP +PVPGDCGY+LHAH LVL HP T+E++KI APLP IL+
Sbjct: 325 DEPEPTSTADSFAYDGGYERPLQPVPGDCGYHLHAHWLVLCHPTTNEMIKITAPLPHILQ 384

Query: 370 THGESEDAGNRVG 374
           T  E +D    +G
Sbjct: 385 TREEQQDTAKLLG 396

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy Swiss-Prot
Match: P72970 (Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1592 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.1e-51
Identity = 125/328 (38.11%), Postives = 180/328 (54.88%), Query Frame = 0


Query: 35  LIEFYSRKYKSSAPLEGWLQRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKEPDTP 94
           +++FYS++Y  S   + W +RI+  QI +DG+ + DP   L+ G  + Y R PW EP+ P
Sbjct: 1   MLDFYSQRYLHS-ERQAWQERIEQGQIEVDGKTV-DPTYPLQAGQTLTYWRSPWVEPEVP 60

Query: 95  YLLEVLYEDDEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHR 154
             L VL+ D+++ A++KPSGL VLPGG F   TVL QL+    ++S          P+HR
Sbjct: 61  LQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQLKIQYPQESL--------FPLHR 120

Query: 155 LGRGTSGILLCAKTRLARTQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGII 214
           LG GTSG+LL  ++ L R + +  F +                      KIYR ++    
Sbjct: 121 LGTGTSGLLLLGRSTLGRRELSRQFRE------------------HICRKIYRTVIGPCD 180

Query: 215 HDDEVSIDQPIGRMRYPGVAQGLYVATSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRP 274
             ++    Q IG++ YP +   +Y A+S GKPA S   +L R  +   T ++VEI++GRP
Sbjct: 181 LPEKFECHQAIGKIPYPQLGY-IYAASSHGKPAQSYGRILARSPE--KTWLEVEIRTGRP 240

Query: 275 HQIRIHLSSIGHPLIGDPLYVAGGQP-NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYL 334
           HQIRIHL+S+G+PL+GD LY  GG P NC                 R A+  P D GY L
Sbjct: 241 HQIRIHLASLGYPLLGDRLYGPGGVPINC-----------------RTAR--PSDGGYTL 278

Query: 335 HAHQLVLHHPKTSEVVKIVAPLPPILRT 362
           H++QL   H  T + +K+ APLPP L T
Sbjct: 301 HSYQLGFLHLHTQQAIKLTAPLPPELIT 278

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy Swiss-Prot
Match: P33640 (Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluD PE=3 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 5.8e-30
Identity = 102/317 (32.18%), Postives = 156/317 (49.21%), Query Frame = 0


Query: 45  SSAPLEGWLQRIQNEQITIDGQVITDPETILRIGSEVVYR-----RLPWKEPDTPYLLEV 104
           S + L GW   I++ ++T+DG V+  P  I+  G+++V       +  W   D    LE+
Sbjct: 32  SRSRLAGW---IKDGRLTVDGAVLR-PRDIVHSGAQLVLEAEQEAQGEWLAQDIE--LEI 91

Query: 105 LYEDDEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGT 164
           +YED+ ++ ++KP+GL V P    Q  T+L  L +        ++       VHRL + T
Sbjct: 92  VYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLY----HVPDIANVPRAGIVHRLDKDT 151

Query: 165 SGILLCAKTRLARTQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEV 224
           +G+++ AKT  A T+  A                      R +S+IY A+V G+I     
Sbjct: 152 TGLMVVAKTLEAHTKLVAQL------------------QARSVSRIYEAIVIGVITSGG- 211

Query: 225 SIDQPIGRMRYPGVAQGLYVATSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRI 284
           +ID PIGR    GV +       +GK A S   VLER     HT  +V++++GR HQIR+
Sbjct: 212 TIDAPIGR---HGVQRQKMAVVDAGKVAVSHYRVLERFR--AHTHTRVKLETGRTHQIRV 271

Query: 285 HLSSIGHPLIGDPLYVAGGQPNCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLV 344
           H+S IG+PL+GDP+Y    +   + S  + Q+  E   + R A          LHA  L 
Sbjct: 272 HMSHIGYPLVGDPVYGGRFRIPPVASQTLVQTLRE---FPRQA----------LHARFLE 301

Query: 345 LHHPKTSEVVKIVAPLP 357
           L HP T   +K  +PLP
Sbjct: 332 LDHPATGVRMKWESPLP 301

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy Swiss-Prot
Match: P74346 (Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1629 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-28
Identity = 92/306 (30.07%), Postives = 146/306 (47.71%), Query Frame = 0


Query: 56  IQNEQITIDGQVITDPETILRIGSEVVY---RRLPWKEPDTPYLLEVLYEDDEMIALNKP 115
           I++ Q+  +G V  D   IL+ G  +V      +P         L++LYED+++I +NKP
Sbjct: 54  IESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDVVAQNIPLDILYEDEQLIIINKP 113

Query: 116 SGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLAR 175
           +GL V PG      TV+  L        + +     P  VHRL + T+G ++ AKT LA 
Sbjct: 114 AGLVVHPGPGHPDGTVVNAL-LAHCPDLAGIGGVQRPGIVHRLDKDTTGAMVVAKTELAL 173

Query: 176 TQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPG 235
                           N    ++E T R   ++Y  +V G   + + +++ P+G  R+PG
Sbjct: 174 ---------------HNLQVQLKEKTAR---RLYWGIVYGSPKEIQGTVNLPVG--RHPG 233

Query: 236 VAQ--GLYVATSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIG 295
             Q  G+      G+ A +   +LER   G H+ ++ ++++GR HQIR+H   +GHPL+G
Sbjct: 234 DRQKMGIVPVEKGGREAVTHWRLLER--IGNHSWLEFQLETGRTHQIRVHSKQMGHPLVG 293

Query: 296 DPLYVAGGQPNCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVK 355
           D LY + G  N                       +PG     LHAHQL L HP + E++ 
Sbjct: 294 DNLYTSPGSVNV---------------------NLPGQA---LHAHQLSLIHPVSGEIIT 312

Query: 356 IVAPLP 357
            +AP+P
Sbjct: 354 AIAPMP 312

[Close]

BLAST of Cp4.1LG13g09740 vs. NCBI nr
Match: XP_023551339.1 (RNA pseudouridine synthase 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 764 bits (1974), Expect = 5.18e-279
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA
Sbjct: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP
Sbjct: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR
Sbjct: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360

Query: 361 THGESEDAGNRVG 373
           THGESEDAGNRVG
Sbjct: 361 THGESEDAGNRVG 373

[Close]

BLAST of Cp4.1LG13g09740 vs. NCBI nr
Match: XP_022938426.1 (RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata] >XP_022938427.1 RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 754 bits (1948), Expect = 4.76e-275
Identity = 367/373 (98.39%), Postives = 371/373 (99.46%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQSSSVS+ELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA
Sbjct: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPA+SKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS LVDQSFAEDGGY+RP KPVPGDCGYYLHAHQLVLHHPKTSEVVKI+APLPPILR
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSEVVKILAPLPPILR 360

Query: 361 THGESEDAGNRVG 373
           THGESEDAGNRVG
Sbjct: 361 THGESEDAGNRVG 373

[Close]

BLAST of Cp4.1LG13g09740 vs. NCBI nr
Match: KAG6578753.1 (RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 752 bits (1942), Expect = 6.16e-274
Identity = 365/373 (97.86%), Postives = 371/373 (99.46%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQSSSVS+ELHPVPVHRLGRGTSGILLCAKTRLARTQF+AYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFSAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA
Sbjct: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPA+SKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLMGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS LVDQSFAEDGGY+RP KPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360

Query: 361 THGESEDAGNRVG 373
           THGESEDAGNR+G
Sbjct: 361 THGESEDAGNRLG 373

[Close]

BLAST of Cp4.1LG13g09740 vs. NCBI nr
Match: XP_022994066.1 (RNA pseudouridine synthase 5 [Cucurbita maxima])

HSP 1 Score: 747 bits (1928), Expect = 5.33e-272
Identity = 363/373 (97.32%), Postives = 369/373 (98.93%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLI+FYSRKYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIDFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRR PWKEPDTP LLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRFPWKEPDTPCLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQSSSVS+ELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCVGR+RNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA
Sbjct: 181 DGTSCVGRSRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPA+SKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS LVDQSFAEDGGY+RP KPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360

Query: 361 THGESEDAGNRVG 373
           THGESEDAGNRVG
Sbjct: 361 THGESEDAGNRVG 373

[Close]

BLAST of Cp4.1LG13g09740 vs. NCBI nr
Match: XP_038889122.1 (RNA pseudouridine synthase 5 isoform X1 [Benincasa hispida])

HSP 1 Score: 701 bits (1809), Expect = 7.61e-254
Identity = 339/368 (92.12%), Postives = 355/368 (96.47%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           ML RSFQVIGIPWPDLNDGLFYNDVVKP DSG SLIEFYS KYKSSAPLEGWLQRI+NEQ
Sbjct: 2   MLRRSFQVIGIPWPDLNDGLFYNDVVKPFDSGKSLIEFYSCKYKSSAPLEGWLQRIKNEQ 61

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLE+LYEDDEMIALNKPSGLQVLPG
Sbjct: 62  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEILYEDDEMIALNKPSGLQVLPG 121

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQS SVS+ELHPVPVHRLGRGTSGILLCAKT+LARTQFAAYFA
Sbjct: 122 GVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCV RN N+TMEE TKRKISKIYRALV GIIHDDEVS+D PIGRM+YPGVAQGLYVA
Sbjct: 182 DGTSCVRRNGNSTMEEVTKRKISKIYRALVTGIIHDDEVSVDHPIGRMQYPGVAQGLYVA 241

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           T SGKPA+SKVNVLERDEQG+HTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 242 TPSGKPAYSKVNVLERDEQGQHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 301

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS +VDQSFAEDGGY+RP KPVPGDCGYYLHAHQLVL+HPKT+EVVKIVAPLPP+LR
Sbjct: 302 NCLHSEVVDQSFAEDGGYQRPMKPVPGDCGYYLHAHQLVLYHPKTNEVVKIVAPLPPMLR 361

Query: 361 THGESEDA 368
           THGE+EDA
Sbjct: 362 THGEAEDA 369

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy TrEMBL
Match: A0A6J1FE06 (RNA pseudouridine synthase 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444674 PE=4 SV=1)

HSP 1 Score: 754 bits (1948), Expect = 2.31e-275
Identity = 367/373 (98.39%), Postives = 371/373 (99.46%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQSSSVS+ELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA
Sbjct: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPA+SKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS LVDQSFAEDGGY+RP KPVPGDCGYYLHAHQLVLHHPKTSEVVKI+APLPPILR
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSEVVKILAPLPPILR 360

Query: 361 THGESEDAGNRVG 373
           THGESEDAGNRVG
Sbjct: 361 THGESEDAGNRVG 373

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy TrEMBL
Match: A0A6J1JY31 (RNA pseudouridine synthase 5 OS=Cucurbita maxima OX=3661 GN=LOC111489868 PE=4 SV=1)

HSP 1 Score: 747 bits (1928), Expect = 2.58e-272
Identity = 363/373 (97.32%), Postives = 369/373 (98.93%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLI+FYSRKYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIDFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQVITDPETILRIGSEVVYRR PWKEPDTP LLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRFPWKEPDTPCLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSSKQSSSVS+ELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTSCVGR+RNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA
Sbjct: 181 DGTSCVGRSRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPA+SKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS LVDQSFAEDGGY+RP KPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360

Query: 361 THGESEDAGNRVG 373
           THGESEDAGNRVG
Sbjct: 361 THGESEDAGNRVG 373

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy TrEMBL
Match: A0A6J1BWD7 (RNA pseudouridine synthase 5 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006297 PE=4 SV=1)

HSP 1 Score: 683 bits (1762), Expect = 4.12e-247
Identity = 327/367 (89.10%), Postives = 346/367 (94.28%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           MLG S  VIG+PWPDLNDGLFYNDVVKPSDSG +LIEFYS KYKSSAPLEGWLQRIQNEQ
Sbjct: 1   MLGTSSPVIGVPWPDLNDGLFYNDVVKPSDSGKALIEFYSSKYKSSAPLEGWLQRIQNEQ 60

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDGQ+ITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQIITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRT+LTQLQWWS KQSSSVS+  HPVPVHRLGRGTSGILLCAKTRLARTQ AAYFA
Sbjct: 121 GVFQQRTILTQLQWWSRKQSSSVSEGSHPVPVHRLGRGTSGILLCAKTRLARTQLAAYFA 180

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DG  C+GRNRN +M EGTKRKISKIYRALV GI+HDDEVSIDQPIGR+ YPGVAQGLYVA
Sbjct: 181 DGAFCIGRNRNTSMVEGTKRKISKIYRALVTGIVHDDEVSIDQPIGRIHYPGVAQGLYVA 240

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           TSSGKPAFSKV+VLERDEQG +TLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 241 TSSGKPAFSKVDVLERDEQGNNTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 300

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS  V+QSFAEDGGY+RP KPVPGDCGYYLHAHQLVL HP+T+E VKI+APLPPILR
Sbjct: 301 NCLHSDSVNQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLDHPRTNEAVKIIAPLPPILR 360

Query: 361 THGESED 367
           THGE+E+
Sbjct: 361 THGEAEE 367

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy TrEMBL
Match: A0A1S3CPT2 (RNA pseudouridine synthase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503310 PE=4 SV=1)

HSP 1 Score: 676 bits (1743), Expect = 3.49e-244
Identity = 328/370 (88.65%), Postives = 348/370 (94.05%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           +LGRSFQVIGIPWPDLNDGLFYNDVVKP DSG SLI FYS KYKSSAPLEGWLQRI+NEQ
Sbjct: 2   LLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSCKYKSSAPLEGWLQRIKNEQ 61

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDG+VITDPETILRIGSE+VYRRLPWKEPDTP+ LE+LYEDDEMIALNKPSGLQVLPG
Sbjct: 62  ITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPSGLQVLPG 121

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSS QS S+S+ELHPVPVHRLGRGTSGILLCAKT+LARTQFAAYFA
Sbjct: 122 GVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTS V   RN+T EEGTKRKISKIYRALV GIIHDDEVS+DQPIGRM+YPGVAQGLYVA
Sbjct: 182 DGTSSV--IRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVA 241

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           T SGKPA SKVNVLERDEQG+HTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 242 TPSGKPACSKVNVLERDEQGEHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 301

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSEVVKIVAPLPPILR 360
           NCLHS +V+QSFAEDGGY RP KPVPGDCGYYLHAHQL+L+HPKT+EVVKIVAPLPPILR
Sbjct: 302 NCLHSEVVNQSFAEDGGYERPMKPVPGDCGYYLHAHQLILYHPKTNEVVKIVAPLPPILR 361

Query: 361 THGESEDAGN 370
           T  E+ED  N
Sbjct: 362 TRSEAEDFHN 369

[Close]

BLAST of Cp4.1LG13g09740 vs. ExPASy TrEMBL
Match: A0A1S3CPE8 (RNA pseudouridine synthase 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503310 PE=4 SV=1)

HSP 1 Score: 668 bits (1724), Expect = 3.69e-241
Identity = 328/378 (86.77%), Postives = 348/378 (92.06%), Query Frame = 0


Query: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60
           +LGRSFQVIGIPWPDLNDGLFYNDVVKP DSG SLI FYS KYKSSAPLEGWLQRI+NEQ
Sbjct: 2   LLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSCKYKSSAPLEGWLQRIKNEQ 61

Query: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120
           ITIDG+VITDPETILRIGSE+VYRRLPWKEPDTP+ LE+LYEDDEMIALNKPSGLQVLPG
Sbjct: 62  ITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPSGLQVLPG 121

Query: 121 GVFQQRTVLTQLQWWSSKQSSSVSKELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180
           GVFQQRTVLTQLQWWSS QS S+S+ELHPVPVHRLGRGTSGILLCAKT+LARTQFAAYFA
Sbjct: 122 GVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181

Query: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240
           DGTS V   RN+T EEGTKRKISKIYRALV GIIHDDEVS+DQPIGRM+YPGVAQGLYVA
Sbjct: 182 DGTSSV--IRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVA 241

Query: 241 TSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300
           T SGKPA SKVNVLERDEQG+HTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 242 TPSGKPACSKVNVLERDEQGEHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 301

Query: 301 NCLHSGLVDQSFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHHPKTSE--------VVKIV 360
           NCLHS +V+QSFAEDGGY RP KPVPGDCGYYLHAHQL+L+HPKT+E        VVKIV
Sbjct: 302 NCLHSEVVNQSFAEDGGYERPMKPVPGDCGYYLHAHQLILYHPKTNEKGFLVLLKVVKIV 361

Query: 361 APLPPILRTHGESEDAGN 370
           APLPPILRT  E+ED  N
Sbjct: 362 APLPPILRTRSEAEDFHN 377

[Close]

BLAST of Cp4.1LG13g09740 vs. TAIR 10
Match: AT3G52260.2 (Pseudouridine synthase family protein )

HSP 1 Score: 503.4 bits (1295), Expect = 1.5e-142
Identity = 252/365 (69.04%), Postives = 294/365 (80.55%), Query Frame = 0


Query: 7   QVIGIPWPDLNDGLFYNDVVKPSDSGMSLI-EFYSRKYKSSAPLEGWLQRIQNEQITIDG 66
           Q IG+PWP+LNDGL Y D +  S+S ++ + EFY  KYKSSAPL GW+QRIQN QI IDG
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDG 65

Query: 67  QVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPGGVFQQ 126
           +V+ DP T+LR GS++VY RLPWKEPDTPY LEVLYEDD++IALNKPSGLQVLPGG+FQQ
Sbjct: 66  EVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQ 125

Query: 127 RTVLTQLQWWSSKQSSSVS--KELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFADGT 186
           RTVLTQLQW   K  S +   +  HPVPVHRLGRGTSGILLCAKT+LA+T+ AAYFA+GT
Sbjct: 126 RTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGT 185

Query: 187 SCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATSS 246
           S VG + N   E GT RK+SKIYRAL  GI+ +DEV I QPIG +RYPGVAQGLYVA+  
Sbjct: 186 SLVG-SGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPE 245

Query: 247 GKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQPNCL 306
           GKPAFSKV VLERD +   +LV+VEIQSGRPHQIRIHL+ +GHPL+GDPLYVAGGQP C 
Sbjct: 246 GKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYVAGGQPKCF 305

Query: 307 HSGLVDQ--SFAEDGGYRRPAKPVPGDCGYYLHAHQLVLHH-PKTSEVVKIVAPLPPILR 366
              LVD   +FAEDGGYRRP + VPGDCGY+LHAHQ+ L +   T +VVKIVAPLPPIL+
Sbjct: 306 DPDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHKVVKIVAPLPPILQ 365

[Close]

BLAST of Cp4.1LG13g09740 vs. TAIR 10
Match: AT3G52260.3 (Pseudouridine synthase family protein )

HSP 1 Score: 461.1 bits (1185), Expect = 8.6e-130
Identity = 246/412 (59.71%), Postives = 290/412 (70.39%), Query Frame = 0


Query: 7   QVIGIPWPDLNDGLFYNDVVKPSDSGMSLI-EFYSRKYKSSAPLEGWL------------ 66
           Q IG+PWP+LNDGL Y D +  S+S ++ + EFY  KYKSSAPL G+L            
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGFLLFFFLYSSSTII 65

Query: 67  ------------------QRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPY 126
                             +   +  I IDG+V+ DP T+LR GS++VY RLPWKEPDTPY
Sbjct: 66  SFLLSILFNHLSFLGGFNESKTDRFIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDTPY 125

Query: 127 LLEVLYEDDEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVS--KELHPVPVH 186
            LEVLYEDD++IALNKPSGLQVLPGG+FQQRTVLTQLQW   K  S +   +  HPVPVH
Sbjct: 126 SLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVH 185

Query: 187 RLGRGTSGILLCAKTRLARTQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIYRALVAGI 246
           RLGRGTSGILLCAKT+LA+T+ AAYFA+GTS VG + N   E GT RK+SKIYRAL  GI
Sbjct: 186 RLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVG-SGNLDQECGTGRKLSKIYRALADGI 245

Query: 247 IHDDEVSIDQPIGRMRYPGVAQGLYVATSSGKPAFSKVNVLERDEQGKHTLVQVEIQSGR 306
           + +DEV I QPIG +RYPGVAQGLYVA+  GKPAFSKV VLERD +   +LV+VEIQSGR
Sbjct: 246 VEEDEVVIKQPIGVVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGR 305

Query: 307 PHQIRIHLSSIGHPLI-----------------GDPLYVAGGQPNCLHSGLVDQ--SFAE 366
           PHQIRIHL+ +GHPL+                 GDPLYVAGGQP C    LVD   +FAE
Sbjct: 306 PHQIRIHLAYMGHPLVEMTMFTGSECLRADQSAGDPLYVAGGQPKCFDPDLVDDAAAFAE 365

[Close]

BLAST of Cp4.1LG13g09740 vs. TAIR 10
Match: AT3G52260.1 (Pseudouridine synthase family protein )

HSP 1 Score: 399.8 bits (1026), Expect = 2.4e-111
Identity = 199/285 (69.82%), Postives = 232/285 (81.40%), Query Frame = 0


Query: 7   QVIGIPWPDLNDGLFYNDVVKPSDSGMSLI-EFYSRKYKSSAPLEGWLQRIQNEQITIDG 66
           Q IG+PWP+LNDGL Y D +  S+S ++ + EFY  KYKSSAPL GW+QRIQN QI IDG
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDG 65

Query: 67  QVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPGGVFQQ 126
           +V+ DP T+LR GS++VY RLPWKEPDTPY LEVLYEDD++IALNKPSGLQVLPGG+FQQ
Sbjct: 66  EVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQ 125

Query: 127 RTVLTQLQWWSSKQSSSVS--KELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFADGT 186
           RTVLTQLQW   K  S +   +  HPVPVHRLGRGTSGILLCAKT+LA+T+ AAYFA+GT
Sbjct: 126 RTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGT 185

Query: 187 SCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATSS 246
           S VG + N   E GT RK+SKIYRAL  GI+ +DEV I QPIG +RYPGVAQGLYVA+  
Sbjct: 186 SLVG-SGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPE 245

Query: 247 GKPAFSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPL 289
           GKPAFSKV VLERD +   +LV+VEIQSGRPHQIRIHL+ +GHPL
Sbjct: 246 GKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPL 289

[Close]

BLAST of Cp4.1LG13g09740 vs. TAIR 10
Match: AT5G51140.1 (Pseudouridine synthase family protein )

HSP 1 Score: 95.9 bits (237), Expect = 7.3e-20
Identity = 70/275 (25.45%), Postives = 132/275 (48.00%), Query Frame = 0


Query: 31  SGMSLIEFYSRKYKSSAPLEGWLQRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKE 90
           +G ++++ ++ ++K   P + ++  +++ +I +DG+++  P + +   S+ +   L   E
Sbjct: 72  TGKTIVDLFADEFK-GRPRDYYVGAVKSGRIKVDGEIV--PVSYIVKSSQKITHFLHRHE 131

Query: 91  PDTPYLLE---VLYEDDEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSKEL 150
           P  P +++   +L+++ +++ + KP+ + V P G +++ T++  L             +L
Sbjct: 132 P--PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGIL---------DAEHDL 191

Query: 151 HPV-PVHRLGRGTSGILLCAKTRLARTQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIY 210
             + P+HRL R  SG+L+ A+T      F      G                   + K Y
Sbjct: 192 GTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGG------------------MVKKRY 251

Query: 211 RALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATS------SGKPAFSKVNVLERDEQG 270
            A V G+  +DE+ +D  I      G +      +S       GKPA +K   +  D  G
Sbjct: 252 IAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI--DTNG 311

Query: 271 KHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYV 296
            H+LV  E  +GR HQIR+HL   GHP+  DPLY+
Sbjct: 312 THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYL 312

[Close]

BLAST of Cp4.1LG13g09740 vs. TAIR 10
Match: AT5G51140.2 (Pseudouridine synthase family protein )

HSP 1 Score: 95.9 bits (237), Expect = 7.3e-20
Identity = 70/275 (25.45%), Postives = 132/275 (48.00%), Query Frame = 0


Query: 31  SGMSLIEFYSRKYKSSAPLEGWLQRIQNEQITIDGQVITDPETILRIGSEVVYRRLPWKE 90
           +G ++++ ++ ++K   P + ++  +++ +I +DG+++  P + +   S+ +   L   E
Sbjct: 72  TGKTIVDLFADEFK-GRPRDYYVGAVKSGRIKVDGEIV--PVSYIVKSSQKITHFLHRHE 131

Query: 91  PDTPYLLE---VLYEDDEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSSSVSKEL 150
           P  P +++   +L+++ +++ + KP+ + V P G +++ T++  L             +L
Sbjct: 132 P--PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGIL---------DAEHDL 191

Query: 151 HPV-PVHRLGRGTSGILLCAKTRLARTQFAAYFADGTSCVGRNRNNTMEEGTKRKISKIY 210
             + P+HRL R  SG+L+ A+T      F      G                   + K Y
Sbjct: 192 GTLFPIHRLDRLVSGLLIIARTAAKADFFRQQIEGG------------------MVKKRY 251

Query: 211 RALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVATS------SGKPAFSKVNVLERDEQG 270
            A V G+  +DE+ +D  I      G +      +S       GKPA +K   +  D  G
Sbjct: 252 IAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI--DTNG 311

Query: 271 KHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYV 296
            H+LV  E  +GR HQIR+HL   GHP+  DPLY+
Sbjct: 312 THSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYL 312

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g09740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5M721	2.1e-141	69.04	RNA pseudouridine synthase 5 OS=Arabidopsis thaliana OX=3702 GN=At3g52260 PE=2 S...	[more]
Q0DST9	5.5e-129	62.20	RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g02...	[more]
P72970	2.1e-51	38.11	Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain ...	[more]
P33640	5.8e-30	32.18	Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (stra...	[more]
P74346	2.4e-28	30.07	Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain ...	[more]

BLAST of Cp4.1LG13g09740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551339.1	5.18e-279	100.00	RNA pseudouridine synthase 5 [Cucurbita pepo subsp. pepo]	[more]
XP_022938426.1	4.76e-275	98.39	RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata] >XP_022938427.1 RNA...	[more]
KAG6578753.1	6.16e-274	97.86	RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022994066.1	5.33e-272	97.32	RNA pseudouridine synthase 5 [Cucurbita maxima]	[more]
XP_038889122.1	7.61e-254	92.12	RNA pseudouridine synthase 5 isoform X1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG13g09740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FE06	2.31e-275	98.39	RNA pseudouridine synthase 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JY31	2.58e-272	97.32	RNA pseudouridine synthase 5 OS=Cucurbita maxima OX=3661 GN=LOC111489868 PE=4 SV...	[more]
A0A6J1BWD7	4.12e-247	89.10	RNA pseudouridine synthase 5 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3CPT2	3.49e-244	88.65	RNA pseudouridine synthase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503310 ...	[more]
A0A1S3CPE8	3.69e-241	86.77	RNA pseudouridine synthase 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503310 ...	[more]

BLAST of Cp4.1LG13g09740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52260.2	1.5e-142	69.04	Pseudouridine synthase family protein	[more]
AT3G52260.3	8.6e-130	59.71	Pseudouridine synthase family protein	[more]
AT3G52260.1	2.4e-111	69.82	Pseudouridine synthase family protein	[more]
AT5G51140.1	7.3e-20	25.45	Pseudouridine synthase family protein	[more]
AT5G51140.2	7.3e-20	25.45	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 106..282 e-value: 4.1E-25 score: 88.7
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 106..340 e-value: 2.69549E-49 score: 162.507
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 88..356 e-value: 7.4E-53 score: 181.3
None	No IPR available	PANTHER	PTHR21600:SF44	RNA PSEUDOURIDINE SYNTHASE 5	coord: 5..368
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 5..368
None	No IPR available	PROSITE	PS50889	S4	coord: 54..100 score: 8.892476
IPR006224	Pseudouridine synthase, RluC/RluD, conserved site	PROSITE	PS01129	PSI_RLU	coord: 152..166
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 54..110 e-value: 0.00475101 score: 33.377
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 97..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g09740.1	Cp4.1LG13g09740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding