Cp4.1LG03g17040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g17040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionethylene-responsive transcription factor CRF2-like
LocationCp4.1LG03: 12960735 .. 12961025 (+)
RNA-Seq ExpressionCp4.1LG03g17040
SyntenyCp4.1LG03g17040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTTTACCGCCGTTGATAAGGTGGCTGTGCAGCCGACAATAATTGTGCCGCACGTTGAAACCGATCAGCCCTGTTCGTGGGACGGCAGCTCCGGCGACGGCGATGGATTCCAGCGGCTGGGTTTCAGCTCCGATGCGTCGGAGGGCGGCGGAGAATGGTGGGTGGATCAAATTTTGGGAGATGATTATCGGAATGAAGATTTGAAGAGTAAGAGATTGAGGGTTTCTTCTTCGGTGGTTGTGCCACCAACGTTCAGTGGGTCTCCCAGCTATGGTGAATATTAA

mRNA sequence

ATGGCGGATTTTACCGCCGTTGATAAGGTGGCTGTGCAGCCGACAATAATTGTGCCGCACGTTGAAACCGATCAGCCCTGTTCGTGGGACGGCAGCTCCGGCGACGGCGATGGATTCCAGCGGCTGGGTTTCAGCTCCGATGCGTCGGAGGGCGGCGGAGAATGGTGGGTGGATCAAATTTTGGGAGATGATTATCGGAATGAAGATTTGAAGAGTAAGAGATTGAGGGTTTCTTCTTCGGTGGTTGTGCCACCAACGTTCAGTGGGTCTCCCAGCTATGGTGAATATTAA

Coding sequence (CDS)

ATGGCGGATTTTACCGCCGTTGATAAGGTGGCTGTGCAGCCGACAATAATTGTGCCGCACGTTGAAACCGATCAGCCCTGTTCGTGGGACGGCAGCTCCGGCGACGGCGATGGATTCCAGCGGCTGGGTTTCAGCTCCGATGCGTCGGAGGGCGGCGGAGAATGGTGGGTGGATCAAATTTTGGGAGATGATTATCGGAATGAAGATTTGAAGAGTAAGAGATTGAGGGTTTCTTCTTCGGTGGTTGTGCCACCAACGTTCAGTGGGTCTCCCAGCTATGGTGAATATTAA

Protein sequence

MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQILGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Homology
[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: XP_023526935.1 (ethylene-responsive transcription factor CRF2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202 bits (515), Expect = 8.53e-64
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI
Sbjct: 142 MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 201

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 96
           LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Sbjct: 202 LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 237

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: KAG7018968.1 (Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (507), Expect = 1.40e-62
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGF SD SEGGGEWWVDQI
Sbjct: 142 MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFGSDGSEGGGEWWVDQI 201

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 96
           LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Sbjct: 202 LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 237

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: KAG6582585.1 (Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (507), Expect = 1.40e-62
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGF SD SEGGGEWWVDQI
Sbjct: 142 MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFGSDGSEGGGEWWVDQI 201

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 96
           LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Sbjct: 202 LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 237

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: XP_022979590.1 (ethylene-responsive transcription factor CRF2-like [Cucurbita maxima])

HSP 1 Score: 197 bits (502), Expect = 9.10e-62
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSG GDGFQRLGFSSD SEGGGEWWVDQI
Sbjct: 146 MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGYGDGFQRLGFSSDGSEGGGEWWVDQI 205

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 96
           LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Sbjct: 206 LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 241

[Close]
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match: XP_038885243.1 (ethylene-responsive transcription factor RAP2-11-like [Benincasa hispida])

HSP 1 Score: 152 bits (385), Expect = 4.00e-44
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD T +DK AVQP+IIVPH+ETDQP SWD S  DGDGF++LGFSSD SE  G+WWVD++
Sbjct: 141 MADLTVIDKAAVQPSIIVPHIETDQPGSWDSS--DGDGFRQLGFSSDGSEATGDWWVDRM 200

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 95
           L DDY NE LKSKR RVSSSVVVPPTFSGSPSYGE
Sbjct: 201 LEDDYCNEGLKSKRFRVSSSVVVPPTFSGSPSYGE 233

[Close]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match: A0A6J1ITQ0 (ethylene-responsive transcription factor CRF2-like OS=Cucurbita maxima OX=3661 GN=LOC111479272 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 4.40e-62
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSG GDGFQRLGFSSD SEGGGEWWVDQI
Sbjct: 146 MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGYGDGFQRLGFSSDGSEGGGEWWVDQI 205

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 96
           LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY
Sbjct: 206 LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGEY 241

[Close]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match: A0A5D3D2L5 (Ethylene-responsive transcription factor ERF071-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004340 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 1.19e-39
Identity = 70/95 (73.68%), Postives = 76/95 (80.00%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD T +DK AVQP+IIVPHVETDQ  SWD S  DGDGF+ LGF SD SE  G+WWVD+I
Sbjct: 150 MADLTTIDKAAVQPSIIVPHVETDQSGSWDSS--DGDGFRPLGFCSDGSEVAGDWWVDRI 209

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 95
           L DD  NE L SKR RVSSSVVVPPTFSGSP+YGE
Sbjct: 210 LEDDDYNEGLMSKRFRVSSSVVVPPTFSGSPTYGE 242

[Close]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match: A0A1S3AW80 (ethylene-responsive transcription factor ERF071-like OS=Cucumis melo OX=3656 GN=LOC103483310 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 1.19e-39
Identity = 70/95 (73.68%), Postives = 76/95 (80.00%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD T +DK AVQP+IIVPHVETDQ  SWD S  DGDGF+ LGF SD SE  G+WWVD+I
Sbjct: 150 MADLTTIDKAAVQPSIIVPHVETDQSGSWDSS--DGDGFRPLGFCSDGSEVAGDWWVDRI 209

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 95
           L DD  NE L SKR RVSSSVVVPPTFSGSP+YGE
Sbjct: 210 LEDDDYNEGLMSKRFRVSSSVVVPPTFSGSPTYGE 242

[Close]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match: A0A0A0L8Z9 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G124760 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 4.77e-39
Identity = 69/95 (72.63%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1   MADFTAVDKVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVDQI 60
           MAD TA+DK AVQP+IIVPHVETD+  SWD S  DG+G + LGFSSD SE  G+WWVD+I
Sbjct: 150 MADLTAIDKAAVQPSIIVPHVETDRSGSWDSS--DGEGIRPLGFSSDGSEVAGDWWVDRI 209

Query: 61  LGDDYRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 95
           L DD  NE L SKR RVSSSVVVPPTFSGSP+YGE
Sbjct: 210 LEDDCYNEGLMSKRFRVSSSVVVPPTFSGSPTYGE 242

[Close]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match: A0A6J1D174 (ethylene-responsive transcription factor RAP2-11-like OS=Momordica charantia OX=3673 GN=LOC111016335 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 3.67e-36
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0 

Query: 1   MADFTAVD--KVAVQPTIIVPHVETDQPCSWDGSSGDGDGFQRLGFSSDASEGGGEWWVD 60
           MAD  A+D  KV VQP+IIVPHVETD+P SW   SG GDGF+ LG SSDA+EGGGEWWVD
Sbjct: 151 MADLKAMDMDKVGVQPSIIVPHVETDEPDSW--QSGSGDGFRHLGLSSDAAEGGGEWWVD 210

Query: 61  QILGDD-YRNEDLKSKRLRVSSSVVVPPTFSGSPSYGE 95
           ++L D  Y +E +K+KR RVSSSVVVPPTFSGS +YGE
Sbjct: 211 RLLEDGWYCDEGMKNKRFRVSSSVVVPPTFSGSQNYGE 246

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g17040 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g17040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526935.18.53e-64100.00ethylene-responsive transcription factor CRF2-like [Cucurbita pepo subsp. pepo][more]
KAG7018968.11.40e-6297.92Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperm... [more]
KAG6582585.11.40e-6297.92Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma s... [more]
XP_022979590.19.10e-6297.92ethylene-responsive transcription factor CRF2-like [Cucurbita maxima][more]
XP_038885243.14.00e-4476.84ethylene-responsive transcription factor RAP2-11-like [Benincasa hispida][more]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ITQ04.40e-6297.92ethylene-responsive transcription factor CRF2-like OS=Cucurbita maxima OX=3661 G... [more]
A0A5D3D2L51.19e-3973.68Ethylene-responsive transcription factor ERF071-like protein OS=Cucumis melo var... [more]
A0A1S3AW801.19e-3973.68ethylene-responsive transcription factor ERF071-like OS=Cucumis melo OX=3656 GN=... [more]
A0A0A0L8Z94.77e-3972.63AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G124760 PE=... [more]
A0A6J1D1743.67e-3669.39ethylene-responsive transcription factor RAP2-11-like OS=Momordica charantia OX=... [more]
BLAST of Cp4.1LG03g17040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g17040.1Cp4.1LG03g17040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity