Cp4.1LG03g06330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g06330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG03: 4169895 .. 4173242 (-)
RNA-Seq ExpressionCp4.1LG03g06330
SyntenyCp4.1LG03g06330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGAGCGACGGCGATGACGGGATAGGTTTGAAATTGATGAAATGTGCTGTGATTGAATGCTGCAAACCTATTTGGTCAATTAGCATTTCGTTTGGGGTTTTGATCTTGGGGGAGGATAATGGTATTAAGGTTGTTAATTTGAGGCGTTTTGTGAGAGGGCGTGGTCGAAGCATGAAGTTCATAAGCCATTTTTGCCTCATGGAGAAGCTTGTGGAGCTTCTGGAGGCACTGACTTGAATGGTGGCTCTCTCGTTGTTGGCAACAATGGATGCTTGGACGGAAACTTGGACAAACATTCGATTTCTGGTAAGCTAAGGGAGTTTTGTAACTTTTGTTTATTTGATATCTTCATAGTTTTTAAAGTAAGAATGATACAAAAACGTGTATTCTATGCATACATTTTAGTTATATTGGCTGTGTTTCCTGTTATTTGGAACTTTTGATCATGATTCTAATCCTAGTAGCCTTCTTTTAATTGCCTAAGATTGGTGTAAACGTAATGCGTTCGGTGTAACATCCTTGCACGCTGAATAATTTTGTTTTCGACCGAAGCAAGTGGACATTGGAGCTTTGAGTCCTTCAATCTCTTAGCCACTTGAAATGACTGTAACATTGATGGTTAATAGATTGCTGTCAATGAATCGAGTCCTACCTGACCTGTGTGATATCCCACATTGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGCGTGAAAACCTCTTTCTAGTAGACACATCTTAAAAATCTTGAGGGGAAGCCCAAAAGGAAAAGGCCAAAGAGGACAATATTTGCTAGCGGTGGGTTTTGGCCGTTACAAATGGTACCAGAGCCAGATACGGGGTGATGTGCCAGCGAGGAGGCTGTTCCCAAAAGGGGGTATAGACACGAGGCGGTGTGCCAGCAAGGACGCTGGGTCCCGAAGGGAGTGGATTTGGTGAGGGTCCCCACATCAATTGGAAAGGAACGAGTGCCTGCAAGGACGCTGGGCCCTGAAGGGGGGTGGATTGTGATATCCCACATCGGTGGGGGAGGAGAACGAAATACTTTTTATAAAAGTGTGGAAACTTCTTCCTAACAAACGCGTTTTAAAAACCTTGAGGGGAAGCCCAAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGATCGTTACATAGGGCTTGGATCATTACATACAGTGAAGTGAGTTTTTGTTGTGATCCCTTTAGTGTGTGCTTGGACTTTGATAGAATTTCTTACATTACAGTCGGAGTAGTTTTCTCCACGAGGACAACGTTCGTTACCATGGTGTTTACTTCCCTTGTTAACAATATTCATTTCTGTTAATCAGGAAGCTTATATGCGTATACAGTTTCCTGAAGTTTCATCGGCGTTGTTTTTCCGGTAAAATGCTTCTAGTCTACTTGCAAGGACACCCTGCCTCATGCACGCACTCGAATGTTCACTTTTATTCTTGGTTATTTGCAGGACATTTTCGTTCAAGGCTCCGTTAGATGATCTCGTCCAGAGTCGTGGCTTATCAGCTTCATGTTCTGCTTGAGTAAGAAACCGAGCTGTACTACAGGTTAATTATATGGACATATCTGTGATCAGATCCTTGCAATGTGGTCTCTAATTATTGCATTACAGTAAGTCGATACCAACGAAGTCGAGAACTGCAGTTTTCTCATACATCCATGGTGCATAAGATTTGAGAAGGCTCAGCTCTAAGTAGGTATGTTGTTTTTACTATTATCCTTTTTTCTATTGTTGAGAAATTGATGTTGCAGGTTTGAAATACGAAAAATGCTTCGAACATCCTTCCCGTCTTGCAGGTTTGAAATACAAATTGATCTTGGTGTGTTCCTTTGGGAATGGGTTTCCAAAGACACGGCAGAAATAGTTCAGGAATTACTAAATATGGGTCTATAGGGATGCATTCAATCCTCAAAAAAAGAGGATTTGATTGAGTACCGAGGAGTCAAAGACTTAATGTCAGACGACATGGATGTGCCAACATTGTGCCTCCACCTTTGAGGCGGAGGTTGATATATGGGGTCGCTCTCCGGTACGATATCTAAGAATGAGTCGCCAAGGACATGGGAGGATTCGTACCTCAATTGTACCCAGATGGATGGATGTTCGGGATGCTCGATTATAAAGTTGACTTATAGGCTGGTTCTCGATAAGTGTGCCCGAGCGAGCAGTGAAGGCTGATGACATCTTGGAACTTGGGTGAGCATCATGAAATGTGTGGGCTATGTTATTGAGAATCAAGATGACTAAGATGAAATGCGATGTTTCATTTGAAGGACGTTGACTTTGAGGAGGAGAAAGGTCGAGTCTTAGGACTTAGCCTAGAGTAGAGGCAAGTCAACTAGACTTGCAATGAAGTGAATGCGGCACGCATGGGCGACATGTATGCTTGAACAAAGCATAGTTTCCGCATGAGTTGTGTTTGGTCAATGAAGGAAAACCTCACCTAAGGTCTGACAAAACCGCAAAACTAAGCAAAAATTATAAGCGAGTCTGAGTTCCCCTTATTAAGACTCGTCACGATTGTGTCAGAATTATGACGCCGCACGGTTTGAAAAGTATGATCACGACACAAAACACGATCATATCATGTGGAGTTGAGTTTAATTGTGCAATCTAGTGCGAGTTCTTTGGTTTTTTACTTTTTCTGCTTTAATTCCATATTATCTTCGTTATTTTGCATCGATGGTACGTAACATGCTTCGAGCTGTCCATCGTTACGATCGTTCTCGCTACTCAGTTTTCTGTTCAAGAACGAATCTATTTAGCTTAGAGAAATTATCTGATATTGTTATTTGTCTTACTGAGATTTGTGGTATATGGCATAGGACCTTTGCTGTGCTTCCATGGCCTTGCTTGCATCCATGAGCTGCAAGACAAGCTCGGGGCTGAGAAACGAGCATGCTAGCTGTTGGTTCGAGTAGCAGAAAGAATACGGTATGCTTCCGACCTGCTATCATGAAAGATATACTCGTGCTTGGCCAATCTTCTCTATTCAATTTTGCGCGTAACTGATTTTGAACGATCTCATGATCGTTTTTAGTTTGATAGTGAAGTAGATGTTAATTTTATAGCATGTTTAACATCGAATAACTATCGTAGTTTGGTTTAGTGGCATCAAGTAAAGAGTGGTCGTTTACTTTCGATATCAAACTCCTATGAGTTACTTAACGAGTATCGTATGGTCTAATGATTCTTTCACTAAATTCACCTAACGAAGCAACAACTTTGTTTTTTAAGAGCTCATTCCTTAGTCACGTGTTGGTCTCAACATGTTGGGCCGAGAAAGTGTCCTATTTCCAACATCTCTTACC

mRNA sequence

ATGATGGCGTTTTGTGAGAGGGCGTGGTCGAAGCATGAAGTTCATAAGCCATTTTTGCCTCATGGAGAAGCTTGTGGAGCTTCTGGAGGCACTGACTTGAATGGTGGCTCTCTCGTTGTTGGCAACAATGGATGCTTGGACGGAAACTTGGACAAACATTCGATTTCTGCTTATATGCGTATACAGTTTCCTGAAGTTTCATCGGCGTTGTTTTTCCGGACATTTTCGTTCAAGGCTCCGTTAGATGATCTCGTCCAGAGTCGTGGCTTATCAGCTTCATGTTCTGCTTGATAAGTCGATACCAACGAAGTCGAGAACTGCAGTTTTCTCATACATCCATGGTGCATAAGATTTGAGAAGGCTCAGCTCTAAGTAGGACCTTTGCTGTGCTTCCATGGCCTTGCTTGCATCCATGAGCTGCAAGACAAGCTCGGGGCTGAGAAACGAGCATGCTAGCTGTTGGTTCGAGTAGCAGAAAGAATACGGTATGCTTCCGACCTGCTATCATGAAAGATATACTCGTGCTTGGCCAATCTTCTCTATTCAATTTTGCGCGTAACTGATTTTGAACGATCTCATGATCGTTTTTAGTTTGATAGTGAAGTAGATGTTAATTTTATAGCATGTTTAACATCGAATAACTATCGTAGTTTGGTTTAGTGGCATCAAGTAAAGAGTGGTCGTTTACTTTCGATATCAAACTCCTATGAGTTACTTAACGAGTATCGTATGGTCTAATGATTCTTTCACTAAATTCACCTAACGAAGCAACAACTTTGTTTTTTAAGAGCTCATTCCTTAGTCACGTGTTGGTCTCAACATGTTGGGCCGAGAAAGTGTCCTATTTCCAACATCTCTTACC

Coding sequence (CDS)

ATGATGGCGTTTTGTGAGAGGGCGTGGTCGAAGCATGAAGTTCATAAGCCATTTTTGCCTCATGGAGAAGCTTGTGGAGCTTCTGGAGGCACTGACTTGAATGGTGGCTCTCTCGTTGTTGGCAACAATGGATGCTTGGACGGAAACTTGGACAAACATTCGATTTCTGCTTATATGCGTATACAGTTTCCTGAAGTTTCATCGGCGTTGTTTTTCCGGACATTTTCGTTCAAGGCTCCGTTAGATGATCTCGTCCAGAGTCGTGGCTTATCAGCTTCATGTTCTGCTTGA

Protein sequence

MMAFCERAWSKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNGCLDGNLDKHSISAYMRIQFPEVSSALFFRTFSFKAPLDDLVQSRGLSASCSA
Homology
[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: KAG7036748.1 (hypothetical protein SDJN02_00368 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 2.08e-11
Identity = 36/71 (50.70%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 9   WSKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNGC-------------------LDGN 60
           ++K EVHK FLPHGE  G SGGTDLNGGSL VGNNG                    LDG 
Sbjct: 66  YAKREVHKTFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNGSLDGK 125

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: XP_022143309.1 (uncharacterized protein LOC111013209 isoform X2 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 3.09e-11
Identity = 37/70 (52.86%), Postives = 40/70 (57.14%), Query Frame = 0 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGN-------------------NGCLDGNL 60
           ++ EV K FLPHGE CG SGGTDLNGGSLVV N                   NG LDG L
Sbjct: 240 ARREVQKSFLPHGEVCGTSGGTDLNGGSLVVSNSGFNAQASRSDDAGSSAVCNGYLDGKL 299

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: XP_022143305.1 (uncharacterized protein LOC111013209 isoform X1 [Momordica charantia] >XP_022143306.1 uncharacterized protein LOC111013209 isoform X1 [Momordica charantia] >XP_022143307.1 uncharacterized protein LOC111013209 isoform X1 [Momordica charantia] >XP_022143308.1 uncharacterized protein LOC111013209 isoform X1 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 3.16e-11
Identity = 37/70 (52.86%), Postives = 40/70 (57.14%), Query Frame = 0 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGN-------------------NGCLDGNL 60
           ++ EV K FLPHGE CG SGGTDLNGGSLVV N                   NG LDG L
Sbjct: 240 ARREVQKSFLPHGEVCGTSGGTDLNGGSLVVSNSGFNAQASRSDDAGSSAVCNGYLDGKL 299

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: XP_038891880.1 (uncharacterized protein LOC120081240 isoform X1 [Benincasa hispida] >XP_038891885.1 uncharacterized protein LOC120081240 isoform X1 [Benincasa hispida] >XP_038891892.1 uncharacterized protein LOC120081240 isoform X1 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 1.50e-10
Identity = 37/69 (53.62%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNG------------------CLDGNLD 60
           +K EV K FLP+GE CG SGGTDLNGGSLVV +NG                  CLDG LD
Sbjct: 238 AKREVQKSFLPYGEVCGTSGGTDLNGGSLVVCSNGFNPQASRSEDAGSSACNGCLDGKLD 297

[Close]
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match: XP_038891899.1 (uncharacterized protein LOC120081240 isoform X2 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 1.89e-10
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNG------------------CLDGNLD 56
           +K EV K FLP+GE CG SGGTDLNGGSLVV +NG                  CLDG LD
Sbjct: 238 AKREVQKSFLPYGEVCGTSGGTDLNGGSLVVCSNGFNPQASRSEDAGSSACNGCLDGKLD 297

[Close]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match: A0A6J1CNY6 (uncharacterized protein LOC111013209 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013209 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.49e-11
Identity = 37/70 (52.86%), Postives = 40/70 (57.14%), Query Frame = 0 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGN-------------------NGCLDGNL 60
           ++ EV K FLPHGE CG SGGTDLNGGSLVV N                   NG LDG L
Sbjct: 240 ARREVQKSFLPHGEVCGTSGGTDLNGGSLVVSNSGFNAQASRSDDAGSSAVCNGYLDGKL 299

[Close]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match: A0A6J1CQE0 (uncharacterized protein LOC111013209 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013209 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.53e-11
Identity = 37/70 (52.86%), Postives = 40/70 (57.14%), Query Frame = 0 

Query: 10  SKHEVHKPFLPHGEACGASGGTDLNGGSLVVGN-------------------NGCLDGNL 60
           ++ EV K FLPHGE CG SGGTDLNGGSLVV N                   NG LDG L
Sbjct: 240 ARREVQKSFLPHGEVCGTSGGTDLNGGSLVVSNSGFNAQASRSDDAGSSAVCNGYLDGKL 299

[Close]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match: A0A6J1GAZ8 (uncharacterized protein LOC111452530 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452530 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.43e-10
Identity = 36/71 (50.70%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 9   WSKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNGC-------------------LDGN 60
           ++K EVHK FLPHGE  G SGGTDLNGGSL VGNNG                    LDG 
Sbjct: 234 YAKREVHKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNGSLDGK 293

[Close]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match: A0A6J1GAY1 (uncharacterized protein LOC111452530 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452530 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.53e-10
Identity = 36/71 (50.70%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 9   WSKHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNGC-------------------LDGN 60
           ++K EVHK FLPHGE  G SGGTDLNGGSL VGNNG                    LDG 
Sbjct: 234 YAKREVHKSFLPHGEVYGTSGGTDLNGGSLFVGNNGLNEHASRSDGAQSSAICNGSLDGK 293

[Close]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match: A0A1S3CF16 (uncharacterized protein LOC103500140 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500140 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.34e-10
Identity = 35/68 (51.47%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 11  KHEVHKPFLPHGEACGASGGTDLNGGSLVVGNNG------------------CLDGNLDK 60
           K EV K FLPHG+ CG SGGTDLNGGSLVV +NG                  CLDG  DK
Sbjct: 239 KREVQKSFLPHGDVCGTSGGTDLNGGSLVVSSNGFNLQASRSEDAGSSACNGCLDGKFDK 298

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g06330 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g06330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7036748.12.08e-1150.70hypothetical protein SDJN02_00368 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022143309.13.09e-1152.86uncharacterized protein LOC111013209 isoform X2 [Momordica charantia][more]
XP_022143305.13.16e-1152.86uncharacterized protein LOC111013209 isoform X1 [Momordica charantia] >XP_022143... [more]
XP_038891880.11.50e-1053.62uncharacterized protein LOC120081240 isoform X1 [Benincasa hispida] >XP_03889188... [more]
XP_038891899.11.89e-1055.38uncharacterized protein LOC120081240 isoform X2 [Benincasa hispida][more]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNY61.49e-1152.86uncharacterized protein LOC111013209 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CQE01.53e-1152.86uncharacterized protein LOC111013209 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1GAZ82.43e-1050.70uncharacterized protein LOC111452530 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GAY12.53e-1050.70uncharacterized protein LOC111452530 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3CF163.34e-1051.47uncharacterized protein LOC103500140 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Cp4.1LG03g06330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g06330.1Cp4.1LG03g06330.1mRNA