Cp4.1LG03g05030 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG03g05030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionflowering time control protein FCA
LocationCp4.1LG03: 5041232 .. 5046175 (-)
RNA-Seq ExpressionCp4.1LG03g05030
SyntenyCp4.1LG03g05030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTTATTTACAAAAATTAAAAAAATGTGTACCGGTGACTTGGAAATTAAAGGTCAAGATGGATAAGGGTATTTTCCGGATGATCTTATGCGGAAACCCGCACCGAAGTTTTCGTGGTCATCTCTCTGTCATCTCCCATCGTTTGTCTTCGTCTTCCACGTTCAATCGCCTCATCATTTTCAGGCCTCGACTAAATTTTTGCTGTTCGGTTCCAATTCTTGAAAACTGGAGAGCCACCGCCCGCACCGTCATGGCCCTCCGACGACCACTGCCCCAATTTCAACCACCAGTTTGATCCTTATGTTCAATACCCCAATCACCATCCGGACCCCTTTTTGGCCAGCCTAATTATCCCCCACAGTACTCGCACCATCCGCCACCACCGCCGCAGCACCAGCCTCCGTTCCAGCACCCGCCACCGCACCAGCAGAATAACTGGAACCATCCGGAGTTCCACAATCATCCCCCGGATTATCGTCCTCAGACGCACTTTAACGGCGAGATGAGTGAGGGGTTTGGAAACGGCGGTTTGAGGCCGAATTGTGGGAATCAGAATGCAAATTTGGGGCGTAAAAGGCCTAGAATCCATTCCGACAGAACGGTTCCTGCAGGTATTAAATGTTTGGTGAAACATGAAACGTCGAAAATAGCTTCTTTGGTTTTTTACAGTAATATAGAACGTGGAATGTATCTTGCACTTCTAATCCTAATTGAGCTAATTACCTGTCGTAGCTGAGCTTAAAATTCCCAGCTCAACCATGAACTGAACTTAAAGATTTCTCTTATAGATTGTAGAAAATGTAGCTCACATTGTTTTCGTTATTGGGCTTTTTTCAATTTAGAAGTTTTTCTTTGGCACTCTTAATTCATCAAAAGCTACTTTCAGCCAATTATCTTTCTTCAAGAATTCCAAGATTTTAAAGCAATAAGTCGAGATCTACTCTAAGAACATCAGAATACTCATTCTATTGTCCATCATTTAACATAAGGCACAGGGAAACTTTTTAGTTCATCAACTATCTGATATTGCTTTTCTTTGGAGCAATTTGTTTAGAAGGAATGTCATTGAGATATATATATTTCAGATCATGCTGAGGCTAGTGGCCTCGTGAAATTGTATGTTGCACAAGTTCCCTGAACAGGAACCGAAGAAGCTGTAAGTTTTAATTTCCACGGTTTGCCAATTCATATAACTTTGTAGGCAAGTAGTTCTTTGGGAAGGAAGATTGATGATCTTATCTCTTGTCATTGATCATAACTGAAAAATATTAAAAAATTTGTTTCAGATTCGTCCTTTGTTTGAAGTCCATGGAGATATTGTCGAGATCAACTGGTCAACAGAAAGGTCTTTTGTTCGTTTTAAATTTAATTCCATTTAATCCTTCTGCCGTTTAACGGGTTGATTAGAGTATCTATATGCTCACTTCTGATTTTCATACTTTTGGCGTACAATTATGTGGAATTGTCATGTTTTGGTTTGTTTACAATACTTTTGCACGGAGTGTTAGCGAAAACTGAGTCTGGTGACGACCTTGCCTTTTGGAAATGAGGAAGCACGACACTCTGGATAACACAATATATCCTGACAAGTACTTCGAGTTGAATCCAAAGTGAAGCTTCCCCTTGTCAATGCAAACTCTAATTTATTGGATCACTGTTATCTTATTCCTCCTTGATTTCTGAGAAACACTTATTAATTCTTGTTTATTTATTTATTTATGTTTAAGTTGACTTTATCACGCTTCTTGGATATCATCTTTAATCGAAGTTCTATGTCTGAAATGTCAGTTCTAAAAAACAGCTTCGGTATATATGAATAATCTTTTATTGTTAAGATCCAAATGGATTCTGGTTACTGCATCTGGCTTTATGCTGTCGTTCATAAAAATAACATTAAAGCAGATCTATGATTTCCTCTTCAGGTAGTTGCTTTGTGAATTACGCTACCTCGGTTGAAGCAGACAGGGCAATCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGTGAGTTATTGTTTATAGCCGATTGACGAACATATTATATGGAACACTTTTGATCTTATTTTGAAAGTACGTTTCCGATCAAAATAAATCAATAAATGACTAGTGAGTCACTTTTGCTTTTTCTTATAATATGTAGGTAACTCAATTGATGTCATAATAACTTTTCTTATTATTCTTTTTATAACAGGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAAGAGACCGCCTTGGTAAGTTTCTGGCATTTCTGACTTCCCGTTGCATCACTTCGACGTATTTCTTCTTTATCTGTGCTGTATTATTTGCGTCTTAGCAAGGCTACACTTTGCAAAGCAGTAGTTGAGCATTGTTGTCTACTTCGTTCTTGCATTCTATGTTTTGAGCATTGCATGACCAAGGTGCATATGATTCTGATTGCTTCCCATAAGAGGGAACCCCTTAATCAATTACCTCATCACTTGGCTCTTTTCAATATTTTTATTTTTATGTTTTATGTAGGGAACCCCTTAATAATTCAATTATCTCATCACCAACTCTCCTGAACCTTGTATGCTTCCCCTCCCCCGAGTCCGCTACCTCTCAACTTGAATGTTCATTTCTTTAAGGGTGGTGAACCAAAATGAGTAGTTCTATCAATGTCTTGATGCTATGCTCTAGCCTGCTGCCGATGATATCATCTGTTTCCCCGTATGAAAGTGACAAACCCTCTAGATGGATATCTCTTGCACTGCTGCGACGTGAGCTAACAATAATTAGTTTTTTATATCATGGCGTTAGGCGTTTATGTTTCATAAATGTGTCGAACAAACATTTTGACCATACATACGTTTGCATGATATACAGATATAATATAGGTTATTTGGCATGATAACTATTGTTTTATGTTTTTTGGTCTTGTTGGCTGTGTCAATATTCAATCGTTAAACATCTCTCTCTCTCTCAACAGAGGCAACAACATTTCAGACAGTCCGAGATTTGGTCATCCTCCTCAACCGTTTAGGTATATCGTGTACTCGGTTCCTTTTGTCTAATTTGATAACATAAATTGTTTTCTTGTTGTTTTAACCTTTTCTAGACCTGAGCCCCTCCTCTTGGTCCTCCTGCTGGAGGATGTTTTCCTAATAATTCATATCCTGGACAACAAAATTCTACAATCTTAGGATCACCAAGGAATGCTTCCCAAGAGGCATCCCATGCCCCTTTGGCTCCCAATGCTGTACAGAGACCACCCCCCAAATACAAGAACCTTCATCATCTTTGGTCAAATTTCATCTCAACCAATGCAAGCAACACAGCAAGCTTGTCAGCCTCCAATGTAGACTGATTTTTCTAAGATGCAGAATCAGGAGCGTTGTCAACAGCCCTAGCAGGATTCACATCTGCAGCAGAATTTACAGGTTCATGAGAATACGGTACGAAGGTGATCTGAATTATAAAATCCTTGTAGTTACATTGAAGTAAAAGATTATGACATGATTGACATCCTAAAAGGTTGAAACTTGACTGTGCGGAAAATTACTGAAGAGGTCATTAATGTCATATTGTCATGGTAACTTGTGTTTGTTCTCATTTATGTCCTTGTGCAGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTCTCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACACAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTAACCTATGAAAGTTTGGTAAGCTTTATGTCTTCATCCATCCGCCTTTCCACGGTTGTTTCCTATTTTGTGGTGCAATTTATGATAGATACCTTTGAAAATTGGTCCTTAGTGGGAGAAACCAGAGGAGTTTACCTTGTTTGAGCAACAATTGAGGCAGGAAAAGCTTAAAAAATCGAACCATCAGCTTCATTCTTCATTAGCAGGTCTCTCATCTCCAGAAGTGCTGCCTCAGCCAAATCTCGAGTCAAAAACTTGAAGTCCAATCTTCCTCAGCTGTACGAGTTAGAATTCATTCATACATATACATTTACATACATACATTTGCCCTTGCATTCACTATAACTGTTCCAGCTATATTTTGTCATGTCCAAAATCACTCTGAAATAGGATTTTAATCATTCAAAATCAGTTTTGATGGCATGAAAATCGTATTTTAAAGTTTAAAATCAAGCATCAAATTGATTGGATTGATTAAAAACATGATTCGAAGTGCAAATCACTCTCGAACGTGCAAATGACTTAGTTTGAGAATCCAATTTCTGCTCTCTCTAATTCTTTAATATACTCAATTTCTGCAGGAGTTGGATTGTATGCGACTTCAATCCAAAGAAAGTCCTGTTGTTATTCCAGCCTGTGCTTAACAATGTTGTCCAAGTTATTAGGAAGGTTATTTAAGAGAGTTCATCATGTTGGCAACTAACATTAATCCTTTAATGTCTAGCAATTACAATGTGAATTAGGATGGTAACGAAGACTACATGTTAGCTGCTCGGCTCGCAACTTAGACATTTGGATTGCTCGTGTAAAGCTGGTGTTCCATGTAGTCTATCAACTATCTATCCTGCAAACTCTTGGTGCAGTATATGGACCACCAAAAAATGTTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACATGTACGAGATTAAAGGACATTGTAAATTTAGTGTACTTGAGATATACGTCGAACTTCTGTTGATATAGTTGAGAGTATTCATTTGTAATCCGTTAAGCTCTGTATTTGAGGTCAACTTGATCTGTATATATCTTTTTATTAAGACGTTTTCAAATTGGTTAATCATAGTTTAGTGGTCTGCAGGTGCCTACAACAGTAGACGGACAATTGGGTACGGAGGTTGGTTCCCATCAACTGTTATGGAGTAATTTGTAATAAGTATTTAATTCCT

mRNA sequence

ATGTTTGTCAAGATGGATAAGGGTATTTTCCGGATGATCTTATGCGGAAACCCGCACCGAAGTTTTCGTGGTCATCTCTCTGTCATCTCCCATCGTTTGTCTTCGTCTTCCACGTTCAATCGCCTCATCATTTTCAGGCCTCGACTAAATTTTTGCTGTTCGGTTCCAATTCTTGAAAACTGGAGAGCCACCGCCCGCACCGTCATGGCCCTCCGACGACCACTGCCCCAATTTCAACCACCATACTCGCACCATCCGCCACCACCGCCGCAGCACCAGCCTCCGTTCCAGCACCCGCCACCGCACCAGCAGAATAACTGGAACCATCCGGAGTTCCACAATCATCCCCCGGATTATCGTCCTCAGACGCACTTTAACGGCGAGATGAGTGAGGGGTTTGGAAACGGCGGTTTGAGGCCGAATTGTGGGAATCAGAATGCAAATTTGGGGCGTAAAAGGCCTAGAATCCATTCCGACAGAACGGTTCCTGCAGATCATGCTGAGGCTAGTGGCCTCGTGAAATTATTCGTCCTTTGTTTGAAGTCCATGGAGATATTGTCGAGATCAACTGGTCAACAGAAAGGTAGTTGCTTTGTGAATTACGCTACCTCGGTTGAAGCAGACAGGGCAATCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAAGAGACCGCCTTGAGGCAACAACATTTCAGACAGTCCGAGATTTGGTCATCCTCCTCAACCGTTTAGCCCCTCCTCTTGGTCCTCCTGCTGGAGGATGTTTTCCTAATAATTCATATCCTGGACAACAAAATTCTACAATCTTAGGATCACCAAGGAATGCTTCCCAAGAGGCATCCCATGCCCCTTTGGCTCCCAATGCTGTACAGAGACCACCCCCCAAATACAAGAACCTTCATCATCTTTGGTCAAATTTCATCTCAACCAATGCAAGCAACACAGCAAGCTTGTCAGCCTCCAATCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTCTCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACACAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTAACCTATGAAAGTTTGTGGGAGAAACCAGAGGAGTTTACCTTGTTTGAGCAACAATTGAGGCAGGAAAAGCTTAAAAAATCGAACCATCAGCTTCATTCTTCATTAGCAGGTCTCTCATCTCCAGAAGTGCTGCCTCAGCCAAATCTCGAGTCAAAAACTTGAAGTCCAATCTTCCTCAGCTGAGTTGGATTGTATGCGACTTCAATCCAAAGAAAGTCCTGTTGTTATTCCAGCCTGTGCTTAACAATGTTGTCCAAGTTATTAGGAAGGTTATTTAAGAGAGTTCATCATGTTGGCAACTAACATTAATCCTTTAATGTCTAGCAATTACAATGTGAATTAGGATGGTAACGAAGACTACATGTTAGCTGCTCGGCTCGCAACTTAGACATTTGGATTGCTCGTGTAAAGCTGGTGTTCCATGTAGTCTATCAACTATCTATCCTGCAAACTCTTGGTGCAGTATATGGACCACCAAAAAATGTTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACATGTACGAGATTAAAGGACATTGTAAATTTAGTGTACTTGAGATATACGTCGAACTTCTGTTGATATAGTTGAGAGTATTCATTTGTAATCCGTTAAGCTCTGTATTTGAGGTCAACTTGATCTGTATATATCTTTTTATTAAGACGTTTTCAAATTGGTTAATCATAGTTTAGTGGTCTGCAGGTGCCTACAACAGTAGACGGACAATTGGGTACGGAGGTTGGTTCCCATCAACTGTTATGGAGTAATTTGTAATAAGTATTTAATTCCT

Coding sequence (CDS)

ATGTTTGTCAAGATGGATAAGGGTATTTTCCGGATGATCTTATGCGGAAACCCGCACCGAAGTTTTCGTGGTCATCTCTCTGTCATCTCCCATCGTTTGTCTTCGTCTTCCACGTTCAATCGCCTCATCATTTTCAGGCCTCGACTAAATTTTTGCTGTTCGGTTCCAATTCTTGAAAACTGGAGAGCCACCGCCCGCACCGTCATGGCCCTCCGACGACCACTGCCCCAATTTCAACCACCATACTCGCACCATCCGCCACCACCGCCGCAGCACCAGCCTCCGTTCCAGCACCCGCCACCGCACCAGCAGAATAACTGGAACCATCCGGAGTTCCACAATCATCCCCCGGATTATCGTCCTCAGACGCACTTTAACGGCGAGATGAGTGAGGGGTTTGGAAACGGCGGTTTGAGGCCGAATTGTGGGAATCAGAATGCAAATTTGGGGCGTAAAAGGCCTAGAATCCATTCCGACAGAACGGTTCCTGCAGATCATGCTGAGGCTAGTGGCCTCGTGAAATTATTCGTCCTTTGTTTGAAGTCCATGGAGATATTGTCGAGATCAACTGGTCAACAGAAAGGTAGTTGCTTTGTGAATTACGCTACCTCGGTTGAAGCAGACAGGGCAATCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAAGAGACCGCCTTGAGGCAACAACATTTCAGACAGTCCGAGATTTGGTCATCCTCCTCAACCGTTTAGCCCCTCCTCTTGGTCCTCCTGCTGGAGGATGTTTTCCTAATAATTCATATCCTGGACAACAAAATTCTACAATCTTAGGATCACCAAGGAATGCTTCCCAAGAGGCATCCCATGCCCCTTTGGCTCCCAATGCTGTACAGAGACCACCCCCCAAATACAAGAACCTTCATCATCTTTGGTCAAATTTCATCTCAACCAATGCAAGCAACACAGCAAGCTTGTCAGCCTCCAATCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTCTCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACACAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTAA

Protein sequence

MFVKMDKGIFRMILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNFCCSVPILENWRATARTVMALRRPLPQFQPPYSHHPPPPPQHQPPFQHPPPHQQNNWNHPEFHNHPPDYRPQTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVLCLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQTVRDLVILLNRLAPPLGPPAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPPPKYKNLHHLWSNFISTNASNTASLSASNPPSARGVQTSSGTPKSPRRRPSSRVEVPLECDWSEHSCPDGFKYYYNCIT
Homology
BLAST of Cp4.1LG03g05030 vs. ExPASy Swiss-Prot
Match: B8BCZ8 (Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 6.0e-14
Identity = 51/130 (39.23%), Postives = 64/130 (49.23%), Query Frame = 0

Query: 130 SEGFGNGGLRPNCGNQNANLGR-KRPRIHSDRTVPADHAEASGLVKLFVLCLKSME---- 189
           S+  G GG R   G +    G   R R  S R   +DH   +  VKLF+  +        
Sbjct: 78  SDHSGGGGYRSGGGGEYGEPGSGPRHRYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDD 137

Query: 190 ----------------ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMN 239
                           I  R TG+Q+G CFV YATS EA+RAI AL NQYT PG + P+ 
Sbjct: 138 VRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQ 197


HSP 2 Score: 43.5 bits (101), Expect = 6.3e-03
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 329 ASLSASNPPSARGVQTSS-GTPKS---------PRRRPSSRVEVPLECDWSEHSCPDGFK 386
           ++L+   P   + VQ+S+ G P +         P++  S    VPL C+W+EH+ P+GFK
Sbjct: 568 SNLNHQQPTQGQPVQSSNPGAPNAIIPSNINTIPQQATSP--AVPLTCNWTEHTSPEGFK 627

BLAST of Cp4.1LG03g05030 vs. ExPASy Swiss-Prot
Match: Q6K271 (Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=FCA PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.0e-14
Identity = 51/130 (39.23%), Postives = 64/130 (49.23%), Query Frame = 0

Query: 130 SEGFGNGGLRPNCGNQNANLGR-KRPRIHSDRTVPADHAEASGLVKLFVLCLKSME---- 189
           S+  G GG R   G +    G   R R  S R   +DH   +  VKLF+  +        
Sbjct: 78  SDHSGGGGYRSGGGGEYGEPGSGPRHRYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDD 137

Query: 190 ----------------ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMN 239
                           I  R TG+Q+G CFV YATS EA+RAI AL NQYT PG + P+ 
Sbjct: 138 VRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQ 197


HSP 2 Score: 43.5 bits (101), Expect = 6.3e-03
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 329 ASLSASNPPSARGVQTSS-GTPKS---------PRRRPSSRVEVPLECDWSEHSCPDGFK 386
           ++L+   P   + VQ+S+ G P +         P++  S    VPL C+W+EH+ P+GFK
Sbjct: 568 SNLNHQQPTQGQPVQSSNPGAPNAIIPSNINTIPQQATSP--AVPLTCNWTEHTSPEGFK 627

BLAST of Cp4.1LG03g05030 vs. ExPASy Swiss-Prot
Match: O04425 (Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 SV=3)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 185 ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTF 244
           I  + TGQQ+G CFV YATS +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F
Sbjct: 152 IKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEF 211

Query: 245 Q 246
           +
Sbjct: 212 K 212

BLAST of Cp4.1LG03g05030 vs. ExPASy Swiss-Prot
Match: A0JM51 (CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.6e-06
Identity = 37/120 (30.83%), Postives = 50/120 (41.67%), Query Frame = 0

Query: 163 PADHAEASGLVKLFVLCLKSME-------------------ILSRSTGQQKGSCFVNYAT 222
           PAD     G  KLFV  L   +                   +L    G  KG  FV +++
Sbjct: 125 PADSESRGGDRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSS 184

Query: 223 SVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQTVRDLVILLNRLAPPLGP 264
             EA  AI AL    T PG  + + VK+AD++++R      Q V  L I    LA P+ P
Sbjct: 185 HAEAQAAIQALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLALPISP 244

BLAST of Cp4.1LG03g05030 vs. ExPASy Swiss-Prot
Match: Q8GZ26 (RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.9e-06
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0

Query: 185 ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTF 244
           I  ++T   +G CF+   T  +AD+ I++  N+ T PG  +P+ VKYAD E +RLE   F
Sbjct: 44  IKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLF 103

BLAST of Cp4.1LG03g05030 vs. NCBI nr
Match: XP_008447475.2 (PREDICTED: flowering time control protein FCA [Cucumis melo])

HSP 1 Score: 357 bits (915), Expect = 3.10e-113
Identity = 237/551 (43.01%), Postives = 274/551 (49.73%), Query Frame = 0

Query: 27  SVISHRLSSSSTFNRLIIFRPRLNFCCSVPI---LENWRATARTVMAL---RRP------ 86
           S + H    SS  NRLII RP LNFCCS+P    LE    ++         RRP      
Sbjct: 93  SSLFHLPPLSSILNRLIILRPPLNFCCSIPFFAKLERHHPSSSGPSWPSDDRRPNFNHQF 152

Query: 87  ----------------LPQFQPPYSHHPPPPP-----QHQPPFQHPPP------------ 146
                            P + P Y  HPPPPP     QHQPPFQ  PP            
Sbjct: 153 DPYVQYPNHHPGPPFGQPNYPPQYPPHPPPPPPPPPTQHQPPFQPQPPPPPPPPHQHQLQ 212

Query: 147 ------HQQNNWNHPEFHNHPPDYRPQTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPR 206
                 HQQNNWNHPEFHNHPPDYRPQ HFNGEM+EGFGNGGLRPNCGN NANLGRKRPR
Sbjct: 213 HPFQHQHQQNNWNHPEFHNHPPDYRPQPHFNGEMTEGFGNGGLRPNCGNPNANLGRKRPR 272

Query: 207 IHSDRTVPADHAEASGLVKLFVL--------------------CLKSMEILSRSTGQQKG 266
            +S+RTVP DHAEASG VKL+V                      ++ + +  + TGQQ+G
Sbjct: 273 NYSNRTVPGDHAEASGHVKLYVAQVPRTGTEEAIRPLFEVHGDIVEIVILRDKITGQQQG 332

Query: 267 SCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRL------------EATT 326
           SCFV Y++SVEADRAI ALDNQYTFPGELTP+NVKYADSE+DRL            + TT
Sbjct: 333 SCFVKYSSSVEADRAIRALDNQYTFPGELTPINVKYADSEKDRLGVLEKLYVGSLNKNTT 392

Query: 327 FQTV---------------------------------RDLVI------------------ 385
            + +                                 RD+ +                  
Sbjct: 393 KREIEEVFSPYGFVEDIYIIRDDLKQSRGSAFVKYARRDMALAAIKALNGNFTMRGCDQP 452

BLAST of Cp4.1LG03g05030 vs. NCBI nr
Match: XP_022934398.1 (RNA-binding protein 33-like isoform X1 [Cucurbita moschata] >XP_022934399.1 RNA-binding protein 33-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 315 bits (808), Expect = 1.41e-103
Identity = 177/263 (67.30%), Postives = 181/263 (68.82%), Query Frame = 0

Query: 5   MDKGIFRMILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNFCCSVPILENWRAT 64
           MDKGIF+MILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNF  S     +W + 
Sbjct: 1   MDKGIFQMILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNFLESHRPAPSWPSD 60

Query: 65  AR-----------TVMALRRPLPQF-----QPPYSHHPPPPPQHQPPFQHPPPHQQ---- 124
                               P P F      P YSHHPPPPPQ QPPFQHPPPHQQ    
Sbjct: 61  DHCPNFNHQFDPYVQYPNHHPGPPFGQPNYPPEYSHHPPPPPQQQPPFQHPPPHQQPYQH 120

Query: 125 --NNWNHPEFHNHPPDYRPQTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTV 184
             NNWNHPEFHNHPPDYRPQ HFNGEMSE FG GGLR NCG+QNANLGRKRPRIHSDRTV
Sbjct: 121 QQNNWNHPEFHNHPPDYRPQPHFNGEMSERFGYGGLRANCGDQNANLGRKRPRIHSDRTV 180

Query: 185 PADHAEASGLVKLFVLCLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPG 244
           PA                              GSCFV YAT VEADRA SALDNQYTFPG
Sbjct: 181 PA------------------------------GSCFVKYATLVEADRATSALDNQYTFPG 233

BLAST of Cp4.1LG03g05030 vs. NCBI nr
Match: XP_023524604.1 (CUGBP Elav-like family member 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319 bits (818), Expect = 3.22e-99
Identity = 203/463 (43.84%), Postives = 239/463 (51.62%), Query Frame = 0

Query: 74  PLPQFQPPYSHH------PPPPPQHQPPFQHPPP--HQQNNWNHPEFHNHPPDYRPQTHF 133
           P PQ QPP+ H       PPPP QHQ P+QH  P  HQ+NNWNHPEFHN PPDYRP   F
Sbjct: 151 PPPQHQPPFQHQHQPPPPPPPPHQHQQPYQHQQPYQHQRNNWNHPEFHNPPPDYRPPPLF 210

Query: 134 NGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVL------- 193
           NG   E FGNGG+RPN GNQNANLGRKRPR    RTVPADHAEA G  KL+V        
Sbjct: 211 NGGAHEVFGNGGMRPNYGNQNANLGRKRPRNQPIRTVPADHAEAGGTAKLYVAQVPRTGT 270

Query: 194 -------------CLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELT 253
                         L+ + +  + TGQQ+GSCFV YATS+EADRAI ALDNQYTFPGE+T
Sbjct: 271 EEAIRPLFEVHGEILEIVILRDKLTGQQQGSCFVKYATSIEADRAIRALDNQYTFPGEMT 330

Query: 254 PMNVKYADSERDRL------------EATTFQTV-------------------------- 313
           P+NVKYAD E++RL            + TT + +                          
Sbjct: 331 PINVKYADGEKERLGVLEKLYVGSLNKNTTKREIEEVFSPYGFVEDIYIMRDELKQSRGC 390

Query: 314 -------RDLVI------------------LLNRLAPP---------------------- 373
                  RD+ +                  L+ RLA P                      
Sbjct: 391 AFVKYARRDMAMAAIEALNGKYTMRGCDQPLIVRLAEPKKPRIGEQRSNMSGSPKFGHHP 450

Query: 374 --------LGPPAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPPPKYKN 385
                   LGPPAGGCFPNNSYPGQQNS  LG P++ASQ  SHAP APN++Q+PPP+ + 
Sbjct: 451 HPFRPELPLGPPAGGCFPNNSYPGQQNSASLGPPKSASQVVSHAPFAPNSIQKPPPQIQE 510

BLAST of Cp4.1LG03g05030 vs. NCBI nr
Match: KAG7036630.1 (Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318 bits (815), Expect = 1.06e-98
Identity = 203/462 (43.94%), Postives = 238/462 (51.52%), Query Frame = 0

Query: 74  PLPQFQPPYSHH------PPPPPQHQPPFQHPPP--HQQNNWNHPEFHNHPPDYRPQTHF 133
           P PQ QPP+ H       PPPP QHQ P+QH  P  HQ+NNWNHPEFHN PPDYRP   F
Sbjct: 158 PPPQHQPPFQHQHQPPPPPPPPHQHQQPYQHQQPYQHQRNNWNHPEFHNPPPDYRPPPLF 217

Query: 134 NGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVL------- 193
           NG   E FGNGG+RPN GNQNANLGRKRPR    RTVPADHAEA G  KL+V        
Sbjct: 218 NGGTHEVFGNGGMRPNYGNQNANLGRKRPRNQPIRTVPADHAEAGGTAKLYVAQVPRTGT 277

Query: 194 -------------CLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELT 253
                         L+ + +  + TGQQ+GSCFV YATS+EADRAI ALDNQYTFPGE+T
Sbjct: 278 EEAIRPLFEVHGEILEIVILRDKLTGQQQGSCFVKYATSIEADRAIRALDNQYTFPGEMT 337

Query: 254 PMNVKYADSERDRL------------EATTFQTV-------------------------- 313
           P+NVKYAD E++RL            + TT + +                          
Sbjct: 338 PINVKYADGEKERLGVLEKLYVGSLNKNTTKREIEEVFSPYGFVEDIYIMRDELKQSRGC 397

Query: 314 -------RDLVI------------------LLNRLAPP---------------------- 373
                  RD+ +                  L+ RLA P                      
Sbjct: 398 AFVKYARRDMAMAAIEALNGKYTMRGCDQPLIVRLAEPKKPRIGEQRSNMSGSPKFGHHP 457

Query: 374 --------LGPPAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPPPKYKN 385
                   LGPPAGGCFPNN YPGQQNS  LG P++ASQ  SHAP  PN++Q+PPP+ + 
Sbjct: 458 HPFRPELPLGPPAGGCFPNNPYPGQQNSASLGPPKSASQVVSHAPFPPNSIQKPPPQIQE 517

BLAST of Cp4.1LG03g05030 vs. NCBI nr
Match: XP_022157018.1 (CUGBP Elav-like family member 4 [Momordica charantia])

HSP 1 Score: 311 bits (797), Expect = 3.93e-96
Identity = 203/472 (43.01%), Postives = 242/472 (51.27%), Query Frame = 0

Query: 76  PQFQPPYSHHPPPPPQHQ--PPFQ------HPPPH------QQNNWNHPEFHNHPPDYRP 135
           P + P Y H PPPPP HQ  PP+Q      HPPP       QQNNWN PEFHNH P+YR 
Sbjct: 134 PNYPPQYPHRPPPPPPHQHPPPYQNQHQHQHPPPQPHHHQPQQNNWNQPEFHNHQPEYRH 193

Query: 136 QTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVL--- 195
           Q HFNGE +EGFGNGGLRPNCGNQNANLGRKRPR +S+RTVP+DHAEA   VKL+V    
Sbjct: 194 QPHFNGEANEGFGNGGLRPNCGNQNANLGRKRPRNYSNRTVPSDHAEA---VKLYVAQVP 253

Query: 196 -----------------CLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFP 255
                             ++ + +  + TGQQ+GSCFV YATS+EADRAI ALDNQ+TFP
Sbjct: 254 RTGTEEAIRPLFEVHGDIVEIVILRDKITGQQQGSCFVKYATSIEADRAIGALDNQFTFP 313

Query: 256 GELTPMNVKYADSERDRL------------EATT----------FQTVRDLVI------- 315
           GE+ P+NVKYAD ER+RL            + TT          +  V D+ I       
Sbjct: 314 GEMAPINVKYADGERERLGVLEKLYVGSLNKNTTKREIEEVFSPYGFVEDIYIMRDELKQ 373

Query: 316 ----------------------------------LLNRLA-------------------- 375
                                             L+ RLA                    
Sbjct: 374 SRGCAFVKYARREMAMAAIKALNGNYTIRGCDQPLIVRLADPKKSRVGEQRSNSMSGSPN 433

Query: 376 -----------PPLGPPAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPP 385
                      PPLG PAGGCFPNN YP QQNS  LG  +NASQ AS+APLAPN +Q+  
Sbjct: 434 FGHHPQPFRPEPPLGAPAGGCFPNNLYPPQQNSASLGPAKNASQVASNAPLAPNTIQKAH 493

BLAST of Cp4.1LG03g05030 vs. ExPASy TrEMBL
Match: A0A1S3BIF0 (flowering time control protein FCA OS=Cucumis melo OX=3656 GN=LOC103489911 PE=4 SV=1)

HSP 1 Score: 357 bits (915), Expect = 1.50e-113
Identity = 237/551 (43.01%), Postives = 274/551 (49.73%), Query Frame = 0

Query: 27  SVISHRLSSSSTFNRLIIFRPRLNFCCSVPI---LENWRATARTVMAL---RRP------ 86
           S + H    SS  NRLII RP LNFCCS+P    LE    ++         RRP      
Sbjct: 93  SSLFHLPPLSSILNRLIILRPPLNFCCSIPFFAKLERHHPSSSGPSWPSDDRRPNFNHQF 152

Query: 87  ----------------LPQFQPPYSHHPPPPP-----QHQPPFQHPPP------------ 146
                            P + P Y  HPPPPP     QHQPPFQ  PP            
Sbjct: 153 DPYVQYPNHHPGPPFGQPNYPPQYPPHPPPPPPPPPTQHQPPFQPQPPPPPPPPHQHQLQ 212

Query: 147 ------HQQNNWNHPEFHNHPPDYRPQTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPR 206
                 HQQNNWNHPEFHNHPPDYRPQ HFNGEM+EGFGNGGLRPNCGN NANLGRKRPR
Sbjct: 213 HPFQHQHQQNNWNHPEFHNHPPDYRPQPHFNGEMTEGFGNGGLRPNCGNPNANLGRKRPR 272

Query: 207 IHSDRTVPADHAEASGLVKLFVL--------------------CLKSMEILSRSTGQQKG 266
            +S+RTVP DHAEASG VKL+V                      ++ + +  + TGQQ+G
Sbjct: 273 NYSNRTVPGDHAEASGHVKLYVAQVPRTGTEEAIRPLFEVHGDIVEIVILRDKITGQQQG 332

Query: 267 SCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRL------------EATT 326
           SCFV Y++SVEADRAI ALDNQYTFPGELTP+NVKYADSE+DRL            + TT
Sbjct: 333 SCFVKYSSSVEADRAIRALDNQYTFPGELTPINVKYADSEKDRLGVLEKLYVGSLNKNTT 392

Query: 327 FQTV---------------------------------RDLVI------------------ 385
            + +                                 RD+ +                  
Sbjct: 393 KREIEEVFSPYGFVEDIYIIRDDLKQSRGSAFVKYARRDMALAAIKALNGNFTMRGCDQP 452

BLAST of Cp4.1LG03g05030 vs. ExPASy TrEMBL
Match: A0A6J1F7J8 (RNA-binding protein 33-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441586 PE=4 SV=1)

HSP 1 Score: 315 bits (808), Expect = 6.85e-104
Identity = 177/263 (67.30%), Postives = 181/263 (68.82%), Query Frame = 0

Query: 5   MDKGIFRMILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNFCCSVPILENWRAT 64
           MDKGIF+MILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNF  S     +W + 
Sbjct: 1   MDKGIFQMILCGNPHRSFRGHLSVISHRLSSSSTFNRLIIFRPRLNFLESHRPAPSWPSD 60

Query: 65  AR-----------TVMALRRPLPQF-----QPPYSHHPPPPPQHQPPFQHPPPHQQ---- 124
                               P P F      P YSHHPPPPPQ QPPFQHPPPHQQ    
Sbjct: 61  DHCPNFNHQFDPYVQYPNHHPGPPFGQPNYPPEYSHHPPPPPQQQPPFQHPPPHQQPYQH 120

Query: 125 --NNWNHPEFHNHPPDYRPQTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTV 184
             NNWNHPEFHNHPPDYRPQ HFNGEMSE FG GGLR NCG+QNANLGRKRPRIHSDRTV
Sbjct: 121 QQNNWNHPEFHNHPPDYRPQPHFNGEMSERFGYGGLRANCGDQNANLGRKRPRIHSDRTV 180

Query: 185 PADHAEASGLVKLFVLCLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPG 244
           PA                              GSCFV YAT VEADRA SALDNQYTFPG
Sbjct: 181 PA------------------------------GSCFVKYATLVEADRATSALDNQYTFPG 233

BLAST of Cp4.1LG03g05030 vs. ExPASy TrEMBL
Match: A0A6J1DSB0 (CUGBP Elav-like family member 4 OS=Momordica charantia OX=3673 GN=LOC111023844 PE=4 SV=1)

HSP 1 Score: 311 bits (797), Expect = 1.90e-96
Identity = 203/472 (43.01%), Postives = 242/472 (51.27%), Query Frame = 0

Query: 76  PQFQPPYSHHPPPPPQHQ--PPFQ------HPPPH------QQNNWNHPEFHNHPPDYRP 135
           P + P Y H PPPPP HQ  PP+Q      HPPP       QQNNWN PEFHNH P+YR 
Sbjct: 134 PNYPPQYPHRPPPPPPHQHPPPYQNQHQHQHPPPQPHHHQPQQNNWNQPEFHNHQPEYRH 193

Query: 136 QTHFNGEMSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVL--- 195
           Q HFNGE +EGFGNGGLRPNCGNQNANLGRKRPR +S+RTVP+DHAEA   VKL+V    
Sbjct: 194 QPHFNGEANEGFGNGGLRPNCGNQNANLGRKRPRNYSNRTVPSDHAEA---VKLYVAQVP 253

Query: 196 -----------------CLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFP 255
                             ++ + +  + TGQQ+GSCFV YATS+EADRAI ALDNQ+TFP
Sbjct: 254 RTGTEEAIRPLFEVHGDIVEIVILRDKITGQQQGSCFVKYATSIEADRAIGALDNQFTFP 313

Query: 256 GELTPMNVKYADSERDRL------------EATT----------FQTVRDLVI------- 315
           GE+ P+NVKYAD ER+RL            + TT          +  V D+ I       
Sbjct: 314 GEMAPINVKYADGERERLGVLEKLYVGSLNKNTTKREIEEVFSPYGFVEDIYIMRDELKQ 373

Query: 316 ----------------------------------LLNRLA-------------------- 375
                                             L+ RLA                    
Sbjct: 374 SRGCAFVKYARREMAMAAIKALNGNYTIRGCDQPLIVRLADPKKSRVGEQRSNSMSGSPN 433

Query: 376 -----------PPLGPPAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPP 385
                      PPLG PAGGCFPNN YP QQNS  LG  +NASQ AS+APLAPN +Q+  
Sbjct: 434 FGHHPQPFRPEPPLGAPAGGCFPNNLYPPQQNSASLGPAKNASQVASNAPLAPNTIQKAH 493

BLAST of Cp4.1LG03g05030 vs. ExPASy TrEMBL
Match: A0A0A0LBT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536140 PE=4 SV=1)

HSP 1 Score: 274 bits (700), Expect = 2.84e-84
Identity = 173/398 (43.47%), Postives = 203/398 (51.01%), Query Frame = 0

Query: 129 MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVL---------- 188
           M+EGFGNGGLRPNCGN N  LGRKRPR +S+RTVP DHAEASG VKL+V           
Sbjct: 1   MTEGFGNGGLRPNCGNPNPILGRKRPRNYSNRTVPGDHAEASGHVKLYVAQVPRTGTEEA 60

Query: 189 ----------CLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMN 248
                      ++ + +  + TGQQ+GSCFV Y+TSVEADRAI ALDNQYTFPGELTP+N
Sbjct: 61  IRPLFEVHGDIVEIVILRDKITGQQQGSCFVKYSTSVEADRAIRALDNQYTFPGELTPIN 120

Query: 249 VKYADSERDRL------------EATTFQTV----------------------------- 308
           VKYADSE+DRL            + TT + +                             
Sbjct: 121 VKYADSEKDRLGVLEKLYVGCLNKNTTKREIEEVFSPYGFVEDIYIIRDDLKQSRGSAFV 180

Query: 309 ----RDLVI------------------LLNRLAPPLGP---------------------- 368
               RD+ +                  L+ RLA P  P                      
Sbjct: 181 KYARRDMALAAIKALNGNFTMRGCDQPLIVRLADPKKPRIGEQRSTNVSGSPRFGHHPQP 240

Query: 369 --------PAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPPPKYKNLHH 385
                   PAGGCFPNNSYPGQQNST LG PRNASQ ASH P APN++Q+P P+ +    
Sbjct: 241 FRPEPPVGPAGGCFPNNSYPGQQNSTSLGPPRNASQVASHTPFAPNSMQKPSPQTQEPSS 300

BLAST of Cp4.1LG03g05030 vs. ExPASy TrEMBL
Match: A0A5A7T550 (Flowering time control protein FCA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00580 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 6.27e-83
Identity = 170/398 (42.71%), Postives = 202/398 (50.75%), Query Frame = 0

Query: 129 MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVL---------- 188
           M+EGFGNGGLRPNCGN NANLGRKRPR +S+RTVP DHAEASG VKL+V           
Sbjct: 1   MTEGFGNGGLRPNCGNPNANLGRKRPRNYSNRTVPGDHAEASGHVKLYVAQVPRTGTEEA 60

Query: 189 ----------CLKSMEILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMN 248
                      ++ + +  + TGQQ+GSCFV Y++SVEADRAI ALDNQYTFPGELTP+N
Sbjct: 61  IRPLFEVHGDIVEIVILRDKITGQQQGSCFVKYSSSVEADRAIRALDNQYTFPGELTPIN 120

Query: 249 VKYADSERDRL------------EATTFQTV----------------------------- 308
           VKYADSE+DRL            + TT + +                             
Sbjct: 121 VKYADSEKDRLGVLEKLYVGSLNKNTTKREIEEVFSPYGFVEDIYIIRDDLKQSRGSAFV 180

Query: 309 ----RDLVI------------------LLNRLAPPLGP---------------------- 368
               RD+ +                  L+ RLA P  P                      
Sbjct: 181 KYARRDMALAAIKALNGNFTMRGCDQPLIVRLADPKKPRIGEQRSSNVSGSPRFGHHPQP 240

Query: 369 --------PAGGCFPNNSYPGQQNSTILGSPRNASQEASHAPLAPNAVQRPPPKYKNLHH 385
                   PAGGCFPNNSYPGQQNS  LG PRNASQ ASH P APN++Q+P P+ +    
Sbjct: 241 FRPEPPVGPAGGCFPNNSYPGQQNSPSLGPPRNASQAASHTPFAPNSIQKPSPQIQEPPS 300

BLAST of Cp4.1LG03g05030 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-13
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 185 ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTF 244
           I  + TGQQ+G CFV YATS +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F
Sbjct: 152 IKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEF 211

Query: 245 Q 246
           +
Sbjct: 212 K 212


HSP 2 Score: 40.0 bits (92), Expect = 4.9e-03
Identity = 20/49 (40.82%), Postives = 28/49 (57.14%), Query Frame = 0

Query: 340 RGVQTSSGTPKSPRRRPSSRVEV---PLECDWSEHSCPDGFKYYYNCIT 386
           R   T+  TP S  +  +  V      ++C W+EH+ PDGFKYYYN +T
Sbjct: 566 RVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLT 614

BLAST of Cp4.1LG03g05030 vs. TAIR 10
Match: AT4G16280.3 (RNA binding;abscisic acid binding )

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-13
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 185 ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTF 244
           I  + TGQQ+G CFV YATS +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F
Sbjct: 152 IKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEF 211

Query: 245 Q 246
           +
Sbjct: 212 K 212

BLAST of Cp4.1LG03g05030 vs. TAIR 10
Match: AT4G16280.4 (RNA binding;abscisic acid binding )

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-13
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 185 ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTF 244
           I  + TGQQ+G CFV YATS +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F
Sbjct: 77  IKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEF 136

Query: 245 Q 246
           +
Sbjct: 137 K 137


HSP 2 Score: 40.0 bits (92), Expect = 4.9e-03
Identity = 20/49 (40.82%), Postives = 28/49 (57.14%), Query Frame = 0

Query: 340 RGVQTSSGTPKSPRRRPSSRVEV---PLECDWSEHSCPDGFKYYYNCIT 386
           R   T+  TP S  +  +  V      ++C W+EH+ PDGFKYYYN +T
Sbjct: 491 RVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLT 539

BLAST of Cp4.1LG03g05030 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.6e-07
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0

Query: 185 ILSRSTGQQKGSCFVNYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTF 244
           I  ++T   +G CF+   T  +AD+ I++  N+ T PG  +P+ VKYAD E +RLE   F
Sbjct: 44  IKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLF 103

BLAST of Cp4.1LG03g05030 vs. TAIR 10
Match: AT2G47310.1 (flowering time control protein-related / FCA gamma-related )

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-07
Identity = 103/433 (23.79%), Postives = 165/433 (38.11%), Query Frame = 0

Query: 74  PLPQFQPPYSHHPPPPPQHQPPFQHPPPHQQNNWNHPEFHNHPP----DYR-PQTHFNGE 133
           P+P +   Y++    PP HQ    HPPP   ++     FH +P     D R  Q H++G+
Sbjct: 15  PVPYYHNNYNN----PPHHQ---IHPPPPPHHHIAAVGFHKYPQNDNRDQRFNQPHYSGQ 74

Query: 134 ---MSEGFGNGGLRP----NCGNQNANLGRKRPRIHSDRTVPADHAEASGLVKLFVLCLK 193
              M     N    P     CG  +    R +           D+A+ S + KL+V  + 
Sbjct: 75  QQNMIVDQSNNAPPPFPPSPCGGSSLRKRRSQS--------ATDNADGS-IAKLYVAPIS 134

Query: 194 S-----------------MEIL---SRSTGQQKGSCFVNYATSVEADRAISALDNQYTFP 253
                              EI+    + TG++   CF+ Y    E + AI+AL  Q+TFP
Sbjct: 135 KTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAALTEQFTFP 194

Query: 254 GELTPMNVKYADSERDRL-------------------EATT----------FQTVRDLVI 313
           GE+ P+ V++A++ER+R+                   + TT          +  + D+ +
Sbjct: 195 GEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYM 254

Query: 314 LLN----------------RLAPPLGPPAGGCF---------------PNNSYPGQQNST 373
            L+                 +A        G F               P     G+Q ST
Sbjct: 255 ALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQRST 314

Query: 374 ILGSPRNASQEASHAPLAPNAVQRPPPKYKN---------LHHLWSNFIS-TNASNTASL 386
                 N      H    PN   +P P+++N          HH +S+  +     NT ++
Sbjct: 315 F-----NTPPAMQH--FDPNWHSQPYPQWENKEPAPPRVVQHHDFSSQPNHFPHQNTQAV 374

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B8BCZ86.0e-1439.23Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA... [more]
Q6K2716.0e-1439.23Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=F... [more]
O044251.3e-1155.74Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 S... [more]
A0JM514.6e-0630.83CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1[more]
Q8GZ267.9e-0640.00RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_008447475.23.10e-11343.01PREDICTED: flowering time control protein FCA [Cucumis melo][more]
XP_022934398.11.41e-10367.30RNA-binding protein 33-like isoform X1 [Cucurbita moschata] >XP_022934399.1 RNA-... [more]
XP_023524604.13.22e-9943.84CUGBP Elav-like family member 6 [Cucurbita pepo subsp. pepo][more]
KAG7036630.11.06e-9843.94Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_022157018.13.93e-9643.01CUGBP Elav-like family member 4 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A1S3BIF01.50e-11343.01flowering time control protein FCA OS=Cucumis melo OX=3656 GN=LOC103489911 PE=4 ... [more]
A0A6J1F7J86.85e-10467.30RNA-binding protein 33-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A6J1DSB01.90e-9643.01CUGBP Elav-like family member 4 OS=Momordica charantia OX=3673 GN=LOC111023844 P... [more]
A0A0A0LBT62.84e-8443.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536140 PE=4 SV=1[more]
A0A5A7T5506.27e-8342.71Flowering time control protein FCA OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
Match NameE-valueIdentityDescription
AT4G16280.28.9e-1355.74RNA binding;abscisic acid binding [more]
AT4G16280.38.9e-1355.74RNA binding;abscisic acid binding [more]
AT4G16280.48.9e-1355.74RNA binding;abscisic acid binding [more]
AT1G03457.15.6e-0740.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G47310.17.3e-0723.79flowering time control protein-related / FCA gamma-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 169..242
e-value: 3.1E-10
score: 41.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 183..222
e-value: 1.1E-5
score: 25.2
NoneNo IPR availableGENE3D2.20.70.10coord: 347..385
e-value: 1.6E-5
score: 26.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..353
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..297
NoneNo IPR availablePANTHERPTHR15241:SF308FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1coord: 329..385
NoneNo IPR availablePANTHERPTHR15241:SF308FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1coord: 185..242
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 185..242
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 329..385
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 186..239

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g05030.1Cp4.1LG03g05030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding