Cp4.1LG03g04470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g04470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	arabinogalactan peptide 23-like
Location	Cp4.1LG03: 5520567 .. 5520752 (+)
RNA-Seq Expression	Cp4.1LG03g04470
Synteny	Cp4.1LG03g04470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

mRNA sequence

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGACGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGTGCCGCTGCCGGCCTTCCAGCAATCGGCTCTGTCATTGGCGCTTCGTTGCTCTCTGTCGCGGCCTACTACCTGCAATGA

Protein sequence

MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ

Homology

[Close]

BLAST of Cp4.1LG03g04470 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 107 bits (266), Expect = 7.71e-29
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: XP_038905644.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 105 bits (261), Expect = 4.47e-28
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATVSA VAHDEALAPAPGPSSGAA GLPAIGSVIGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: KAG7018086.1 (hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 1.57e-27
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2   EMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ 61
            MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ
Sbjct: 47  RMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYLQ 106

[Close]

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (250), Expect = 2.13e-26
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 5.05e-25
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 3.73e-29
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.44e-25
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEM KI CA+LFAAATVSAVVAHDEA APAPGP+SGA  GLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. ExPASy TrEMBL
Match: A0A5A7U280 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00270 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.96e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACA+LFAAATVSA VA D+ALAPAPGPSSGAA GLPAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAILFAAATVSAAVAEDKALAPAPGPSSGAAIGLPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.14e-23
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIACAVLFAAATV+AVVA DEALAPAPGPSSGA  G+PAIGS++GASLLS AAYYL
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.92e-22
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKI CAVLFAAATV+A VA +EA APAPGP+S A  GLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVAAYYL 60
          MEMKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A LPA+GS++GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Cp4.1LG03g04470 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAAAGLPAIGSVIGASLLSVAAYY 60
          MEMKKIAC V+FAAA+++AV+A  E  APAPGP +SGA+  +PA+GS++GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMA-AEVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g04470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	1.5e-12	66.67	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Cp4.1LG03g04470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983304.1	7.71e-29	98.36	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_038905644.1	4.47e-28	96.72	arabinogalactan protein 23-like [Benincasa hispida]	[more]
KAG7018086.1	1.57e-27	98.33	hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7019275.1	2.13e-26	90.16	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022998512.1	5.05e-25	86.89	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG03g04470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6Y9	3.73e-29	98.36	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4...	[more]
A0A6J1K873	2.44e-25	86.89	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4...	[more]
A0A5A7U280	3.96e-24	86.67	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0L9U8	1.14e-23	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1	[more]
A0A6J1HQG2	3.92e-22	81.97	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4...	[more]

BLAST of Cp4.1LG03g04470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.1e-13	66.67	arabinogalactan protein 23	[more]
AT2G41905.1	1.5e-10	63.93	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..61
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g04470.1	Cp4.1LG03g04470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane