Cp4.1LG01g15470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g15470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 9244312 .. 9245501 (+)
RNA-Seq ExpressionCp4.1LG01g15470
SyntenyCp4.1LG01g15470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTACCTCTTCGCCACCACGTCCGACAGTATCCCTCCGTACGGCCTCGAAAAAAGGTTAGCCAGCCCAAAGCTCGCCGCTATGATCCCTGCCGTGTGCAGGTTCAAATTGAATCTATCGTAGAAATAATTCGCTATTATATTGTCAATCGTTAATTCCACCCCAAAACAGTACCCATAAGTCAATGCCAAAATCCATCCCCTGTAATTCTTCGCCCCATTGTACACCACCGTTGAAAATTTGTCTTTTGCCTTCTCCCCTGTTTTCTGCAGCTCCCCGAAGTTCCCGTCCGGCGTGTCCTCGCCGAGCATCAGAACCGCAAAGGCCGAAAGCGTTTGGAAAATCGCTGGGATGAAGAAAGCGATTCTCCACGCAGTGAATTTCGTTGCGCCGATGTGCTCGATGATGGCGAACACGTACGGCATAATCAGCTGTGTTGCGCCGCCGCCTAAGTTCCCCCAACCGCCGGCTACGCCATTGGCGGTGCCGACGACGGTGGAGGAGAACATTGAGCTCATCCAGAATTGGGTCGAGACGAATGTGGCGAGAGAGAATCCAGTGAAGAATCGAACGAGAAAAAACGAAGCAGGGGATGAGGCTATGGAGGTTAAATAAACAGCCGGCGAGGTTATGAGGATGAGTGAGGCAGAGGCGAGACGTGGTCCGACTAAATCACAGGCGGAACCCATCATGATACGGGCAAAGACAGCGCCGGAGACGGAGGCAATTCCGGCGTTCCCAATGTCAGTGTCGGTTAAATTAAGATTGTCGCGGATCACCGGAAGCAGAGGAGCTGCCGCAAAACTTGAAACGAAACAAGCGCAGAACGAAATCCACGACAGGTGAAACGTTCGCATGTGAGGAGCTGCGACGGAGAATATATTGAATTTGGTGGATTTGTGTTCGGAGTCCACCGGAAGAGAGAACTTCCTGGGCTGAGCCGCCGGTGCTCCGCCTTGAACCGCCATATTCACGGCTGAATTTTGTTTAAAATTGGGAATTTGGGAAATTATTTAAAGGGAATTTAGGATGGCTCTTTGAGGGATCGAAAAGGGGAAGATTGGAAGCCGGAAAATATGGTGGAATAGGCCAAATCTCAGCCTTATACCGACATAGTTATCGACGCAAATTGGTTTTACTCCAAACAAAAACAACGACTTAGAGACATGAAGAAGACGATTGTATAC

mRNA sequence

ATGCCCTCCCCGAAGTTCCCGTCCGGCGTGTCCTCGCCGAGCATCAGAACCGCAAAGGCCGAAAGCGTTTGGAAAATCGCTGGGATGAAGAAAGCGATTCTCCACGCAGTGAATTTCGTTGCGCCGATGTGCTCGATGATGGCGAACACGTACGGCATAATCAGCTGTGTTGCGCCGCCGCCTAAGTTCCCCCAACCGCCGGCTACGCCATTGGCGGTGCCGACGACGGTGGAGGAGAACATTGAGCTCATCCAGAATTGGGTCGAGACGAATGTGGCGAGAGAGAATCCAGTGAAGAATCGAACGAGAAAAAACGAAGCAGGGGATGAGGCTATGGAGGTTAAATAAACAGCCGGCGAGGTTATGAGGATGAGTGAGGCAGAGGCGAGACGTGGTCCGACTAAATCACAGGCGGAACCCATCATGATACGGGCAAAGACAGCGCCGGAGACGGAGGCAATTCCGGCGTTCCCAATGTCAGTGTCGGTTAAATTAAGATTGTCGCGGATCACCGGAAGCAGAGGAGCTGCCGCAAAACTTGAAACGAAACAAGCGCAGAACGAAATCCACGACAGGTGAAACGTTCGCATGTGAGGAGCTGCGACGGAGAATATATTGAATTTGGTGGATTTGTGTTCGGAGTCCACCGGAAGAGAGAACTTCCTGGGCTGAGCCGCCGGTGCTCCGCCTTGAACCGCCATATTCACGGCTGAATTTTGTTTAAAATTGGGAATTTGGGAAATTATTTAAAGGGAATTTAGGATGGCTCTTTGAGGGATCGAAAAGGGGAAGATTGGAAGCCGGAAAATATGGTGGAATAGGCCAAATCTCAGCCTTATACCGACATAGTTATCGACGCAAATTGGTTTTACTCCAAACAAAAACAACGACTTAGAGACATGAAGAAGACGATTGTATAC

Coding sequence (CDS)

ATGCCCTCCCCGAAGTTCCCGTCCGGCGTGTCCTCGCCGAGCATCAGAACCGCAAAGGCCGAAAGCGTTTGGAAAATCGCTGGGATGAAGAAAGCGATTCTCCACGCAGTGAATTTCGTTGCGCCGATGTGCTCGATGATGGCGAACACGTACGGCATAATCAGCTGTGTTGCGCCGCCGCCTAAGTTCCCCCAACCGCCGGCTACGCCATTGGCGGTGCCGACGACGGTGGAGGAGAACATTGAGCTCATCCAGAATTGGGTCGAGACGAATGTGGCGAGAGAGAATCCAGTGAAGAATCGAACGAGAAAAAACGAAGCAGGGGATGAGGCTATGGAGGTTAAATAA

Protein sequence

MPSPKFPSGVSSPSIRTAKAESVWKIAGMKKAILHAVNFVAPMCSMMANTYGIISCVAPPPKFPQPPATPLAVPTTVEENIELIQNWVETNVARENPVKNRTRKNEAGDEAMEVK
Homology
[Close]
BLAST of Cp4.1LG01g15470 vs. NCBI nr
Match: KAE8663856.1 (hypothetical protein F3Y22_tig00112864pilonHSYRG00034 [Hibiscus syriacus])

HSP 1 Score: 115 bits (289), Expect = 8.31e-30
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 18  AKAESVWKI-AGMKKAILHAVNFVAPMCSMMANTYGIISCVAPPPKFPQPPATPLAVPTT 77
           A   +VW   AGMK AI  AVN  APM  M   T G+ISCVAPPP+FP PPATPLAVPTT
Sbjct: 17  AMIPAVWSFRAGMKNAIRQAVNLTAPMSRMRPKTTGMISCVAPPPRFPHPPATPLAVPTT 76

Query: 78  VEENIELIQNWVETNVARENPVKNRTRKNEAGDEAME 113
             EN+ELIQNWV+T VARE PVK RTR+ + G  AME
Sbjct: 77  GAENMELIQNWVDTKVAREKPVKKRTRRKD-GRRAME 112

[Close]
BLAST of Cp4.1LG01g15470 vs. NCBI nr
Match: KAF7809323.1 (polygalacturonase [Senna tora])

HSP 1 Score: 86.3 bits (212), Expect = 5.65e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 27  AGMKKAILHAVNFVAPMCSMMANTYGIISCVAPPPKFPQPPATPLAVPTTVEENIELIQN 86
           AG+KKAIL AVN  AP+  +  NT GI+SCVAPPP+FP P ATPLA PTT EENIELIQN
Sbjct: 368 AGIKKAILQAVNLTAPISRIRPNTIGIMSCVAPPPRFPHPAATPLAEPTTGEENIELIQN 427

[Close]
BLAST of Cp4.1LG01g15470 vs. NCBI nr
Match: PON41598.1 (hypothetical protein PanWU01x14_288700, partial [Parasponia andersonii])

HSP 1 Score: 65.5 bits (158), Expect = 2.29e-10
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 52  GIISCVAPPPKFPQPPATPLAVPTTVEENIELIQNWVETNVARENPVKNRTRKNEAGDE 110
           G+ S V P P   QP ATPLA PTT  EN+ELIQNW+ T  ARENP + RT  N  G+E
Sbjct: 3   GMTSWVTPEPTLAQPAATPLASPTTGPENMELIQNWLATKFARENPTRKRTAMNALGEE 61

[Close]
BLAST of Cp4.1LG01g15470 vs. NCBI nr
Match: PON84236.1 (hypothetical protein TorRG33x02_199900 [Trema orientale])

HSP 1 Score: 65.5 bits (158), Expect = 3.31e-10
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 52  GIISCVAPPPKFPQPPATPLAVPTTVEENIELIQNWVETNVARENPVKNRTRKNEAGDE 110
           G+ S V P P   QP ATPLA PTT  EN+ELIQNW+ T  ARENP + RT  N  G+E
Sbjct: 3   GMTSWVTPEPTLAQPAATPLASPTTGPENMELIQNWLATKFARENPTRKRTAMNALGEE 61

[Close]
BLAST of Cp4.1LG01g15470 vs. ExPASy TrEMBL
Match: A0A6A2XPB1 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112864pilonHSYRG00034 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 4.02e-30
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 0 

Query: 18  AKAESVWKI-AGMKKAILHAVNFVAPMCSMMANTYGIISCVAPPPKFPQPPATPLAVPTT 77
           A   +VW   AGMK AI  AVN  APM  M   T G+ISCVAPPP+FP PPATPLAVPTT
Sbjct: 17  AMIPAVWSFRAGMKNAIRQAVNLTAPMSRMRPKTTGMISCVAPPPRFPHPPATPLAVPTT 76

Query: 78  VEENIELIQNWVETNVARENPVKNRTRKNEAGDEAME 113
             EN+ELIQNWV+T VARE PVK RTR+ + G  AME
Sbjct: 77  GAENMELIQNWVDTKVAREKPVKKRTRRKD-GRRAME 112

[Close]
BLAST of Cp4.1LG01g15470 vs. ExPASy TrEMBL
Match: A0A2P5AYL6 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_288700 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.11e-10
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 52  GIISCVAPPPKFPQPPATPLAVPTTVEENIELIQNWVETNVARENPVKNRTRKNEAGDE 110
           G+ S V P P   QP ATPLA PTT  EN+ELIQNW+ T  ARENP + RT  N  G+E
Sbjct: 3   GMTSWVTPEPTLAQPAATPLASPTTGPENMELIQNWLATKFARENPTRKRTAMNALGEE 61

[Close]
BLAST of Cp4.1LG01g15470 vs. ExPASy TrEMBL
Match: A0A2P5EFE4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_199900 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.60e-10
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 52  GIISCVAPPPKFPQPPATPLAVPTTVEENIELIQNWVETNVARENPVKNRTRKNEAGDE 110
           G+ S V P P   QP ATPLA PTT  EN+ELIQNW+ T  ARENP + RT  N  G+E
Sbjct: 3   GMTSWVTPEPTLAQPAATPLASPTTGPENMELIQNWLATKFARENPTRKRTAMNALGEE 61

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15470 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8663856.18.31e-3064.95hypothetical protein F3Y22_tig00112864pilonHSYRG00034 [Hibiscus syriacus][more]
KAF7809323.15.65e-1771.67polygalacturonase [Senna tora][more]
PON41598.12.29e-1057.63hypothetical protein PanWU01x14_288700, partial [Parasponia andersonii][more]
PON84236.13.31e-1057.63hypothetical protein TorRG33x02_199900 [Trema orientale][more]
BLAST of Cp4.1LG01g15470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A2XPB14.02e-3064.95Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112864pilon... [more]
A0A2P5AYL61.11e-1057.63Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5EFE41.60e-1057.63Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_199900 PE=4 SV... [more]
BLAST of Cp4.1LG01g15470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15470.1Cp4.1LG01g15470.1mRNA