Cp4.1LG01g12450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g12450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Expansin
Location	Cp4.1LG01: 8805796 .. 8809591 (-)
RNA-Seq Expression	Cp4.1LG01g12450
Synteny	Cp4.1LG01g12450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAAGCAGACAATTTGAAGAAAGAAAACAAGAAAAAAAGAAAAAGAGATAGGGGCAAAGGCCAAAGAGAAGGGGATGCTGCTTGGTTGCACATGGCTATGGAAATTCATTAGCCAATAGGGCACAAACCGGCTTACCCCACTTGGATATCTCAGTAGCAAAGCTCGAAAACCACAGGTTTTGGCCCCCCTCATACCACCTTACACAACCAAAGTTACCATGATAATTGAATTTTTAGGTGTCAGTACCTTCAAAAAGTGTTGGTCTGTAGCGACGGTGGTTAATTAGTCTTAGCCACCCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCCCCCTCTCTCAGGATTTCTATATATTCTCCCCTAAACTCTCCTAATCTCTCACTCCTATCCTCCTTTCTGTTCCTTCATTTCCTTACATCTTTCCTTCTGGTAATCATCTTCTCCTCTCTCTTTCTCTCTCTCTCACACGCACACATTTGCTTCTGCAATCATGTTAGAAGATTTGCTGAAAGTTGAACTCTCTCTCTCTCTCTCTCTCTCTTTGTTGCAGGAATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCATAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTATGCACCAAAACAACCCCCATTTTATCCATGCCATTGGCAGACAATGTGAAATATGGCTGAACTTTTTTTTTGTTGGATGAATTTGTGCAGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCTAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGTAAGCAAGGCATTTGAACAGAGTTTTAAAATGCAGGGGATGTATTACAGAGGCGTTTAATTTAATAACTTTTGGTGGGGTTTTCTTTTTGTAGGGTACCCTGCAGGAGAAGGGGAGGTATAAGATTCACCATCAATGGGCACTCCTACTTCAACCTGGTTCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCTAGGAACTGGGGACAGAACTGGCAGAGCAACAGTTACCTCAATGGCCAAAGCCTGTCGTTCAAGGTCACCACCAGCGACGGCCGCACAGTCATCGCTAACAACGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACATACAGTGGTGCCCAATTCTAATTTATTACCTCCTCTAGCTAAAATAAGCTTCTATGTTTATGCAGAATTTAGTGTGATTTTTTTCTTTTTGTTTACTTAAAGTATACTAGAGTATTAGATAATAGTATACTCTATGTGAGCGTTTGGGTCAAAAAATGAGGAAAGGGCTTGTTTTGGGAAGCTCTTTCTTATCATTTTGATTCAAATTGCAACATTGAATGAGTGGCTTAATGGCTACTTATTGTGATTTTTTACCCTAACTTTTGCTATAAAGCAAGAGTTGGCAGAGGTGGGCTCTAACCACCCGCCTGCATTTTAGTTACTATTGTGAGTTCATCATGGTTGTATTTGATGTATTATTGGTTGCTGAAAGTGTAAATTTTCAGTTTCCTCAAGCAATGAAAAACCCAGACTTTTATTTATTTGTGTTCTGTTACTCTGTTTTCTTATTAATTGCTACCTCTCTGTTATTCGTTCCCTCGTCTGCCCCAAACTTAAAGGTCCTCTTTCCTCCTCCCTTTTCGCTAAATTCTTGTTCATCACCGATGATTGTGTTGGATGAATTGTGACTTCGTATGATCGTGTCGGGTGAGCAAGAGCCGCTTCGTCATACTCCCCCAAGTAATCGAGGTACTTGGAACCTACCCTTTACTATGTAATTGGAACCCACCCTGTTACCAATAACCAAGTAGAACAACAAACTTCCTAACGAATTACTACTAGTATACTCTTAATACACTTACTACATCCCTAATGGTATTCCTATCGCCTTGATGTTTGATATGAACAAATTTCGATGCATAAAGAGTTCGAATGAACAACAAAATCATTCAAAGATAATTAGTAATAGTCCAAACCTACCATTCATTGCTAGCAAATGGTTTTAGAACGCGTTTATTAAGCACAGGTTTGCACATCCTCACAAAAAATGTTTCTGTTCCTCCTCCAACCAACGTGGAATCTCGCTCGTTAACCTACTAAATAATAAGCGAGGGTCTAACAATGAAACAGCACAAGGGCCCGAAGAAGAAGCCCAAATGTGCTGGGCCTTAGACCTTCTGTTCTGCACAGCCATTTTCTTGTCCAGAATTTGAAATCCGTGGACATCGACCGGTGCCGAAATAAGCAAGGAAGAACTTGAAGAGCACTCATATTGATATGCTTAATGCTCGTTTTCTGTAAAATTATCACCTTCCAACCCTCATTCATACAATACCACCAATAAGCCATTGTCTAGAATCACTTCCTAAGTGCATAAAAATGTATACCTATGGGGAACAAAGTTTGGATCAATAAGACTTGTCTGGAATCACTCCACCGCTCTCTTCGCCCTCAAATCTGTCGAGCTCTCTGCAGTCGGCCGCGTTCTCCACATGTAAAACCCCAAACTCCTCACCTCCGATCCGGATTATGATCTTTACCCCATCTTTGATTTCCTTCTTAATGAGGTTCAATGCCCTAGAATTCTCGTCTCCGACTTGGACCTTCAATCTCCTCCATTTTCACCGTGCATGGATTGTCGTCGAAAATGCTGAAAGTTAGTGACGGGGAGCTCACTGCAAGGTTCATAGAAATGAAATTGCAGTCGTTGACGGCTGATCGTCGAAGTGAGTTGCTTTGCTTCTTGTAAATTTGTAGTTTCTTCGGATGTGATTATTTGTGGTTTAGGGCTCTTTAGAGTCTTCAATCTGCGTTAAAACTCAATTGATTAGGTTGTTTATGGATGAGTAGTAATATGAACCAGGGCCTTATTGCAATCGAAAGCTAAGAAAAATTATGAACACCAGCGATTCCCACAACTGATGCTGTGTTTCAGTGATACCAACCCATTGTGTTTAACAACACTTTGGACATCTTTTTAATCTTGGGATTGACTTTGTATGCAGTATTGAGATCAGATTCTACATAGCTGCAAGGACCTGTGGTTCTTAATATTATGCTAAAAATTGGAATCCTGGCAGCTTGGTACTGAGATAAAAATGATATTGGTATACACAAATTGACACAGTGGCTGGAGCTAAACAAGTGGCACGGATGGTTGTATGTAATTAACACATGAACTGCTGATGATTTGATGCTTCTTATAGTCTGTCTGCCACAAACACACGTGCTGCTATGTGGAAATCCTGGATGAGCATTGCTGATGTTAGGTTAAGTTAACTTTGTCCTTCCTTTGTGCAGGAACTGTTATGGAAATGATCCTACAGCTCGATTGATAAGACCAGGCCTTCCACACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCACCGGTCAGAACTACAGCTCGATTGA

mRNA sequence

ATGAGTGAAGCAGACAATTTGAAGAAAGAAAACAAGAAAAAAAGAAAAAGAGATAGGGGCAAAGGCCAAAGAGAAGGGGATGCTGCTTGGTTGCACATGGCTATGGAAATTCATTAGCCAATAGGGCACAAACCGGCTTACCCCACTTGGATATCTCAGTAGCAAAGCTCGAAAACCACAGGTTTTGGCCCCCCTCATACCACCTTACACAACCAAAGTTACCATGATAATTGAATTTTTAGGTGTCAGTACCTTCAAAAAGTGTTGGTCTGTAGCGACGGTGGTTAATTAGTCTTAGCCACCCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCCCCCTCTCTCAGGATTTCTATATATTCTCCCCTAAACTCTCCTAATCTCTCACTCCTATCCTCCTTTCTGTTCCTTCATTTCCTTACATCTTTCCTTCTGGAATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCATAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCTAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGAACTGTTATGGAAATGATCCTACAGCTCGATTGATAAGACCAGGCCTTCCACACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCACCGGTCAGAACTACAGCTCGATTGA

Coding sequence (CDS)

ATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCATAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCTAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGAACTGTTATGGAAATGATCCTACAGCTCGATTGATAAGACCAGGCCTTCCACACATAATGCAGCCCTTGACTATCTATATTGGTTGGAGGGATTCACAAGATTGTTTCCATCACCGGTCAGAACTACAGCTCGATTGA

Protein sequence

MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVAYRRNCYGNDPTARLIRPGLPHIMQPLTIYIGWRDSQDCFHHRSELQLD

Homology

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy Swiss-Prot
Match: Q9C554 (Expansin-A1 OS=Arabidopsis thaliana OX=3702 GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.3e-69
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           +F+A   A+ S V+ YAGGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 7   LFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALS 66

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EIRC +D KWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP QHFD
Sbjct: 67  TALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFD 126

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQY+AGIVPVAYRR
Sbjct: 127 LSQPVFQRIAQYRAGIVPVAYRR 149

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy Swiss-Prot
Match: O80622 (Expansin-A15 OS=Arabidopsis thaliana OX=3702 GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 249.2 bits (635), Expect = 3.8e-65
Identity = 117/143 (81.82%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           + L  F A+V SV  Y   GW +AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 11  IALFCFAAMVCSVHGY-DAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 70

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EI+C SD  WCLPG+I+VTATNFCPPNNALPNNAGGWCNPPL HFD
Sbjct: 71  TALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFD 130

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQYKAG+VPV+YRR
Sbjct: 131 LSQPVFQRIAQYKAGVVPVSYRR 152

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy Swiss-Prot
Match: Q9LDR9 (Expansin-A10 OS=Arabidopsis thaliana OX=3702 GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-64
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 14  IVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGL 73
           + SSV  Y GGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGT+TAALSTALFNNGL
Sbjct: 15  MASSVSGY-GGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGL 74

Query: 74  SCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQH 133
           SCGSC+EIRC +D KWCLPGSIVVTATNFCPPNNAL NN GGWCNPPL+HFDL+QPVFQ 
Sbjct: 75  SCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQR 134

Query: 134 IAQYKAGIVPVAYRR 149
           IAQY+AGIVPV+YRR
Sbjct: 135 IAQYRAGIVPVSYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy Swiss-Prot
Match: Q6ZGU9 (Expansin-A5 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 104/129 (80.62%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 23  GGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIR 82
           GGGW+SAHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCG+C+E+R
Sbjct: 61  GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVR 120

Query: 83  C---ASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYKA 142
           C         CLPGS+VVTATNFCPPNNALP++ GGWCNPP  HFD+SQPVFQ IA +KA
Sbjct: 121 CDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKA 180

Query: 143 GIVPVAYRR 149
           GIVPV+YRR
Sbjct: 181 GIVPVSYRR 189

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.8e-57
Identity = 107/155 (69.03%), Postives = 126/155 (81.29%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDA-----YAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQ 60
           MA  L  L   + + S  DA     Y+GG W +AHATFYGGSDASGTMGGACGYGNLYSQ
Sbjct: 1   MAIKLAILFTTFVLFSLADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQ 60

Query: 61  GYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPG--SIVVTATNFCPPNNALPNNA 120
           GYGTNTAALSTALFNNG+SCG+C+E++CA+DP+WC  G  SI++TATNFCPPN A P++ 
Sbjct: 61  GYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDN 120

Query: 121 GGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVAYRR 149
           GGWCNPP +HFDL+ PVF  IAQY+AGIVPV+YRR
Sbjct: 121 GGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of Cp4.1LG01g12450 vs. NCBI nr
Match: XP_022985080.1 (expansin-A1 [Cucurbita maxima] >XP_023517096.1 expansin-A1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306 bits (783), Expect = 1.12e-102
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQYKAGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. NCBI nr
Match: XP_022957543.1 (expansin-A1 [Cucurbita moschata] >KAG6601443.1 Expansin-A1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032225.1 Expansin-A1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305 bits (782), Expect = 1.59e-102
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVLVFLAAFYA+VSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLVFLAAFYAVVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQYKAGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. NCBI nr
Match: XP_008446373.1 (PREDICTED: expansin-A1 [Cucumis melo] >KAA0034431.1 expansin-A1 [Cucumis melo var. makuwa] >TYK17703.1 expansin-A1 [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (768), Expect = 2.14e-100
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVL+FLA FYAIVSSVDAYAGGGWT AHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDP+WCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQY+AGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYRAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. NCBI nr
Match: XP_038891324.1 (expansin-A1 [Benincasa hispida])

HSP 1 Score: 299 bits (766), Expect = 4.32e-100
Identity = 142/148 (95.95%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MAS+L+FLA F+AIVSSVDAYAGGGWT AHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASILIFLAGFFAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQY+AGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYRAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. NCBI nr
Match: XP_004135171.1 (expansin-A1 [Cucumis sativus] >KGN51933.1 hypothetical protein Csa_007784 [Cucumis sativus])

HSP 1 Score: 297 bits (761), Expect = 2.49e-99
Identity = 141/148 (95.27%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVL+FLA FYAIVSSVDAY GGGWT AHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLIFLAGFYAIVSSVDAYGGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEI+CASDP+WCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIKCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQY+AGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYRAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy TrEMBL
Match: A0A6J1JAD1 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111483155 PE=3 SV=1)

HSP 1 Score: 306 bits (783), Expect = 5.42e-103
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQYKAGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy TrEMBL
Match: A0A6J1H0I7 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111458913 PE=3 SV=1)

HSP 1 Score: 305 bits (782), Expect = 7.69e-103
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVLVFLAAFYA+VSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLVFLAAFYAVVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQYKAGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy TrEMBL
Match: A0A5D3D0I6 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00310 PE=3 SV=1)

HSP 1 Score: 300 bits (768), Expect = 1.04e-100
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVL+FLA FYAIVSSVDAYAGGGWT AHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDP+WCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQY+AGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYRAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy TrEMBL
Match: A0A1S3BEF0 (Expansin OS=Cucumis melo OX=3656 GN=LOC103489135 PE=3 SV=1)

HSP 1 Score: 300 bits (768), Expect = 1.04e-100
Identity = 143/148 (96.62%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVL+FLA FYAIVSSVDAYAGGGWT AHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEIRCASDP+WCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIRCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQY+AGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYRAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. ExPASy TrEMBL
Match: A0A0A0KQP2 (Expansin OS=Cucumis sativus OX=3659 GN=Csa_5G605760 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 1.21e-99
Identity = 141/148 (95.27%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60
           MASVL+FLA FYAIVSSVDAY GGGWT AHATFYGGSDASGTMGGACGYGNLYSQGYGTN
Sbjct: 1   MASVLIFLAGFYAIVSSVDAYGGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTN 60

Query: 61  TAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120
           TAALSTALFNNGLSCGSCYEI+CASDP+WCLPGSIVVTATNFCPPNNALPNNAGGWCNPP
Sbjct: 61  TAALSTALFNNGLSCGSCYEIKCASDPRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP 120

Query: 121 LQHFDLSQPVFQHIAQYKAGIVPVAYRR 148
           LQHFDLSQPVFQHIAQY+AGIVPVAYRR
Sbjct: 121 LQHFDLSQPVFQHIAQYRAGIVPVAYRR 148

[Close]

BLAST of Cp4.1LG01g12450 vs. TAIR 10
Match: AT1G69530.1 (expansin A1 )

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-70
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           +F+A   A+ S V+ YAGGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 7   LFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALS 66

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EIRC +D KWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP QHFD
Sbjct: 67  TALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFD 126

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQY+AGIVPVAYRR
Sbjct: 127 LSQPVFQRIAQYRAGIVPVAYRR 149

[Close]

BLAST of Cp4.1LG01g12450 vs. TAIR 10
Match: AT1G69530.3 (expansin A1 )

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-70
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           +F+A   A+ S V+ YAGGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 7   LFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALS 66

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EIRC +D KWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP QHFD
Sbjct: 67  TALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFD 126

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQY+AGIVPVAYRR
Sbjct: 127 LSQPVFQRIAQYRAGIVPVAYRR 149

[Close]

BLAST of Cp4.1LG01g12450 vs. TAIR 10
Match: AT1G69530.2 (expansin A1 )

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-70
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           +F+A   A+ S V+ YAGGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 7   LFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALS 66

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EIRC +D KWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP QHFD
Sbjct: 67  TALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFD 126

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQY+AGIVPVAYRR
Sbjct: 127 LSQPVFQRIAQYRAGIVPVAYRR 149

[Close]

BLAST of Cp4.1LG01g12450 vs. TAIR 10
Match: AT1G69530.4 (expansin A1 )

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-70
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           +F+A   A+ S V+ YAGGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 7   LFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALS 66

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EIRC +D KWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP QHFD
Sbjct: 67  TALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFD 126

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQY+AGIVPVAYRR
Sbjct: 127 LSQPVFQRIAQYRAGIVPVAYRR 149

[Close]

BLAST of Cp4.1LG01g12450 vs. TAIR 10
Match: AT1G69530.5 (expansin A1 )

HSP 1 Score: 262.7 bits (670), Expect = 2.3e-70
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 6   VFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALS 65
           +F+A   A+ S V+ YAGGGW +AHATFYGG DASGTMGGACGYGNLYSQGYGTNTAALS
Sbjct: 7   LFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALS 66

Query: 66  TALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFD 125
           TALFNNGLSCG+C+EIRC +D KWCLPGSIVVTATNFCPPNNALPNNAGGWCNPP QHFD
Sbjct: 67  TALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFD 126

Query: 126 LSQPVFQHIAQYKAGIVPVAYRR 149
           LSQPVFQ IAQY+AGIVPVAYRR
Sbjct: 127 LSQPVFQRIAQYRAGIVPVAYRR 149

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C554	3.3e-69	85.31	Expansin-A1 OS=Arabidopsis thaliana OX=3702 GN=EXPA1 PE=2 SV=1	[more]
O80622	3.8e-65	81.82	Expansin-A15 OS=Arabidopsis thaliana OX=3702 GN=EXPA15 PE=2 SV=2	[more]
Q9LDR9	1.9e-64	85.19	Expansin-A10 OS=Arabidopsis thaliana OX=3702 GN=EXPA10 PE=2 SV=1	[more]
Q6ZGU9	1.3e-57	80.62	Expansin-A5 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA5 PE=2 SV=1	[more]
O48818	3.8e-57	69.03	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g12450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985080.1	1.12e-102	100.00	expansin-A1 [Cucurbita maxima] >XP_023517096.1 expansin-A1 [Cucurbita pepo subsp...	[more]
XP_022957543.1	1.59e-102	99.32	expansin-A1 [Cucurbita moschata] >KAG6601443.1 Expansin-A1, partial [Cucurbita a...	[more]
XP_008446373.1	2.14e-100	96.62	PREDICTED: expansin-A1 [Cucumis melo] >KAA0034431.1 expansin-A1 [Cucumis melo va...	[more]
XP_038891324.1	4.32e-100	95.95	expansin-A1 [Benincasa hispida]	[more]
XP_004135171.1	2.49e-99	95.27	expansin-A1 [Cucumis sativus] >KGN51933.1 hypothetical protein Csa_007784 [Cucum...	[more]

BLAST of Cp4.1LG01g12450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAD1	5.42e-103	100.00	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111483155 PE=3 SV=1	[more]
A0A6J1H0I7	7.69e-103	99.32	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111458913 PE=3 SV=1	[more]
A0A5D3D0I6	1.04e-100	96.62	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00310 PE=3...	[more]
A0A1S3BEF0	1.04e-100	96.62	Expansin OS=Cucumis melo OX=3656 GN=LOC103489135 PE=3 SV=1	[more]
A0A0A0KQP2	1.21e-99	95.27	Expansin OS=Cucumis sativus OX=3659 GN=Csa_5G605760 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g12450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69530.1	2.3e-70	85.31	expansin A1	[more]
AT1G69530.3	2.3e-70	85.31	expansin A1	[more]
AT1G69530.2	2.3e-70	85.31	expansin A1	[more]
AT1G69530.4	2.3e-70	85.31	expansin A1	[more]
AT1G69530.5	2.3e-70	85.31	expansin A1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 65..83 score: 69.74 coord: 43..61 score: 78.29 coord: 139..155 score: 41.62 coord: 25..40 score: 68.91
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 56..70 score: 92.22 coord: 95..105 score: 84.24 coord: 114..131 score: 74.63 coord: 83..94 score: 57.22 coord: 131..144 score: 69.52
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 61..146 e-value: 4.0E-56 score: 202.4
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 44..148 score: 27.534563
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 12..150 e-value: 3.4E-44 score: 152.3
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 7..148
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 61..146 e-value: 6.1E-24 score: 84.1
None	No IPR available	PANTHER	PTHR31867:SF178	EXPANSIN	coord: 5..150
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 5..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g12450.1	Cp4.1LG01g12450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane