CmoCh20G003720 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G003720
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr20: 1826527 .. 1826880 (+)
RNA-Seq ExpressionCmoCh20G003720
SyntenyCmoCh20G003720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAACAGTCTTAAAAAGCCTAGGAAAAACAGAATAACTGAGAATCGCCTCCGCCTTCGTTTCGGTTCTGTCTGCGTTCTCAAAAAACCCTTTGTCAATTCCTCTAGCTCTGTCATCTTCTTTACAGAAGTAGATTTTCGTTCACCTGCTGGATTAACGAACTGGATGGAAGCTTTTGCTAAGAATATTCCAGACCTCCATATTGCTTTAATCGTCGCCAGTTGTCATCTTACCCCTTCCTCATCTGACTTTGGCCGTTTATTCTTCATTGAACCGAAGCTCCTCAAGATACTTCCGTTTCTGTCTACTGATTCATTCGTTCCTCTCCCAGAGTTTCAATGTCTTCCGTAG

mRNA sequence

ATGAGCAACAGTCTTAAAAAGCCTAGGAAAAACAGAATAACTGAGAATCGCCTCCGCCTTCGTTTCGGTTCTGTCTGCGTTCTCAAAAAACCCTTTGTCAATTCCTCTAGCTCTGTCATCTTCTTTACAGAAGTAGATTTTCGTTCACCTGCTGGATTAACGAACTGGATGGAAGCTTTTGCTAAGAATATTCCAGACCTCCATATTGCTTTAATCGTCGCCAGTTGTCATCTTACCCCTTCCTCATCTGACTTTGGCCGTTTATTCTTCATTGAACCGAAGCTCCTCAAGATACTTCCGTTTCTGTCTACTGATTCATTCGTTCCTCTCCCAGAGTTTCAATGTCTTCCGTAG

Coding sequence (CDS)

ATGAGCAACAGTCTTAAAAAGCCTAGGAAAAACAGAATAACTGAGAATCGCCTCCGCCTTCGTTTCGGTTCTGTCTGCGTTCTCAAAAAACCCTTTGTCAATTCCTCTAGCTCTGTCATCTTCTTTACAGAAGTAGATTTTCGTTCACCTGCTGGATTAACGAACTGGATGGAAGCTTTTGCTAAGAATATTCCAGACCTCCATATTGCTTTAATCGTCGCCAGTTGTCATCTTACCCCTTCCTCATCTGACTTTGGCCGTTTATTCTTCATTGAACCGAAGCTCCTCAAGATACTTCCGTTTCTGTCTACTGATTCATTCGTTCCTCTCCCAGAGTTTCAATGTCTTCCGTAG

Protein sequence

MSNSLKKPRKNRITENRLRLRFGSVCVLKKPFVNSSSSVIFFTEVDFRSPAGLTNWMEAFAKNIPDLHIALIVASCHLTPSSSDFGRLFFIEPKLLKILPFLSTDSFVPLPEFQCLP
Homology
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BLAST of CmoCh20G003720 vs. NCBI nr
Match: KAG6570654.1 (Peptidyl-prolyl cis-trans isomerase CYP19-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 44  EVDFRSPAGLTNWMEAFAKNIPDLHIALIVASCHLTPSSSDFGRLF---FIEPKLLKILP 103
           ++DF SPAGLTNWMEAFAKNIP+LHIALIVA CHL+  +    R F    +   LL++ P
Sbjct: 185 KLDFHSPAGLTNWMEAFAKNIPELHIALIVARCHLSSLNRSSSRCFCFCLLIHSLLQLAP 244

Query: 104 ----FLSTDSF 108
               F S+ SF
Sbjct: 245 PGLSFSSSQSF 255

The following BLAST results are available for this feature:
BLAST of CmoCh20G003720 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G003720 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh20G003720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570654.11.3e-0954.93Peptidyl-prolyl cis-trans isomerase CYP19-4, partial [Cucurbita argyrosperma sub... [more]
BLAST of CmoCh20G003720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G003720.1CmoCh20G003720.1mRNA