CmoCh15G005120 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G005120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	Cmo_Chr15: 2366965 .. 2367744 (-)
RNA-Seq Expression	CmoCh15G005120
Synteny	CmoCh15G005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCGCAAGGAGAAGAGAGCCAAAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTATCGATATCCCTCCGCCACCTCTTCTGCCCCACCGCCGCCGTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGAGGTTCTGGTGGTTTGGTTCCTTCGAAGTCTACTGTCTACGTTTCCAATTTCGACTATTCACTCACTAATTCGGATCTCCATACTCTCTTCTCCACTTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGCTGCGTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGACCGTGAAACAGATGCATGGGAAGATTTTGAATGGCCGTGCTCTGAAGGTTGCTATAGCGAATGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAAGACAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGACATTTGTCTTATGAGTGTCCTAAAAATCAATTGGGGCCAAGGGAGCGACCTGAACCGAAGCGGGTGAGAAAGGGTGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGATGGGGAAGGTTTTGAGGATGACAATTGGGCCTCAGTGGTGGACGGAGATGCAGACCAAAGACTGCTGACTAGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGGTGAAGATGAGTAA

mRNA sequence

ATGTCGCGCAAGGAGAAGAGAGCCAAAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTATCGATATCCCTCCGCCACCTCTTCTGCCCCACCGCCGCCGTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGAGGTTCTGGTGGTTTGGTTCCTTCGAAGTCTACTGTCTACGTTTCCAATTTCGACTATTCACTCACTAATTCGGATCTCCATACTCTCTTCTCCACTTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGCTGCGTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGACCGTGAAACAGATGCATGGGAAGATTTTGAATGGCCGTGCTCTGAAGGTTGCTATAGCGAATGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAAGACAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGACATTTGTCTTATGAGTGTCCTAAAAATCAATTGGGGCCAAGGGAGCGACCTGAACCGAAGCGGGTGAGAAAGGGTGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGATGGGGAAGGTTTTGAGGATGACAATTGGGCCTCAGTGGTGGACGGAGATGCAGACCAAAGACTGCTGACTAGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGGTGAAGATGAGTAA

Coding sequence (CDS)

ATGTCGCGCAAGGAGAAGAGAGCCAAAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTATCGATATCCCTCCGCCACCTCTTCTGCCCCACCGCCGCCGTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGAGGTTCTGGTGGTTTGGTTCCTTCGAAGTCTACTGTCTACGTTTCCAATTTCGACTATTCACTCACTAATTCGGATCTCCATACTCTCTTCTCCACTTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGCTGCGTTCGTCCAGTTTATTTCTCAGGACGACGCGGTCAAGACCGTGAAACAGATGCATGGGAAGATTTTGAATGGCCGTGCTCTGAAGGTTGCTATAGCGAATGATAATGGTCGCGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAAGACAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGACATTTGTCTTATGAGTGTCCTAAAAATCAATTGGGGCCAAGGGAGCGACCTGAACCGAAGCGGGTGAGAAAGGGTGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGATGGGGAAGGTTTTGAGGATGACAATTGGGCCTCAGTGGTGGACGGAGATGCAGACCAAAGACTGCTGACTAGCAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGGTGAAGATGAGTAA

Protein sequence

MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVVEKKKAKKASYFSDESGEDE

Homology

[Close]

BLAST of CmoCh15G005120 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.0e-70
Identity = 156/271 (57.56%), Postives = 192/271 (70.85%), Query Frame = 0


Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+ K  +SD ++D+TFYYRY   +S A PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRY---SSVAAPPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRG AFV ++S++DA K  
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L V+IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEPKRVRKGGVGARHEEDWGSDD-------------GEGFEDDNWASVVDGDADQRL 245
           RERP P + R    G R EE+  +++              E FE++NWASVVD +A +RL
Sbjct: 182 RERPPPPKKR----GRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERL 241

Query: 246 LTSSENVVE----KKKAKKASYFSDESGEDE 260
                   E    K+K KK SYFSDES +++
Sbjct: 242 RKREAEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of CmoCh15G005120 vs. ExPASy Swiss-Prot
Match: Q6DJI9 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis OX=8355 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.1e-41
Identity = 99/215 (46.05%), Postives = 132/215 (61.40%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DLH +FS +GK+ +VT+LKD+ +RKS+G +FV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDK 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A   V+ ++ K L GRA+K +IA DNGRA EFIR+R Y DKSRCYECG   GHLSY C
Sbjct: 62  ESAQNCVRGLNNKQLFGRAIKASIAKDNGRATEFIRRRNYTDKSRCYECGDT-GHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSEN 238
           PKN LG RE P+ K  +K       EE+   ++ E  ED+     +D    Q +      
Sbjct: 122 PKNMLGEREPPQKKEKKKRKRLVEEEEEEVVEEEES-EDEGEDPALD-SLSQAIAFQQAR 181

Query: 239 VVEKK-------------------KAKKASYFSDE 255
           + E+K                   + KK++YFSDE
Sbjct: 182 IDEEKNKYRHDPAEASTSEDSRRPRIKKSTYFSDE 213

[Close]

BLAST of CmoCh15G005120 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.3e-40
Identity = 101/213 (47.42%), Postives = 127/213 (59.62%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+G AFV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A    + ++ K L GR +K +IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSEN 238
           PKN LG RE P  K  +K     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 239 VVEKKKA-----------------KKASYFSDE 255
              K+ A                 KK++YFSDE
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDE 213

[Close]

BLAST of CmoCh15G005120 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 3.3e-40
Identity = 97/212 (45.75%), Postives = 132/212 (62.26%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+G AF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A    + ++ K L GR +K +IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEE-----DWGSDDGEGFEDDNWASVV-----DGDA 238
           PKN LG RE P+ K  +K       EE     +   D+GE    D+ +  +       + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 DQRLLTSSENV------VEKKKAKKASYFSDE 255
           +Q+    S  V        + + KK++YFSDE
Sbjct: 182 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDE 212

[Close]

BLAST of CmoCh15G005120 vs. ExPASy Swiss-Prot
Match: Q56JZ7 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus OX=9913 GN=ZCRB1 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-39
Identity = 96/214 (44.86%), Postives = 131/214 (61.21%), Query Frame = 0


Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TR+S+G AF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A    + ++ K L GR +K +IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSEN 238
           PKN LG RE P+ K  +K       EE+   ++ E  ED+     +D  +       ++ 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKIPEPEEE--IEEVEESEDEGEDPALDSLSQAIAFQQAKI 181

Query: 239 VVEKKK------------------AKKASYFSDE 255
             E+KK                   KK++YFSDE
Sbjct: 182 EEEQKKWKPSSGGPSTSDDSRRPRIKKSTYFSDE 212

[Close]

BLAST of CmoCh15G005120 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.2e-138
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of CmoCh15G005120 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 3.9e-137
Identity = 257/259 (99.23%), Postives = 257/259 (99.23%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MSRK KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDD WASVVDGDADQRLLTSSENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of CmoCh15G005120 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.1e-126
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK K+  NP SDSD+DETFYYRYPSA SSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLT  EN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of CmoCh15G005120 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.1e-126
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK K+  NP SDSD+DETFYYRYPSA SSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLT  EN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of CmoCh15G005120 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 7.7e-117
Identity = 225/259 (86.87%), Postives = 234/259 (90.35%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RK KR  NPNSDSDDDETFYYRYPSA SSAPPP SS     SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  K+M+GKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENV 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           E+KK KKASYFSDES EDE
Sbjct: 241 ERKKGKKASYFSDESDEDE 254

[Close]

BLAST of CmoCh15G005120 vs. NCBI nr
Match: KAG7016330.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 502.3 bits (1292), Expect = 2.5e-138
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of CmoCh15G005120 vs. NCBI nr
Match: XP_022939952.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_022939953.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata])

HSP 1 Score: 502.3 bits (1292), Expect = 2.5e-138
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of CmoCh15G005120 vs. NCBI nr
Match: XP_022993724.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_022993726.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima])

HSP 1 Score: 497.3 bits (1279), Expect = 8.1e-137
Identity = 257/259 (99.23%), Postives = 257/259 (99.23%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MSRK KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDD WASVVDGDADQRLLTSSENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGEDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of CmoCh15G005120 vs. NCBI nr
Match: XP_023549591.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.9 bits (1265), Expect = 3.4e-135
Identity = 257/260 (98.85%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPP-SSSQSHFSSQSHSHSSTKSGGGS 60
           MSRK KRAKNPNSDSDDDETFYYRYPSATSSAPPPP SSSQSHFSSQS SHSSTKSGGGS
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSSQSHFSSQSQSHSSTKSGGGS 60

Query: 61  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQD 120
           GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQD
Sbjct: 61  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQD 120

Query: 121 DAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP 180
           DAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP
Sbjct: 121 DAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP 180

Query: 181 KNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENV 240
           KNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENV
Sbjct: 181 KNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENV 240

Query: 241 VEKKKAKKASYFSDESGEDE 260
           VEKKKAKKASYFSDESGEDE
Sbjct: 241 VEKKKAKKASYFSDESGEDE 260

[Close]

BLAST of CmoCh15G005120 vs. NCBI nr
Match: KAG6578804.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461.1 bits (1185), Expect = 6.4e-126
Identity = 235/236 (99.58%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSS 237
           NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTS+
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTST 236

[Close]

BLAST of CmoCh15G005120 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-71
Identity = 156/271 (57.56%), Postives = 192/271 (70.85%), Query Frame = 0


Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+ K  +SD ++D+TFYYRY   +S A PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRY---SSVAAPPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRG AFV ++S++DA K  
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L V+IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEPKRVRKGGVGARHEEDWGSDD-------------GEGFEDDNWASVVDGDADQRL 245
           RERP P + R    G R EE+  +++              E FE++NWASVVD +A +RL
Sbjct: 182 RERPPPPKKR----GRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERL 241

Query: 246 LTSSENVVE----KKKAKKASYFSDESGEDE 260
                   E    K+K KK SYFSDES +++
Sbjct: 242 RKREAEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of CmoCh15G005120 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-11
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKTVKQMHGKILNGRALKVAIANDNGRA 150
            A   +K+M GK LNGR ++V +A +   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of CmoCh15G005120 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-11
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKTVKQMHGKILNGRALKVAIANDNGRA 150
            A   +K+M GK LNGR ++V +A +   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of CmoCh15G005120 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 64  PSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVK 123
           P  S + V N  +S +   L   FS FG+IA V ++KD   ++S+G AF+QF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 124 TVKQMHGKILNGRALKVAIANDNGR 149
            ++ M  ++ NGR + + IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]

BLAST of CmoCh15G005120 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-09
Identity = 50/192 (26.04%), Postives = 87/192 (45.31%), Query Frame = 0


Query: 68  TVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQ 127
           ++ V N  +  T  DL+ LF+ +GK+  V + +DR+T  SRG AFV++  +D+A K V++
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 128 MHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRE 187
           + G++++GR + V  A     A +  + RV +   +     +     S   P+    P  
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRS-RSPRRSRSPPR 136

Query: 188 RPEPKRVRKGGVGARHEEDWGSDD----GEGFEDDNWASVVDGDADQRLLTSSENVVEKK 247
           R  P+R R      R  +D+   D          D      + D D R  T S +    +
Sbjct: 137 RRSPRRSR--SPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDE 196

Query: 248 KAKKASYFSDES 256
           K +    + +ES
Sbjct: 197 KRRVRGRYDNES 205

The following BLAST results are available for this feature:

BLAST of CmoCh15G005120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	4.0e-70	57.56	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q6DJI9	5.1e-41	46.05	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laev...	[more]
Q5SP50	3.3e-40	47.42	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]
Q8TBF4	3.3e-40	45.75	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens...	[more]
Q56JZ7	1.6e-39	44.86	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus O...	[more]

BLAST of CmoCh15G005120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIA0	1.2e-138	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]
A0A6J1JX53	3.9e-137	99.23	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A5A7SYZ1	9.1e-126	91.12	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	9.1e-126	91.12	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1BY38	7.7e-117	86.87	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]

BLAST of CmoCh15G005120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016330.1	2.5e-138	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr...	[more]
XP_022939952.1	2.5e-138	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_...	[more]
XP_022993724.1	8.1e-137	99.23	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_02...	[more]
XP_023549591.1	3.4e-135	98.85	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita pepo subsp. pe...	[more]
KAG6578804.1	6.4e-126	99.58	U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr...	[more]

BLAST of CmoCh15G005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	2.8e-71	57.56	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	3.3e-11	36.67	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	3.3e-11	36.67	glycine-rich RNA-binding protein 4	[more]
AT4G20030.1	2.1e-10	38.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	4.0e-09	26.04	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 68..141 e-value: 3.1E-24 score: 96.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 69..139 e-value: 5.9E-20 score: 70.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 67..145 score: 19.36544
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 68..141 e-value: 6.0E-4 score: 29.1
None	No IPR available	GENE3D	4.10.60.10		coord: 154..192 e-value: 4.4E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 12..258
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..142 e-value: 1.3E-27 score: 98.5
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 12..258
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 66..143 e-value: 4.69062E-39 score: 128.972
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G005120.1	CmoCh15G005120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding