CmaCh05G001060 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G001060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF1639)
LocationCma_Chr05: 456538 .. 459640 (+)
RNA-Seq ExpressionCmaCh05G001060
SyntenyCmaCh05G001060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGATCATCTCAGAATCAATAGCCATGGCAGTTTCGTTAGTAATAATCTCAATGGTAGGGATAGAACGGCCGTGGATAGTTCGCTGTTGTTGCGAGCGAGATCTGAGGCCGCTGCCGCCGCCGTTGCGACCAGGCCACAACCCACACCATCAGAGTTCGTCTTACAATGGGGAAACGGGAAGCGTCTCCGGTGTATGAAAGTCCAGGTCAAGGCCAGGGACGTTTCCGCCGCCGCCGCACCGGTTCACAAAACCACTGTCCGAGTCGATCGGCGGGTCGTTAGAGCCGATAGAGACTCGATTATAAGACAGAACCACCAGCCGAGTCCCATTCATAACTCTAACCACAGTAATGGGCACTTGAATCTTCGTCAACGGCCGATTTCTCCTCAACCGCCAACTCTACCGCCGCCGCCGCCTGCTCCTTCTCAGCGTATTCTTAGGTACCGCTCGTTAATTCTTCCTCGTCTCTCTCTCTCTTCTTCAATACCAGTCCTGTTTCTTCTTTTTTTTCTTTTTTTCTTTTATTTTGATCTGATTGATCGCTTAGATCTCAGCCGATCTTCCCGGCCATGGGATTCAAAATCCCATGTAATTTTAACGTTGGGCCTTTGATTTGGGCTTTTATATTACATGGCTTTCTACCCACTGAGTTTCTGCTCTTTTTTTTTTTTTTTTTTGTTCTTAAATAAAAAAGAAGTTAAATTTTTTTTCAAAATATGGTTCAACTTAGAATTGGATCGATAAAATTGAAGAAATTTAAAATTTGATATCTAAATTTATAATTTTAATAATTACTAGACGAGACTAAGTAAAAATTATTGAGAGAAGATATTTTATTTTATTATTATTATCTTTTTTTGGGTATAATTGCAACTTGGGTTTGGGGTTTGATGATGATCTTTAACTTCATGGAACGCAATTTGCCCCCGTTGATTAGGACACGTCCGCAGTTTCTTTCTCCTGTCGTTTTAGCTTGTGGAATAATAGCCGTCGGATTATAGATCGGAGTGTCCCTCATCGGCTGTCGTTGAGTGGACGCGTATTCTCGGAAATTGTAGATCCAACGGCTGAGGGGGGTGGGGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGAGGGGGGCAGGGGAGTCACGATTTGAAAAGACAGTTTTGTCCTTAAAAAATAGGCCATTGAAGAAGAGAGACGAGGTCTCCGACTCTCCCATTTTGTACGCTAATGCTAGGCCGAGGACATTCCCGTAATTTCAGCCTAAAAACGTAAATAATCAATTGCTATTTTTTTCTAATGTGTTATCCCTTCAATCTTTATGAGATTTGTTTTTGGGCTTTTGTGTTGTAATCTGAGTGTATGTGGGGTTGGACTCTTTTATTAATTTTTTTATTATTAGATTTTTTTTTTTTACTTACTTTTTGGGGATACCAAGTAGTTAGGAGACTGAGTATTTTCTTTCCTTTTTTTCCGGTGGATTTGAATTTGATTAGGAACTCTGAGATTTCCGGTGTGATGAAAGGGCAATCCAACGGCGGTGTCAGAGCAATCACTTCACCGGACAGGGTGGCGCCGGAAAAGAGACCGCCGTCTAATCACGACAACCACCACCCCCACCATAAATCCGCCGCTACATCAGACACCAAAAAGGGTGGGTCGTCTTCCGGCAGCGGAGAAGCCCTAGCGCCACCGTCGCAAGGGCAGCCGGCGTGGCCGCCGAAGTTCGTAATAGCTCTAACGAACAAAGAGAAGGAAGAAGATTTCATGGCGATCAAAGGGTCAAAACTGCCTCAGAGACCCAAAAAACGAGCCAAACTTATTCAACGCACCATCAATGTAAGCAAACCAATCTTCTCCCTTCTTTCCTTTTCCAGATTCTTTCTCACCTTTTTTACTGTTCCTTTTCCATTAATTATTTCTTTTTCTTTTTTTTCCTTGAAAACTAATTCTCATGCGCTATTATTATTATTGCTTCTGCTTTAATTATTTCCTCTCTTTAACCTGATTTTCCCTCGCAAAATCCCCATTTTACGAAATATATATATATTTCCTCGCAATTATTTATCGACAGAAATAAATAAATAATTGGGATTAAATTATAAATTCTTTTAATTAAAAAAAGAACTGGGGGTGAGGATATTCTTGGGGGGGCTGAGAGTGGGGTTTGTGGAATGCCACGTGGAGAGTTGTGATTTGACTGTTATTGCCGAAATTGAAGCCACAATGTGAGTGAATGAATGGGCTAATCAATTACTTACCGACAATGAAGGGGGCCGGAGATGAGTTGTCCTGTCGTGGCGTGGAATAGGCAGTGCTTGGTTTTTTCTGTGTAATAATGATACAATACAAGGGTAGTTGCGTAATAACACTTTTTTTTTTTAATAAAAATAAAATATAATATAATAAAACGTTGTTTGGTCGTTTTGGGATTTATTTAATTTGTGTGTTTGGTTGGGGGTGGCAGCTGGTGAGCCCAGGGACGTGGCTGTGTGATCTAACGCTAGAGAGATACGAAGTTAGGGAGAAGAAGATTTCTAAAAAGGTATAATATCTATTCTTAATTCTTAATTTTTAAATTCATTCAAAAAAATTATATATTAATTTGTAAATTAAAAAAAAATTAAGAAGTTATCTTGTTTGGATGCAGAGACCAAGAGGGCTGAAGGCAATAGTGAACATGGAGTCGGATTCGGAGTGAGAAAGGGAGAGTTTATCATATGAACAGAATCAACAGTGTTTTGTCAAATGATTCGTGGAGAAGAGGGGAAGTTTATGTGAATTATATCATATATTAAAATATATATATATATATGAATATTAGACTTCTCTTGCCTAATGTTACCTTCTTTTTTCTATTTTCTATTTCTGAAATACATGC

mRNA sequence

ATGGAGAAGGATCATCTCAGAATCAATAGCCATGGCAGTTTCGTTAGTAATAATCTCAATGGTAGGGATAGAACGGCCGTGGATAGTTCGCTGTTGTTGCGAGCGAGATCTGAGGCCGCTGCCGCCGCCGTTGCGACCAGGCCACAACCCACACCATCAGAGTTCGTCTTACAATGGGGAAACGGGAAGCGTCTCCGGTGTATGAAAGTCCAGGTCAAGGCCAGGGACGTTTCCGCCGCCGCCGCACCGGTTCACAAAACCACTGTCCGAGTCGATCGGCGGGTCGTTAGAGCCGATAGAGACTCGATTATAAGACAGAACCACCAGCCGAGTCCCATTCATAACTCTAACCACAGTAATGGGCACTTGAATCTTCGTCAACGGCCGATTTCTCCTCAACCGCCAACTCTACCGCCGCCGCCGCCTGCTCCTTCTCAGCGTATTCTTAGGCCATTGAAGAAGAGAGACGAGGTCTCCGACTCTCCCATTTTGTACGCTAATGCTAGGCCGAGGACATTCCCGAACTCTGAGATTTCCGGTGTGATGAAAGGGCAATCCAACGGCGGTGTCAGAGCAATCACTTCACCGGACAGGGTGGCGCCGGAAAAGAGACCGCCGTCTAATCACGACAACCACCACCCCCACCATAAATCCGCCGCTACATCAGACACCAAAAAGGGTGGGTCGTCTTCCGGCAGCGGAGAAGCCCTAGCGCCACCGTCGCAAGGGCAGCCGGCGTGGCCGCCGAAGTTCGTAATAGCTCTAACGAACAAAGAGAAGGAAGAAGATTTCATGGCGATCAAAGGGTCAAAACTGCCTCAGAGACCCAAAAAACGAGCCAAACTTATTCAACGCACCATCAATCTGGTGAGCCCAGGGACGTGGCTGTGTGATCTAACGCTAGAGAGATACGAAGTTAGGGAGAAGAAGATTTCTAAAAAGAGACCAAGAGGGCTGAAGGCAATAGTGAACATGGAGTCGGATTCGGAGTGAGAAAGGGAGAGTTTATCATATGAACAGAATCAACAGTGTTTTGTCAAATGATTCGTGGAGAAGAGGGGAAGTTTATGTGAATTATATCATATATTAAAATATATATATATATATGAATATTAGACTTCTCTTGCCTAATGTTACCTTCTTTTTTCTATTTTCTATTTCTGAAATACATGC

Coding sequence (CDS)

ATGGAGAAGGATCATCTCAGAATCAATAGCCATGGCAGTTTCGTTAGTAATAATCTCAATGGTAGGGATAGAACGGCCGTGGATAGTTCGCTGTTGTTGCGAGCGAGATCTGAGGCCGCTGCCGCCGCCGTTGCGACCAGGCCACAACCCACACCATCAGAGTTCGTCTTACAATGGGGAAACGGGAAGCGTCTCCGGTGTATGAAAGTCCAGGTCAAGGCCAGGGACGTTTCCGCCGCCGCCGCACCGGTTCACAAAACCACTGTCCGAGTCGATCGGCGGGTCGTTAGAGCCGATAGAGACTCGATTATAAGACAGAACCACCAGCCGAGTCCCATTCATAACTCTAACCACAGTAATGGGCACTTGAATCTTCGTCAACGGCCGATTTCTCCTCAACCGCCAACTCTACCGCCGCCGCCGCCTGCTCCTTCTCAGCGTATTCTTAGGCCATTGAAGAAGAGAGACGAGGTCTCCGACTCTCCCATTTTGTACGCTAATGCTAGGCCGAGGACATTCCCGAACTCTGAGATTTCCGGTGTGATGAAAGGGCAATCCAACGGCGGTGTCAGAGCAATCACTTCACCGGACAGGGTGGCGCCGGAAAAGAGACCGCCGTCTAATCACGACAACCACCACCCCCACCATAAATCCGCCGCTACATCAGACACCAAAAAGGGTGGGTCGTCTTCCGGCAGCGGAGAAGCCCTAGCGCCACCGTCGCAAGGGCAGCCGGCGTGGCCGCCGAAGTTCGTAATAGCTCTAACGAACAAAGAGAAGGAAGAAGATTTCATGGCGATCAAAGGGTCAAAACTGCCTCAGAGACCCAAAAAACGAGCCAAACTTATTCAACGCACCATCAATCTGGTGAGCCCAGGGACGTGGCTGTGTGATCTAACGCTAGAGAGATACGAAGTTAGGGAGAAGAAGATTTCTAAAAAGAGACCAAGAGGGCTGAAGGCAATAGTGAACATGGAGTCGGATTCGGAGTGA

Protein sequence

MEKDHLRINSHGSFVSNNLNGRDRTAVDSSLLLRARSEAAAAAVATRPQPTPSEFVLQWGNGKRLRCMKVQVKARDVSAAAAPVHKTTVRVDRRVVRADRDSIIRQNHQPSPIHNSNHSNGHLNLRQRPISPQPPTLPPPPPAPSQRILRPLKKRDEVSDSPILYANARPRTFPNSEISGVMKGQSNGGVRAITSPDRVAPEKRPPSNHDNHHPHHKSAATSDTKKGGSSSGSGEALAPPSQGQPAWPPKFVIALTNKEKEEDFMAIKGSKLPQRPKKRAKLIQRTINLVSPGTWLCDLTLERYEVREKKISKKRPRGLKAIVNMESDSE
Homology
[Close]
BLAST of CmaCh05G001060 vs. TAIR 10
Match: AT1G55340.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-30
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 249 PKFVIALTNKEKEEDFMAIKGSKLPQRPKKRAKLIQRTINLVSPGTWLCDLTLERYEVRE 308
           PK  IAL+NKEKEEDF+A+KG KLPQRPKKRAKL+Q+T+ LVSPG WL DL  ERYEVRE
Sbjct: 124 PKLYIALSNKEKEEDFLAMKGCKLPQRPKKRAKLVQKTLLLVSPGAWLSDLCKERYEVRE 183

Query: 309 KKISKKRPRGLKAIVNMESDSE 331
           KK SKKRPRGLKA+ +MESDSE
Sbjct: 184 KKTSKKRPRGLKAMGSMESDSE 205

[Close]
BLAST of CmaCh05G001060 vs. TAIR 10
Match: AT1G55340.2 (Protein of unknown function (DUF1639) )

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-28
Identity = 77/141 (54.61%), Postives = 94/141 (66.67%), Query Frame = 0 

Query: 199 VAPEKRPPSNHDNHHPHHKSAATSD-------TKKGGSSSGSGEALAPP--SQGQPAWPP 258
           V+ E+  PS H N  P+    A+ +       T+       SG+ +  P     +  W P
Sbjct: 57  VSSERGSPSRHLN-RPNKSFMASPEKEDRYYTTRGSMGIDESGKIIKEPVKETKKHVW-P 116

Query: 259 KFVIALTNKEKEEDFMAIKGSKLPQRPKKRAKLIQRTINLVSPGTWLCDLTLERYEVREK 318
           K  IAL+NKEKEEDF+A+KG KLPQRPKKRAKL+Q+T+ LVSPG WL DL  ERYEVREK
Sbjct: 117 KLYIALSNKEKEEDFLAMKGCKLPQRPKKRAKLVQKTLLLVSPGAWLSDLCKERYEVREK 176

Query: 319 KISKKRPRGLKAIVNMESDSE 331
           K SKKRPRGLKA+ +MESDSE
Sbjct: 177 KTSKKRPRGLKAMGSMESDSE 195

[Close]
BLAST of CmaCh05G001060 vs. TAIR 10
Match: AT3G03880.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-22
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 0 

Query: 201 PEKRPPSNHDNHHPHHKSAATSDTKKGGSSSGSGEALAPPSQGQPAWPPKFVIALTNKEK 260
           P++R PS  +    ++ +    D        G+       ++ +  W PK  I L+NKEK
Sbjct: 65  PDRRRPS-PEKEERYYTTRGVVDNIGKDCLDGNINGEDSNNKEESMW-PKLFITLSNKEK 124

Query: 261 EEDFMAIKGSKLPQRPKKRAKLIQRTINLVSPGTWLCDLTLERYEVREKKISKK-RPRGL 320
           EEDFMA+KG K   RPKKRAKLIQR++ LVSPGTWL DL  +RY+VR KK SKK R RGL
Sbjct: 125 EEDFMAMKGCKPSHRPKKRAKLIQRSLLLVSPGTWLADLCPDRYDVRVKKSSKKRRARGL 184

Query: 321 KAIVNMESDSE 331
           KA+ NME+DS+
Sbjct: 185 KAMGNMETDSD 193

[Close]
BLAST of CmaCh05G001060 vs. TAIR 10
Match: AT4G20300.2 (Protein of unknown function (DUF1639) )

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-21
Identity = 94/284 (33.10%), Postives = 131/284 (46.13%), Query Frame = 0 

Query: 62  GKRLRCMKVQVKARDVSAAAAPVHKTTVRVDRRVVRADRDSIIRQNHQPSPIHNSNHSNG 121
           G R R  + Q + +D S +            R+  RA R  I       +   +S+ S+G
Sbjct: 72  GFRFRSTQQQQQQQDPSPSRRGGDVLLQWGQRKRSRASRAEIRSTTTITTTADDSSSSSG 131

Query: 122 HLNLRQRPISPQ----PPTLPPPPPAP---SQRILRPLKKRDEVSDSPILYANARPRTFP 181
              ++     PQ     P++PPPPPAP   S R   P        +S     N   R+  
Sbjct: 132 QGKIQSN--KPQRRSMNPSMPPPPPAPPIFSGRSTNPRNGFVIGKESFFPSRNLEDRSAN 191

Query: 182 NS----EISGVMKGQSNGGVRAITSPDRVAPEKRPPSNHDNHHPHHKSAATSDTKKGGSS 241
            S     I+G M  +S G  R+  SPD++           N   H +       +   ++
Sbjct: 192 GSPSRNNINGRMISRSGGSKRSPPSPDQIEKRSSVRDQRQNGFDHQQQQHQRVNRSESTA 251

Query: 242 SGSGEA--LAPPSQGQPAWPPKFVIALTNKEKEEDFMAIKGSKLPQRPKKRAKLIQRTIN 301
            G  E        +    W P+  IAL+ KEKEEDF+ +KG+KLP RP+KRAK I + + 
Sbjct: 252 QGHQEVEINGEREKATQEW-PRIYIALSRKEKEEDFLVMKGTKLPHRPRKRAKNIDKALQ 311

Query: 302 LVSPGTWLCDLTLERYEVREKKISKK--RPRGLKAIVNMESDSE 331
              PG WL DLT  RYEVREKK  KK  + RGLK + NM++DSE
Sbjct: 312 FCFPGMWLSDLTKNRYEVREKKNVKKQQKRRGLKGMENMDTDSE 352

[Close]
BLAST of CmaCh05G001060 vs. TAIR 10
Match: AT4G20300.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-17
Identity = 85/266 (31.95%), Postives = 118/266 (44.36%), Query Frame = 0 

Query: 62  GKRLRCMKVQVKARDVSAAAAPVHKTTVRVDRRVVRADRDSIIRQNHQPSPIHNSNHSNG 121
           G R R  + Q + +D S +            R+  RA R  I       +   +S+ S+G
Sbjct: 72  GFRFRSTQQQQQQQDPSPSRRGGDVLLQWGQRKRSRASRAEIRSTTTITTTADDSSSSSG 131

Query: 122 HLNLRQRPISPQ----PPTLPPPPPAP---SQRILRPLKKRDEVSDSPILYANARPRTFP 181
              ++     PQ     P++PPPPPAP   S R   P        +S     N   R+  
Sbjct: 132 QGKIQSN--KPQRRSMNPSMPPPPPAPPIFSGRSTNPRNGFVIGKESFFPSRNLEDRSAN 191

Query: 182 NS----EISGVMKGQSNGGVRAITSPDRVAPEKRPPSNHDNHHPHHKSAATSDTKKGGSS 241
            S     I+G M  +S G  R+  SPD++           N   H +       +   ++
Sbjct: 192 GSPSRNNINGRMISRSGGSKRSPPSPDQIEKRSSVRDQRQNGFDHQQQQHQRVNRSESTA 251

Query: 242 SGSGEA--LAPPSQGQPAWPPKFVIALTNKEKEEDFMAIKGSKLPQRPKKRAKLIQRTIN 301
            G  E        +    W P+  IAL+ KEKEEDF+ +KG+KLP RP+KRAK I + + 
Sbjct: 252 QGHQEVEINGEREKATQEW-PRIYIALSRKEKEEDFLVMKGTKLPHRPRKRAKNIDKALQ 311

Query: 302 LVSPGTWLCDLTLERYEVREKKISKK 315
              PG WL DLT  RYEVREKK  KK
Sbjct: 312 FCFPGMWLSDLTKNRYEVREKKNVKK 334

The following BLAST results are available for this feature:
BLAST of CmaCh05G001060 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh05G001060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55340.12.4e-3078.05Protein of unknown function (DUF1639) [more]
AT1G55340.21.7e-2854.61Protein of unknown function (DUF1639) [more]
AT3G03880.16.9e-2249.62Protein of unknown function (DUF1639) [more]
AT4G20300.22.0e-2133.10Protein of unknown function (DUF1639) [more]
AT4G20300.11.8e-1731.95Protein of unknown function (DUF1639) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 322..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..238
NoneNo IPR availablePANTHERPTHR33130PUTATIVE (DUF1639)-RELATEDcoord: 1..330
NoneNo IPR availablePANTHERPTHR33130:SF45INTEGRATOR COMPLEX SUBUNIT 6 HOMOLOGcoord: 1..330
IPR012438Protein of unknown function DUF1639PFAMPF07797DUF1639coord: 255..304
e-value: 1.1E-22
score: 79.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G001060.1CmaCh05G001060.1mRNA