CmaCh03G005740 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G005740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr03: 5236160 .. 5236460 (-)
RNA-Seq ExpressionCmaCh03G005740
SyntenyCmaCh03G005740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGAACTTGAACTGCAAAGTGAAGAGATCAGGGCCGTACAGCTGTATAAACCATGTTCGATACAGTGAAGTTACGGTGTAACTGGTGCACCAGAGCATTATCGGCTTCTAAATAGGAAAGTGTTATTACCATCTGCAGAAATTTCGCAGTGGTTGGTGGTGACGACTCCGACGTGAACTACTTCAATTTTCTTCCCCTTTCATTCTTCACGTTCTCTCCCACCTTCGCCGATCGCCGATCGCCGCCCGCTGTACCTGCCTTCTATCTATTTATGTGCTCCGGCTTTTCACGTTGA

mRNA sequence

ATGGGGATGAACTTGAACTGCAAAGTGAAGAGATCAGGGCCGTACAGCTGTATAAACCATGTTCGATACAGTGAAGTTACGGTAAATTTCGCAGTGGTTGGTGGTGACGACTCCGACGTGAACTACTTCAATTTTCTTCCCCTTTCATTCTTCACGTTCTCTCCCACCTTCGCCGATCGCCGATCGCCGCCCGCTGTACCTGCCTTCTATCTATTTATGTGCTCCGGCTTTTCACGTTGA

Coding sequence (CDS)

ATGGGGATGAACTTGAACTGCAAAGTGAAGAGATCAGGGCCGTACAGCTGTATAAACCATGTTCGATACAGTGAAGTTACGGTAAATTTCGCAGTGGTTGGTGGTGACGACTCCGACGTGAACTACTTCAATTTTCTTCCCCTTTCATTCTTCACGTTCTCTCCCACCTTCGCCGATCGCCGATCGCCGCCCGCTGTACCTGCCTTCTATCTATTTATGTGCTCCGGCTTTTCACGTTGA

Protein sequence

MGMNLNCKVKRSGPYSCINHVRYSEVTVNFAVVGGDDSDVNYFNFLPLSFFTFSPTFADRRSPPAVPAFYLFMCSGFSR
Homology
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BLAST of CmaCh03G005740 vs. NCBI nr
Match: KAG6603818.1 (E3 ubiquitin-protein ligase UPL5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0 

Query: 1  MGMNLNCKVKRSGPYSCINHVRYSEVTVNFAVVGGDDSDVNYFNFLPLSFFTFSPTFADR 60
          MGMNLNCKV+RSGPYSCINHVRYSEVTVNFAVVG DDSDVNYFNFLPLSFFTFSPTFADR
Sbjct: 1  MGMNLNCKVERSGPYSCINHVRYSEVTVNFAVVGDDDSDVNYFNFLPLSFFTFSPTFADR 60

Query: 61 RSPPAVPAFYL 72
          R PP +P+ YL
Sbjct: 61 R-PPYLPSIYL 70

The following BLAST results are available for this feature:
BLAST of CmaCh03G005740 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G005740 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G005740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603818.12.5e-2890.14E3 ubiquitin-protein ligase UPL5, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of CmaCh03G005740 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G005740.1CmaCh03G005740.1mRNA