Cla97C11G213840 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G213840
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	COP9 signalosome complex subunit 3
Location	Cla97Chr11: 7390553 .. 7391176 (-)
RNA-Seq Expression	Cla97C11G213840
Synteny	Cla97C11G213840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACGGTTGAAGTTCTCGTGGCACAAATCCAAGGTTTGTCCAGTACCGCCGGTGATATCTCCCGCCTCCACACCCTCCTCAAACAATCAGAAGAACTACTTCACGCCGAAACCTCTCGTTTACCTTCCGCATTAGCTCAACTTGATGCTTCCAAACATTCTTTAGGATATCTTTATATTCTGTAAGTTTTTCTTTCTTCTCTGAATTATTCTATCTGGGTGTTGGTTGTTTACGCAAATTAGGGCCCGCCTACGCTGAATGTTACACTACTATTGACGATTCCTTCCTATCAGTGACTGCTTTTGTTGAACCATCATTTCTTTTGGTAAAATTTTGAAGGGATGCAGTCCCAGAATTGGTGTTTGTATCGAGTTTCCAACGATGGGATAACACCCATCTTGGATACGCCCTCTGACTATTCTAGTTATTTGAAACTGCCTGGCTTTGATTTGAGTATATGGTTGCTTGAATATGTATGCAGAGGAGATTGATCCATAATATTTCCTTTAACTATATTCGCAGAGAGGCGTGCACATCTGTACCAATTTCACAAGAGCAAACCAGTTCTATTGTTCTAACTATTTCAAGATTTATATCTTCTTGCAATCCTGAGCAGATTC

mRNA sequence

ATGGGCACGGTTGAAGTTCTCGTGGCACAAATCCAAGGTTTGTCCAGTACCGCCGGTGATATCTCCCGCCTCCACACCCTCCTCAAACAATCAGAAGAACTACTTCACGCCGAAACCTCTCGTTTACCTTCCGCATTAGCTCAACTTGATGCTTCCAAACATTCTTTAGGATATCTTTATATTCTAGAGGCGTGCACATCTGTACCAATTTCACAAGAGCAAACCAGTTCTATTGTTCTAACTATTTCAAGATTTATATCTTCTTGCAATCCTGAGCAGATTC

Coding sequence (CDS)

ATGGGCACGGTTGAAGTTCTCGTGGCACAAATCCAAGGTTTGTCCAGTACCGCCGGTGATATCTCCCGCCTCCACACCCTCCTCAAACAATCAGAAGAACTACTTCACGCCGAAACCTCTCGTTTACCTTCCGCATTAGCTCAACTTGATGCTTCCAAACATTCTTTAGGATATCTTTATATTCTAGAGGCGTGCACATCTGTACCAATTTCACAAGAGCAAACCAGTTCTATTGTTCTAACTATTTCAAGATTTATATCTTCTTGCAATCCTGAGCAGATTC

Protein sequence

MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLYILEACTSVPISQEQTSSIVLTISRFISSCNPEQI

Homology

[Close]

BLAST of Cla97C11G213840 vs. NCBI nr
Match: XP_016899451.1 (PREDICTED: COP9 signalosome complex subunit 3 isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          MGTVEVLVAQIQGLS+TAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 1  MGTVEVLVAQIQGLSTTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQEQ+SSI+LTISRFISSCNPEQI
Sbjct: 61 ILEACTSVPISQEQSSSILLTISRFISSCNPEQI 94

[Close]

BLAST of Cla97C11G213840 vs. NCBI nr
Match: XP_008441368.1 (PREDICTED: COP9 signalosome complex subunit 3 isoform X1 [Cucumis melo] >KAA0056600.1 COP9 signalosome complex subunit 3 isoform X1 [Cucumis melo var. makuwa] >TYK24283.1 COP9 signalosome complex subunit 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          MGTVEVLVAQIQGLS+TAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 1  MGTVEVLVAQIQGLSTTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQEQ+SSI+LTISRFISSCNPEQI
Sbjct: 61 ILEACTSVPISQEQSSSILLTISRFISSCNPEQI 94

[Close]

BLAST of Cla97C11G213840 vs. NCBI nr
Match: XP_004138469.2 (COP9 signalosome complex subunit 3 [Cucumis sativus] >KGN45722.1 hypothetical protein Csa_005758 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
           MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 64  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 123

Query: 61  ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
           ILEACTSVPISQEQ+SSI+LTISRFIS CNPEQI
Sbjct: 124 ILEACTSVPISQEQSSSILLTISRFISCCNPEQI 157

[Close]

BLAST of Cla97C11G213840 vs. NCBI nr
Match: XP_038886130.1 (COP9 signalosome complex subunit 3 [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 3.7e-39
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          MGTVEVLVAQIQGLSSTA DISRLHTLLKQSEELLH+ETSRLPSALAQLDASKHSLGYLY
Sbjct: 1  MGTVEVLVAQIQGLSSTAADISRLHTLLKQSEELLHSETSRLPSALAQLDASKHSLGYLY 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQEQ+SSIVLTISRFISSCNPEQI
Sbjct: 61 ILEACTSVPISQEQSSSIVLTISRFISSCNPEQI 94

[Close]

BLAST of Cla97C11G213840 vs. NCBI nr
Match: KAG6578376.1 (COP9 signalosome complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 85/94 (90.43%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          M TVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHA+T+RLPSALAQLDAS+HSLGYL+
Sbjct: 1  MATVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHADTARLPSALAQLDASEHSLGYLF 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQ+Q+SSI+LTISRFISSCN EQI
Sbjct: 61 ILEACTSVPISQDQSSSIILTISRFISSCNQEQI 94

[Close]

BLAST of Cla97C11G213840 vs. ExPASy Swiss-Prot
Match: Q8W575 (COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=CSN3 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-15
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          + +VE ++  IQGLS +  D+S LH LL+ +++ L AE     S L QLDASKHSLGYLY
Sbjct: 5  VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
           LE  T  P+S+E+ +  +  I+RFI+SC+  QI
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQI 98

[Close]

BLAST of Cla97C11G213840 vs. ExPASy Swiss-Prot
Match: Q7ZTN8 (COP9 signalosome complex subunit 3 OS=Xenopus laevis OX=8355 GN=cops3 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.9e-04
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 4  VEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLYILE 63
          +E  V  ++ LSS  G +++L  L+ +S ELL    S L + L  LD  +HSLG L +L 
Sbjct: 5  LEQFVNSVRQLSS-QGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF 64

Query: 64 ACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
             S+P S     ++   +  FIS+CN E I
Sbjct: 65 VKFSMP-SIPDFETLFSQVQLFISTCNGEHI 93

[Close]

BLAST of Cla97C11G213840 vs. ExPASy Swiss-Prot
Match: Q28IV6 (COP9 signalosome complex subunit 3 OS=Xenopus tropicalis OX=8364 GN=cops3 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.9e-04
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 4  VEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLYILE 63
          +E  V  ++ LSS  G +++L  L+ +S ELL    S L + L  LD  +HSLG L +L 
Sbjct: 5  LEQFVNSVRQLSS-QGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF 64

Query: 64 ACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
             S+P S     ++   +  FIS+CN E I
Sbjct: 65 VKFSMP-SIPDFETLFSQVQLFISTCNGEHI 93

[Close]

BLAST of Cla97C11G213840 vs. ExPASy TrEMBL
Match: A0A5A7UNF8 (COP9 signalosome complex subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00480 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.0e-40
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          MGTVEVLVAQIQGLS+TAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 1  MGTVEVLVAQIQGLSTTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQEQ+SSI+LTISRFISSCNPEQI
Sbjct: 61 ILEACTSVPISQEQSSSILLTISRFISSCNPEQI 94

[Close]

BLAST of Cla97C11G213840 vs. ExPASy TrEMBL
Match: A0A1S3B2T4 (COP9 signalosome complex subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485502 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.0e-40
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          MGTVEVLVAQIQGLS+TAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 1  MGTVEVLVAQIQGLSTTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQEQ+SSI+LTISRFISSCNPEQI
Sbjct: 61 ILEACTSVPISQEQSSSILLTISRFISSCNPEQI 94

[Close]

BLAST of Cla97C11G213840 vs. ExPASy TrEMBL
Match: A0A1S4DTY7 (COP9 signalosome complex subunit 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485502 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.0e-40
Identity = 91/94 (96.81%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          MGTVEVLVAQIQGLS+TAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 1  MGTVEVLVAQIQGLSTTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQEQ+SSI+LTISRFISSCNPEQI
Sbjct: 61 ILEACTSVPISQEQSSSILLTISRFISSCNPEQI 94

[Close]

BLAST of Cla97C11G213840 vs. ExPASy TrEMBL
Match: A0A0A0KBF0 (PCI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G008050 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
           MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY
Sbjct: 64  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 123

Query: 61  ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
           ILEACTSVPISQEQ+SSI+LTISRFIS CNPEQI
Sbjct: 124 ILEACTSVPISQEQSSSILLTISRFISCCNPEQI 157

[Close]

BLAST of Cla97C11G213840 vs. ExPASy TrEMBL
Match: A0A6J1FEQ3 (COP9 signalosome complex subunit 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444821 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.3e-37
Identity = 85/94 (90.43%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          M TVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHA+T+RLPSALAQLDAS+HSLGYL+
Sbjct: 1  MATVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHADTARLPSALAQLDASEHSLGYLF 60

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
          ILEACTSVPISQ+Q+SSI+LTISRFISSCN EQI
Sbjct: 61 ILEACTSVPISQDQSSSIILTISRFISSCNQEQI 94

[Close]

BLAST of Cla97C11G213840 vs. TAIR 10
Match: AT5G14250.1 (Proteasome component (PCI) domain protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-16
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          + +VE ++  IQGLS +  D+S LH LL+ +++ L AE     S L QLDASKHSLGYLY
Sbjct: 5  VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
           LE  T  P+S+E+ +  +  I+RFI+SC+  QI
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQI 98

[Close]

BLAST of Cla97C11G213840 vs. TAIR 10
Match: AT5G14250.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-16
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60
          + +VE ++  IQGLS +  D+S LH LL+ +++ L AE     S L QLDASKHSLGYLY
Sbjct: 5  VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61 ILEACTSVPISQEQTSSIVLTISRFISSCNPEQI 95
           LE  T  P+S+E+ +  +  I+RFI+SC+  QI
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQI 98

The following BLAST results are available for this feature:

BLAST of Cla97C11G213840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899451.1	1.7e-39	96.81	PREDICTED: COP9 signalosome complex subunit 3 isoform X2 [Cucumis melo]	[more]
XP_008441368.1	1.7e-39	96.81	PREDICTED: COP9 signalosome complex subunit 3 isoform X1 [Cucumis melo] >KAA0056...	[more]
XP_004138469.2	2.8e-39	96.81	COP9 signalosome complex subunit 3 [Cucumis sativus] >KGN45722.1 hypothetical pr...	[more]
XP_038886130.1	3.7e-39	96.81	COP9 signalosome complex subunit 3 [Benincasa hispida]	[more]
KAG6578376.1	1.7e-36	90.43	COP9 signalosome complex subunit 3, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of Cla97C11G213840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W575	3.9e-15	47.87	COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=CSN3 PE=1 ...	[more]
Q7ZTN8	6.9e-04	36.26	COP9 signalosome complex subunit 3 OS=Xenopus laevis OX=8355 GN=cops3 PE=2 SV=1	[more]
Q28IV6	6.9e-04	36.26	COP9 signalosome complex subunit 3 OS=Xenopus tropicalis OX=8364 GN=cops3 PE=2 S...	[more]

BLAST of Cla97C11G213840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNF8	8.0e-40	96.81	COP9 signalosome complex subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B2T4	8.0e-40	96.81	COP9 signalosome complex subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A1S4DTY7	8.0e-40	96.81	COP9 signalosome complex subunit 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0KBF0	1.4e-39	96.81	PCI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G008050 PE=4 SV...	[more]
A0A6J1FEQ3	8.3e-37	90.43	COP9 signalosome complex subunit 3-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]

BLAST of Cla97C11G213840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14250.1	2.8e-16	47.87	Proteasome component (PCI) domain protein	[more]
AT5G14250.2	2.8e-16	47.87	Proteasome component (PCI) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10758	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	coord: 1..94
None	No IPR available	PANTHER	PTHR10758:SF14	COP9 SIGNALOSOME COMPLEX SUBUNIT 3-LIKE ISOFORM X1	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G213840.1	Cla97C11G213840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010971	positive regulation of G2/M transition of mitotic cell cycle
biological_process	GO:0000338	protein deneddylation
cellular_component	GO:0005737	cytoplasm