Cla97C11G206440 (gene) Watermelon (97103) v2.5

Overview


Name	Cla97C11G206440
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	Cla97Chr11: 95947 .. 96171 (-)
RNA-Seq Expression	Cla97C11G206440
Synteny	Cla97C11G206440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCGGACGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATTGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGGGTGGCGTGACGGAACTGATTGGTGAGCATCGGATGCTTCCTCCACTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGA

mRNA sequence

ATGGGTGGCGGACGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATTGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGGGTGGCGTGACGGAACTGATTGGTGAGCATCGGATGCTTCCTCCACTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGA

Coding sequence (CDS)

ATGGGTGGCGGACGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATTGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGGGTGGCGTGACGGAACTGATTGGTGAGCATCGGATGCTTCCTCCACTCATCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGA

Protein sequence

MGGGRCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSRRSQRLIRH

Homology

[Close]

BLAST of Cla97C11G206440 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MGGGRCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISP 60
          MGGG CIGMVVVRRRGRIDPVV+LLADKVDAES+EGDAEARGG+TELIG+H MLPP ISP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Cla97C11G206440 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGGGRCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISP 60
          MGGG  I MV+VR R R+DPV+ LLA+KVDAES+E DAEAR G++ELIGEHRMLPPL+ P
Sbjct: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELS RSQRLIRH
Sbjct: 61 PEELSSRSQRLIRH 74

[Close]

BLAST of Cla97C11G206440 vs. NCBI nr
Match: KYP52102.1 (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSR 67
          VRRR RI+ VVDLLAD+VDA+ DEGDAE RGGVT+LI +HRMLPP I  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]

BLAST of Cla97C11G206440 vs. NCBI nr
Match: RDX82049.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial [Mucuna pruriens])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSRRSQR 71
          VRRR RI+ VVDL  D+V+A+ DEGDA+ARGGVTELI +HRMLPP I PPEEL R   R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSR 75

[Close]

BLAST of Cla97C11G206440 vs. NCBI nr
Match: KAG4941981.1 (hypothetical protein JHK85_046627 [Glycine max] >KAG5101125.1 hypothetical protein JHK84_046094 [Glycine max])

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 14 RRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSR 67
          R G I+P+VDL AD+VD E D+GDA+ARGGV ELIGEHRMLPP I  PEELS+
Sbjct: 2  RIGSIEPIVDLFADEVDTEGDDGDAKARGGVAELIGEHRMLPPCIPSPEELSK 54

[Close]

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MGGGRCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISP 60
          MGGG CIGMVVVRRRGRIDPVV+LLADKVDAES+EGDAEARGG+TELIG+H MLPP ISP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MGGGRCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISP 60
          MGGG CIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEAR GVTELIG+H MLPP ISP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 75
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL
Match: A0A151SBB2 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSR 67
          VRRR RI+ VVDLLAD+VDA+ DEGDAE RGGVT+LI +HRMLPP I  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL
Match: A0A371FUN4 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens OX=157652 GN=ISPD PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-13
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSRRSQR 71
          VRRR RI+ VVDL  D+V+A+ DEGDA+ARGGVTELI +HRMLPP I PPEEL R   R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSR 75

[Close]

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL
Match: A0A5N5HLF1 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042700 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.1e-11
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 19 DPVVDLLADKVDAESDEGDAEARGGVTELIGEHRMLPPLISPPEELSRRSQRLIRH 75
          + VVDLLAD+VDAE +E DA+A  GV ELIGEHRMLPPL+ PPEEL  R Q   RH
Sbjct: 18 EAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPPEELPCRKQFSFRH 73

The following BLAST results are available for this feature:

BLAST of Cla97C11G206440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054191.1	2.3e-28	90.54	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAG6597022.1	1.6e-21	75.68	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KYP52102.1	2.7e-13	76.36	hypothetical protein KK1_026012, partial [Cajanus cajan]	[more]
RDX82049.1	1.4e-12	69.49	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic, partial...	[more]
KAG4941981.1	3.0e-12	71.70	hypothetical protein JHK85_046627 [Glycine max] >KAG5101125.1 hypothetical prote...	[more]

BLAST of Cla97C11G206440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	1.1e-28	90.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	1.4e-26	87.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A151SBB2	1.3e-13	76.36	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 S...	[more]
A0A371FUN4	6.6e-13	69.49	4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens...	[more]
A0A5N5HLF1	8.1e-11	67.86	4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus ...	[more]

BLAST of Cla97C11G206440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G206440.1	Cla97C11G206440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050518	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity