Chy3G050250 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G050250
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transcription termination factor MTERF8
Location	chrH03: 525320 .. 526392 (-)
RNA-Seq Expression	Chy3G050250
Synteny	Chy3G050250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATTTTCTCCGCAAACCTTCTCCACTACGTCTCTTTGCTCAAGACCTTCGGAATTTCACACACAACAACACCACTATTGGCTTCATTTCCTTTCTTCTCTCTCTCAATCCCCTCAATCAACCAACGATCGGACAATCGATTACCTCATCCACACCATTGGCCTCTCCAAGGATTCAGCTCTTGCCGCTGCCAAGAAAATCCATCTCAAACCAACCTCGGATCCCGACTCCGTTCTTGCTCTCTTTAACGCCTATGGATTCACGCCCTCCCAGACCGCCAACATCTTTCGCAGATAACCCAGTCTCATCCTTGCCGATCCGGACACAACACTCAAGCCCAAATTCTAGTTTCTCTCCAAAAACGGCATATCTGGTAACTTTCTGGCCGACTTAATCTGTAGGGAGCCACATATTCTTCGAAGCAGCCTGGACAAGAAGATTGTTCCATGTATTGATTTTCTAATAAATTTCTTTGGGTCTACTGATTGTATTGTTTCGCTATTTTCTACTACACATAGGACTCGTGTTTTGCACACGTTTTCTGAATTTGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGTGTGCTCGATTCGAACATTGCTATACTGTTTTGGAAGCGCCCGGTTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACCAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTTATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAAATGGTTATCGAAACTGCATATAAGTTTTGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAGCCTTGTTTCATGAATAGGTCCGAAGAGGGTTTAAAAAGGGCATTGGATTTCTATATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGGTACCCAATTGTGCTCATGCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATGTCAAAAGGTTTAACCAAGAGGAAGAGTCTTGGCTTGGCATTGAAAATTCCGAGCAGAAGTTCTTGGAGAAGTTTGTGA

mRNA sequence

ATGACCAATTTTCTCCGCAAACCTTCTCCACTACGTCTCTTTGCTCAAGACCTTCGGAATTTCACACACAACAACACCACTATTGGCTTCATTTCCTTTCTTCTCTCTCTCAATCCCCTCAATCAACCAACGATCGGACAATCGATTACCTCATCCACACCATTGGCCTCTCCAAGGATTCAGCTCTTGCCGCTGCCAAGAAAATCCATCTCAAACCAACCTCGGATCCCGACTCCGTTCTTGCTCTCTTTAACGCCTATGGATTCACGCCCTCCCAGACCGCCAACATCTTTCGCAGATAACCCAGTCTCATCCTTGCCGATCCGGACACAACACTCAAGCCCAAATTCTAGTTTCTCTCCAAAAACGGCATATCTGGGAGCCACATATTCTTCGAAGCAGCCTGGACAAGAAGATTGTTCCATGACTCGTGTTTTGCACACGTTTTCTGAATTTGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGTGTGCTCGATTCGAACATTGCTATACTGTTTTGGAAGCGCCCGGTTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACCAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTTATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAAATGGTTATCGAAACTGCATATAAGTTTTGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAGCCTTGTTTCATGAATAGGTCCGAAGAGGGTTTAAAAAGGGCATTGGATTTCTATATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGGTACCCAATTGTGCTCATGCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATGTCAAAAGGTTTAACCAAGAGGAAGAGTCTTGGCTTGGCATTGAAAATTCCGAGCAGAAGTTCTTGGAGAAGTTTGTGA

Coding sequence (CDS)

ATGACCAATTTTCTCCGCAAACCTTCTCCACTACGTCTCTTTGCTCAAGACCTTCGGAATTTCACACACAACAACACCACTATTGGCTTCATTTCCTTTCTTCTCTCTCTCAATCCCCTCAATCAACCAACGATCGGACAATCGATTACCTCATCCACACCATTGGCCTCTCCAAGGATTCAGCTCTTGCCGCTGCCAAGAAAATCCATCTCAAACCAACCTCGGATCCCGACTCCGTTCTTGCTCTCTTTAACGCCTATGGATTCACGCCCTCCCAGACCGCCAACATCTTTCGCAGATAACCCAGTCTCATCCTTGCCGATCCGGACACAACACTCAAGCCCAAATTCTAGTTTCTCTCCAAAAACGGCATATCTGGGAGCCACATATTCTTCGAAGCAGCCTGGACAAGAAGATTGTTCCATGACTCGTGTTTTGCACACGTTTTCTGAATTTGTGGCTCCTAATATCGAAGTATTGAGAGCTAATGGTGTGCTCGATTCGAACATTGCTATACTGTTTTGGAAGCGCCCGGTTGCACTCTCCAGGGATGTGGAATGGTTTACTGACATTGTCGAGAAGACCAAGGAAAGGGGGTTCAATCCTTCGAGTTTGATGTTTATTTATGGGCTGTGTATAGTTTCATCGATGAGCAAGGACAAATGGTTATCGAAACTGCATATAAGTTTTGGGTGGTCAGATGAGCAGTTTCAATCTATGTTTCTCAAGCAGCCTTGTTTCATGAATAGGTCCGAAGAGGGTTTAAAAAGGGCATTGGATTTCTATATGAACAAATGGGACTGGACACGGGAAGAAATTTACAGGTACCCAATTGTGCTCATGCTTAGTTTTGAAAAGAGGGTGATGCCTAGGTCGTCTATCCTTCAGCACCTCATGTCAAAAGGTTTAACCAAGAGGAAGAGTCTTGGCTTGGCATTGAAAATTCCGAGCAGAAGTTCTTGGAGAAGTTTGTGA

Protein sequence

MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSITSSTPLASPRIQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIRTQHSSPNSSFSPKTAYLGATYSSKQPGQEDCSMTRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPSSLMFIYGLCIVSSMSKDKWLSKLHISFGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKIPSRSSWRSL*

Homology

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BLAST of Chy3G050250 vs. ExPASy TrEMBL
Match: A0A0A0LQN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 2.2e-92
Identity = 207/357 (57.98%), Postives = 234/357 (65.55%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSITSST-PLASPR 60
           M NFLRKPS LRL+AQDLRNF HN TTIG ++FL SL+   Q T  +++      +   +
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIG-LNFLSSLSQSPQSTNHRTLDYLIHTIGLSK 60

Query: 61  IQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIRTQHSSPNSSF 120
              L   +K        P   L         P +    F   P      R   + P+ + 
Sbjct: 61  DSALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQP------RLLLADPDKTL 120

Query: 121 SPKTAYLGATYSS---------KQP----------------------GQEDCSM------ 180
            PK  +L     S         ++P                      G  DC +      
Sbjct: 121 KPKFEFLSKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTT 180

Query: 181 --TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGF 240
             TRVLHTFSEF+APNIEVLRANGV DS+IA LFWKRPVALSRDV+WFTDIVEKTKERGF
Sbjct: 181 HRTRVLHTFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGF 240

Query: 241 NPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSEEGLKRA 300
           NPSSLMFI GLCIVSSMSKD+WLSKLHI  S+GWSDEQFQSMFLKQPCFMNRSEEGLKRA
Sbjct: 241 NPSSLMFINGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRA 300

Query: 301 LDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKI 316
           LDF+MNKWDWTREEIYRYPIVL+LSFEKRVMPRSSILQHL+SKGL KRKSLG+ALKI
Sbjct: 301 LDFFMNKWDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKI 350

[Close]

BLAST of Chy3G050250 vs. ExPASy TrEMBL
Match: A0A0A0LK19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 192/367 (52.32%), Postives = 226/367 (61.58%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLN----PLNQPTIGQSI------T 60
           MTNFL KPS LRLFAQDLR+FTHNNTTIG + FL SL+      N PT+   I       
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIG-LKFLSSLSQTPQSTNDPTVDYLIHTIGLSK 60

Query: 61  SSTPLASPRIQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIRT 120
           +S   A+ +I+L P            P   L         P    + F+  P   L    
Sbjct: 61  ASALAAAKQIRLKPTAH---------PDSVLALFNAYGFTPSHIASIFSRRPSLLL---- 120

Query: 121 QHSSPNSSFSPKTAYLG---------ATYSSKQP----------------------GQED 180
             ++P+++  PK  +L          A    + P                      G  D
Sbjct: 121 --ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTD 180

Query: 181 CSM--------TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDI 240
           C +        TRVLHTFSEFVAPNIEVLRANGVLDSNIA L W RP+ALSRDVEWFTDI
Sbjct: 181 CIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDI 240

Query: 241 VEKTKERGFNPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMN 300
           VEKT+ERGFNPSSLMFI+GLC +SSMSKDKWLSKLH+  SFGWSDEQFQSMFLK+P  MN
Sbjct: 241 VEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMN 300

Query: 301 RSEEGLKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSL 317
            SEE LKRALDF++ KWDWT E+I +Y ++L  S EKR++PRSSILQHL+SKG  KRKS+
Sbjct: 301 SSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSV 351

[Close]

BLAST of Chy3G050250 vs. ExPASy TrEMBL
Match: A0A5A7UKN0 (Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00090 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-72
Identity = 178/352 (50.57%), Postives = 218/352 (61.93%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSITSST-PLASPR 60
           M N L KPS LRLFAQDL+NFTHNNTTIG +  L SL+   Q T  +++      +  P+
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIG-LKLLSSLSQTPQSTNDRTLDYLVHTIGLPK 60

Query: 61  IQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFAD-------NPVSSLPIRTQH 120
              L   +K+       P   L         P    + F+        NP ++L  + + 
Sbjct: 61  DSALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEF 120

Query: 121 SSPNS-------SFSPKTAYLGATYSSKQP-----------GQEDCSM--------TRVL 180
            S N        +   +  Y+ +    KQ            G  D  +        TRVL
Sbjct: 121 LSKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVL 180

Query: 181 HTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPSSLM 240
            TFSE +APNIEVLRANGVLDSNIA +   RP+ALSRDVE F DIVEK KE G NPSSLM
Sbjct: 181 ETFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLM 240

Query: 241 FIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFYMN 300
           FI+GLC++SSMSKDKWLSK+H+  SFGWSDEQFQSMFLKQP FM RSEE LKR LDF+MN
Sbjct: 241 FIHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMN 300

Query: 301 KWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKIP 317
           KWDWTRE+I +Y ++L LS EKRV+PRSSI++HL+SKG  KRKS G+AL+ P
Sbjct: 301 KWDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRP 351

[Close]

BLAST of Chy3G050250 vs. ExPASy TrEMBL
Match: A0A1S3BCI2 (transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488160 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-72
Identity = 178/352 (50.57%), Postives = 218/352 (61.93%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSITSST-PLASPR 60
           M N L KPS LRLFAQDL+NFTHNNTTIG +  L SL+   Q T  +++      +  P+
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIG-LKLLSSLSQTPQSTNDRTLDYLVHTIGLPK 60

Query: 61  IQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFAD-------NPVSSLPIRTQH 120
              L   +K+       P   L         P    + F+        NP ++L  + + 
Sbjct: 61  DSALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEF 120

Query: 121 SSPNS-------SFSPKTAYLGATYSSKQP-----------GQEDCSM--------TRVL 180
            S N        +   +  Y+ +    KQ            G  D  +        TRVL
Sbjct: 121 LSKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVL 180

Query: 181 HTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPSSLM 240
            TFSE +APNIEVLRANGVLDSNIA +   RP+ALSRDVE F DIVEK KE G NPSSLM
Sbjct: 181 ETFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLM 240

Query: 241 FIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFYMN 300
           FI+GLC++SSMSKDKWLSK+H+  SFGWSDEQFQSMFLKQP FM RSEE LKR LDF+MN
Sbjct: 241 FIHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMN 300

Query: 301 KWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKIP 317
           KWDWTRE+I +Y ++L LS EKRV+PRSSI++HL+SKG  KRKS G+AL+ P
Sbjct: 301 KWDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRP 351

[Close]

BLAST of Chy3G050250 vs. ExPASy TrEMBL
Match: A0A5A7V906 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001540 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 6.8e-70
Identity = 173/360 (48.06%), Postives = 212/360 (58.89%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSITSST-PLASPR 60
           M N L KPS LR FAQDLRNFTHNNTTIG + FL SL+   Q T  ++       +  P+
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIG-LKFLSSLSQTPQSTNDRTQDYLVHTIGLPK 60

Query: 61  IQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIRTQHSSPNSSF 120
              L   +K        P   L         P    + F+      L      + P+++ 
Sbjct: 61  DSALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLL------ADPDTTL 120

Query: 121 SPKTAYLG---------ATYSSKQP----------------------GQEDCSM------ 180
            PK  +L          A    + P                      G  D  +      
Sbjct: 121 KPKIEFLSKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAG 180

Query: 181 --TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGF 240
             TRVL TFSE +APN+EVLRANGV DSNIA +   RP+ALS+DVE F DIVEKTKE G 
Sbjct: 181 GGTRVLETFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGL 240

Query: 241 NPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSEEGLKRA 300
           NPSSLMFI+G+C+++SMSKDKWLSK+H+  SFGWSDEQFQSMFLKQP FM RSEE LKR 
Sbjct: 241 NPSSLMFIHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRM 300

Query: 301 LDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKIPSR 319
           LDF+MNKWDWT E++ +YP++L LS EKRV+PRSSI+Q L+SKG  KRKS G AL+ P +
Sbjct: 301 LDFFMNKWDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQ 353

[Close]

BLAST of Chy3G050250 vs. NCBI nr
Match: XP_004138819.1 (uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical protein Csa_022198 [Cucumis sativus])

HSP 1 Score: 349 bits (896), Expect = 1.11e-115
Identity = 214/367 (58.31%), Postives = 239/367 (65.12%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPT-----------IGQSI 60
           M NFLRKPS LRL+AQDLRNF HN TTIG ++FL SL+   Q T           IG S 
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIG-LNFLSSLSQSPQSTNHRTLDYLIHTIGLSK 60

Query: 61  TSSTPLASPRIQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIR 120
            S+   A+ +I L P      S+ P      L         P +    F   P      R
Sbjct: 61  DSAL-AAAKKIHLKP------SSDP---DSVLALFNAYGFTPSQTANIFCRQP------R 120

Query: 121 TQHSSPNSSFSPKTAYLGATYSS---------KQP----------------------GQE 180
              + P+ +  PK  +L     S         ++P                      G  
Sbjct: 121 LLLADPDKTLKPKFEFLSKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGST 180

Query: 181 DCSM--------TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTD 240
           DC +        TRVLHTFSEF+APNIEVLRANGV DS+IA LFWKRPVALSRDV+WFTD
Sbjct: 181 DCIVSLFCTTHRTRVLHTFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTD 240

Query: 241 IVEKTKERGFNPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFM 300
           IVEKTKERGFNPSSLMFI GLCIVSSMSKD+WLSKLHI  S+GWSDEQFQSMFLKQPCFM
Sbjct: 241 IVEKTKERGFNPSSLMFINGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFM 300

Query: 301 NRSEEGLKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKS 315
           NRSEEGLKRALDF+MNKWDWTREEIYRYPIVL+LSFEKRVMPRSSILQHL+SKGL KRKS
Sbjct: 301 NRSEEGLKRALDFFMNKWDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKS 350

[Close]

BLAST of Chy3G050250 vs. NCBI nr
Match: XP_004143080.2 (uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical protein Csa_018661 [Cucumis sativus])

HSP 1 Score: 310 bits (794), Expect = 5.59e-100
Identity = 192/367 (52.32%), Postives = 226/367 (61.58%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPL----NQPTIGQSI------T 60
           MTNFL KPS LRLFAQDLR+FTHNNTTIG + FL SL+      N PT+   I       
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIG-LKFLSSLSQTPQSTNDPTVDYLIHTIGLSK 60

Query: 61  SSTPLASPRIQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIRT 120
           +S   A+ +I+L P            P   L         P    + F+  P   L    
Sbjct: 61  ASALAAAKQIRLKPTAH---------PDSVLALFNAYGFTPSHIASIFSRRPSLLL---- 120

Query: 121 QHSSPNSSFSPKTAYLG---------ATYSSKQP----------------------GQED 180
             ++P+++  PK  +L          A    + P                      G  D
Sbjct: 121 --ANPDTTLKPKFEFLSRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTD 180

Query: 181 CSM--------TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDI 240
           C +        TRVLHTFSEFVAPNIEVLRANGVLDSNIA L W RP+ALSRDVEWFTDI
Sbjct: 181 CIVSLFSTAHRTRVLHTFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDI 240

Query: 241 VEKTKERGFNPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMN 300
           VEKT+ERGFNPSSLMFI+GLC +SSMSKDKWLSKLH+  SFGWSDEQFQSMFLK+P  MN
Sbjct: 241 VEKTRERGFNPSSLMFIHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMN 300

Query: 301 RSEEGLKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSL 316
            SEE LKRALDF++ KWDWT E+I +Y ++L  S EKR++PRSSILQHL+SKG  KRKS+
Sbjct: 301 SSEEHLKRALDFFVIKWDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSV 351

[Close]

BLAST of Chy3G050250 vs. NCBI nr
Match: XP_008444984.1 (PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis melo] >KAA0054069.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa] >TYJ96854.1 transcription termination factor MTERF8 [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (722), Expect = 2.19e-89
Identity = 178/352 (50.57%), Postives = 218/352 (61.93%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSITSST-PLASPR 60
           M N L KPS LRLFAQDL+NFTHNNTTIG +  L SL+   Q T  +++      +  P+
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIG-LKLLSSLSQTPQSTNDRTLDYLVHTIGLPK 60

Query: 61  IQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFAD-------NPVSSLPIRTQH 120
              L   +K+       P   L         P    + F+        NP ++L  + + 
Sbjct: 61  DSALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEF 120

Query: 121 SSPNS-------SFSPKTAYLGATYSSKQP-----------GQEDCSM--------TRVL 180
            S N        +   +  Y+ +    KQ            G  D  +        TRVL
Sbjct: 121 LSKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVL 180

Query: 181 HTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPSSLM 240
            TFSE +APNIEVLRANGVLDSNIA +   RP+ALSRDVE F DIVEK KE G NPSSLM
Sbjct: 181 ETFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLM 240

Query: 241 FIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFYMN 300
           FI+GLC++SSMSKDKWLSK+H+  SFGWSDEQFQSMFLKQP FM RSEE LKR LDF+MN
Sbjct: 241 FIHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMN 300

Query: 301 KWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKIP 316
           KWDWTRE+I +Y ++L LS EKRV+PRSSI++HL+SKG  KRKS G+AL+ P
Sbjct: 301 KWDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRP 351

[Close]

BLAST of Chy3G050250 vs. NCBI nr
Match: XP_008445328.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis melo] >KAA0064842.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (704), Expect = 1.20e-86
Identity = 177/366 (48.36%), Postives = 218/366 (59.56%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIG--QSITSSTPLASP 60
           M N L KPS LR FAQDLRNFTHNNTTIG + FL SL+   Q T    Q     T +  P
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIG-LKFLSSLSQTPQSTNDRTQDYLVHT-IGLP 60

Query: 61  RIQLLPLPRKSISNQPRIPTPFLLSLTPMDSRPPRPPTSFADNPVSSLPIRTQHS----- 120
           +   L   +K I  +P      +L+L            ++   P     I ++ S     
Sbjct: 61  KDSALAAAKK-IRLKPTADPDSVLALF----------NAYGFTPSHIASIFSKQSCLLLA 120

Query: 121 SPNSSFSPKTAYLG---------ATYSSKQP----------------------GQEDCSM 180
            P+++  PK  +L          A    + P                      G  D  +
Sbjct: 121 DPDTTLKPKIEFLSKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVV 180

Query: 181 --------TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEK 240
                   TRVL TFSE +APN+EVLRANGV DSNIA +   RP+ALS+DVE F DIVEK
Sbjct: 181 LLFSAGGGTRVLETFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEK 240

Query: 241 TKERGFNPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSE 300
           TKE G NPSSLMFI+G+C+++SMSKDKWLSK+H+  SFGWSDEQFQSMFLKQP FM RSE
Sbjct: 241 TKEMGLNPSSLMFIHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSE 300

Query: 301 EGLKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLA 318
           E LKR LDF+MNKWDWT E++ +YP++L LS EKRV+PRSSI+Q L+SKG  KRKS G A
Sbjct: 301 EHLKRMLDFFMNKWDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKA 353

[Close]

BLAST of Chy3G050250 vs. NCBI nr
Match: XP_022951074.1 (uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951076.1 uncharacterized protein LOC111454032 [Cucurbita moschata])

HSP 1 Score: 263 bits (671), Expect = 9.87e-82
Identity = 177/361 (49.03%), Postives = 205/361 (56.79%), Query Frame = 0


Query: 1   MTNFLRKPSPLRLFAQDLRNFTHNNTTIGFISFLLSLNPLNQPTIGQSIT---------- 60
           MTNFL K  PLRLFAQDL+ F  N+TTI    FL SL+ ++Q T  +++           
Sbjct: 1   MTNFLFKV-PLRLFAQDLQKFAGNDTTISR-KFLSSLSEISQSTNNRTVDYLVHTLGFSK 60

Query: 61  SSTPLASPRIQLLPLPRKSISNQPRIPTPF-LLSLTPMDSRPPRPPTSFADNPVSSLPIR 120
            S   A+ RI L     K+ +N   +   F     T  D+      + F  NP   L   
Sbjct: 61  DSALAAAKRIHL-----KTTANPDSVIALFKAYGFTLSDTA-----SIFCRNPNLLLADP 120

Query: 121 TQHSSPNSSFSPKTAYLG---ATYSSKQP----------------------GQEDCSM-- 180
                P   F  +  + G       S+ P                      G  D  +  
Sbjct: 121 DTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSL 180

Query: 181 ------TRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTK 240
                 T VL  FSE VAPNIE+LRANGV DS IA +FW RP  L+RD E F+DIVEKTK
Sbjct: 181 FSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTK 240

Query: 241 ERGFNPSSLMFIYGLCIVSSMSKDKWLSKLHI--SFGWSDEQFQSMFLKQPCFMNRSEEG 300
           E GFNPSS MFIYGLC  S M KDKWLSKLHI  SFGWS EQFQS+FLKQP FMN SEE 
Sbjct: 241 EAGFNPSSPMFIYGLCTFSGMKKDKWLSKLHIFTSFGWSKEQFQSLFLKQPTFMNSSEEK 300

Query: 301 LKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALK 315
           +KRALDF+MNK DWT EEI RYPIVL LSFEKRV+PRSSILQHLMSKG  K+ S G A  
Sbjct: 301 IKRALDFFMNKLDWTHEEISRYPIVLYLSFEKRVVPRSSILQHLMSKGFIKKTSFGRAFM 349

[Close]

BLAST of Chy3G050250 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 86.3 bits (212), Expect = 5.0e-17
Identity = 50/174 (28.74%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 146 LHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPSSL 205
           L   ++ + PNI  +   GV +  I +L    P A+ +    F  I ++ +E GFNP   
Sbjct: 202 LEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKS 261

Query: 206 MFIYGLCIVSSM-SKDKW--LSKLHISFGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFY 265
            F+  +  +S   +K  W    +++  +GWS++     F K P  M  SE  + R ++++
Sbjct: 262 TFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYF 321

Query: 266 MNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKIP 317
           +N+ +     I + P+VL  S EKR++PR S+ + L+S GL K      +L +P
Sbjct: 322 VNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVP 375

[Close]

BLAST of Chy3G050250 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-15
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 152 FVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPSSLMFIYGL 211
           F+ PNI  L   G++ S +A L  ++P   +   E     V +  + GF  +S M ++ +
Sbjct: 180 FLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAV 239

Query: 212 CIVSSMSKDKW--LSKLHISFGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFYMNKWDWT 271
             +SS+S+  +    KL ++ G+S+++   +  + P  +  SE+ L    +FY+ +    
Sbjct: 240 ISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLE 299

Query: 272 REEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGL 304
           RE + + P VL  + EKRV+PR  +LQ L  KGL
Sbjct: 300 REALAKRPCVLSYNLEKRVIPRLKVLQILREKGL 333

[Close]

BLAST of Chy3G050250 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 79.0 bits (193), Expect = 8.1e-15
Identity = 50/185 (27.03%), Postives = 87/185 (47.03%), Query Frame = 0


Query: 140 CSMTRVLHTFSEFVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERG 199
           C   ++ H     V+  + + R  GV D +I  L    P         F +++ +    G
Sbjct: 187 CFSLKITHC----VSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYG 246

Query: 200 FNPSSLMFIYGL----CIVSSMSKDKWLSKLHISFGWSDEQFQSMFLKQPCFMNRSEEGL 259
           F+P    F++ +    C   S  + K+  KL   FGWS E F +  ++ P  +  S+E +
Sbjct: 247 FDPKKAGFVHAMVAFDCTSESAMERKF--KLFQCFGWSKEDFVAAIMRFPNCVTVSDEKI 306

Query: 260 KRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGLTKRKSLGLALKI 319
              L++ +N       +I   P+VL LS EKR+ PR+ ++  L+SKGL K++ +     +
Sbjct: 307 MYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTIL 365

Query: 320 PSRSS 321
             +SS
Sbjct: 367 KLKSS 365

[Close]

BLAST of Chy3G050250 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 65.5 bits (158), Expect = 9.2e-11
Identity = 45/163 (27.61%), Postives = 78/163 (47.85%), Query Frame = 0


Query: 145 VLHTFSE-FVAPNIEVLRANGVLDSNIAILFWKRPVALSRDVEWFTDIVEKTKERGFNPS 204
           V++  SE  +   + V +  G  ++ I  +F K P  L    +    + E  K+ G    
Sbjct: 244 VVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEE 303

Query: 205 SLMFIY---GLCIVSSMSKDKWLSKLHISFGWSDEQFQSMFLKQPCFMNRSEEGLKRALD 264
            ++ +      CI SS  K     ++ +  G+S + F+ M  + PC    S E L++  +
Sbjct: 304 EIISVLKSRPQCIRSSEQKILDSIEMFLGLGFSRDDFKMMVKRYPCCTAYSGETLRKKFE 363

Query: 265 FYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSSILQHLMSKGL 304
             +   +W  E +   P VL  S EKR++PRS++++ LMSKGL
Sbjct: 364 VLVKMMNWPLEAVVMIPTVLGYSLEKRIVPRSNVIKALMSKGL 406

[Close]

BLAST of Chy3G050250 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-10
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 0


Query: 156 NIEVLRANGVLDSNIAILFWKRPVALSRDV-----EWFTDIVEKTKERGFNPSSLMFIYG 215
           N+ VLR  G+      +LF   P+ +S DV     E F + ++K  E GF+PS+  F+  
Sbjct: 192 NLSVLRELGMPHK---LLF---PLLISCDVPVFGKEKFEESLKKVVEMGFDPSTSKFVEA 251

Query: 216 LCIVSSMS----KDK--------------------WLSKL-------------HISFGWS 275
           LC+V  +S    +DK                    W + L              +  G+S
Sbjct: 252 LCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIETFLGLGFS 311

Query: 276 DEQFQSMFLKQPCFMNRSEEGLKRALDFYMNKWDWTREEIYRYPIVLMLSFEKRVMPRSS 304
            ++F  +  + P  +  S E +K+  +F + K +W  + +   P VL  S EKR +PR +
Sbjct: 312 RDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVLGYSLEKRTVPRGN 371

The following BLAST results are available for this feature:

BLAST of Chy3G050250 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G050250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN0	2.2e-92	57.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402010 PE=3 SV=1	[more]
A0A0A0LK19	1.5e-80	52.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G346010 PE=3 SV=1	[more]
A0A5A7UKN0	2.5e-72	50.57	Transcription termination factor MTERF8 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BCI2	2.5e-72	50.57	transcription termination factor MTERF8, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5A7V906	6.8e-70	48.06	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Chy3G050250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138819.1	1.11e-115	58.31	uncharacterized protein LOC101219073 [Cucumis sativus] >KGN63092.1 hypothetical ...	[more]
XP_004143080.2	5.59e-100	52.32	uncharacterized protein LOC101214641 [Cucumis sativus] >KGN62260.1 hypothetical ...	[more]
XP_008444984.1	2.19e-89	50.57	PREDICTED: transcription termination factor MTERF8, chloroplastic-like [Cucumis ...	[more]
XP_008445328.1	1.20e-86	48.36	PREDICTED: transcription termination factor MTERF5, chloroplastic-like [Cucumis ...	[more]
XP_022951074.1	9.87e-82	49.03	uncharacterized protein LOC111454032 [Cucurbita moschata] >XP_022951075.1 unchar...	[more]

BLAST of Chy3G050250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	5.0e-17	28.74	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	2.8e-15	29.87	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	8.1e-15	27.03	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	9.2e-11	27.61	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	4.6e-10	27.89	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 270..304 e-value: 2.4 score: 17.2 coord: 238..269 e-value: 130.0 score: 10.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 153..314 e-value: 3.1E-16 score: 59.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 139..316
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 140..320 e-value: 4.1E-27 score: 96.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..121
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 139..316

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G050250.1	Chy3G050250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding