CcUC05G094690 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G094690
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranscription elongation factor SPT4 homolog
LocationCicolChr05: 15450281 .. 15457037 (+)
RNA-Seq ExpressionCcUC05G094690
SyntenyCcUC05G094690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATACGACTATTCTTTTGAAGAAGAAAGACAAAGTTAGGCGTATTTTTTTCTTGGACTAAATTGTTAGAGCTAGAAGGCCAAAATTGGTTTTCAAACATTTTATTTTGAAGCCCGACTTTCTATTTCTTCTTCTTTCTCCCTTGGTTAGTACTACTATTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCACTGACGCCGCCCGCCAGTCATTACTGCCGTCGACCCGCTGCCGTGCCTCCGCCACCGACGACCATACATCCAAGTAACTTCTTCATTTATAAAAACTTCTCTCTCTCTCTCTCTCTCTTCCCCCTCCTAAAATGAGGGAATCTCAACCGACAATACATCGAATTACTAATGTTGTCAGAGTAATCGGCAGAAGGATCGAGTAGGTGATTGGAAACTAGCAGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTTTAGTCTCCTATTTTCAAGAAGCTTTGGTTGTCCTTGTGAATGCTTGCGTTCAATCTCTAATTGGTCATGCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGTTTGTATAATATTCTTCTCCTGTATTCTTTTTTTGTGTTACTGTTTGTCATTTTGTTCTAACTAGTTTGCTTCCATCGTGCCTTGGATAGAAGTTTGGACATGACGTATAATTTCAGTTATGCAATGAAAATCTACAAAATTTCTACAGGAAACCTAAAAATATTCAATCAATATTAAAAGAAGTAATGTTCAGCTTATGATCATACTGTATTTCAGTTACATTTGTTGTACCCTTTTGCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCTCTTTCTTCTTTCTTACCCCCCTCCCATTATTGTTTTGTAACTAAACATGTTGCTTTTGACAAAGAATTGACTAACCTTAGTACTCGTTATTCAATTAGCAGTTAATATCTTCCTCTCAGACTTATTAATTTCTGTGGCGAAGTTTCAACTTTCAAGAACATTCGTAATTTCGTAGATAGAACAAAAGAAAGGGTGTCATTTTCATTTTTCAACATAGAAATCTGTCCATTTATTCCGAGCCTAACATTAGGACAGTTGAACAATTTTTCATTTTAAGCTGGTCCTATGCACTTGCTGATATCCTTTGAATTAAATGGTAACAAAATGCCATGTGGCTGCTGAACGCCTGAAAACTGACCAATATCTTGAATTTTTGATAATGAATTGCATGCGCTATAGTGTTTAGTTTACTTATATGTATGGTCGAATGAAAAATTTAGCAATTTGGAGCAATGGCTTTTATTTTTATTATAAGATCAACGTTGATACAATTGTTGAGTAATACCTGGAATTGATTAAACCGACAATTTCTTCTTCTTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACCTCTTGTTTGAAATTTATTGTATTAGGTACCTTTCATTTCACCTAATTTTAATCATTCATTAAATTTCTTGCTTGTAACCTTTTAGTTTTGTGTGTAATTTGTTTGCTCTATAGTAGCGTTTGGCATTTCAAATTTATATTTCCTGCCAATCTTGCAGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTTTGCAACCAATCATTACGTAGCATAAATTTCACCATGACACATTTACATGTTTCATTCTTCTGTGTTCATCATGTACCAAAGCCATCAGGAATATCCATGCCCATTGGTTGATTGTTTCTGGTTAGGGATTTTTCTTTTGATTTACTATTCTTATTTAATTCTCTCTCCCTCTCCCTTTCTCTATTGTTGTTCTTTTTCTTTGATTCTTTCTGTTGTTTGCTGTGACCTAATAATAAATTCAGTGGCTCCTCTTGCCTGTAACTTCAGAAACTAAACATCAGGATTGGGAAATTGGTGCATGTGGAATTGGAGGACATCTGGTCCCTTGGGTTGGGAACAACCCCTTGGACTTTCCATTTAAATCAGTATAGTTAGCTTAATTTTACAAGTTGGGGAGGATTCGGTTATCCTTGTATATACTTTTATTTCTCTTGATGATAGTTTAGTTTCTAACAAAGAAAAACAAAAACAAAACAAACGATTTTTCACTTCAACTGCTCCATGATCGAATTGGACTACTGTAAAAAAGGACCCAACCACATAGATTTCAATTTTCATGGGCATAATTTGAGGCATGAATTATTGAGCAACACCTATTGACCCGAACAAAGTTTATATTCTAATGTACTTGTGTTAGGAACCGAGGTAGTATGGGCTACCCTTGTCCCACATTGGTTAGAATGGGATGACCAATGTGGGACAAAGGTAACCCATACTATTGAGGTGGAGAACCACACCTCGAAAGCTAGCTATTGAGGTGGGAGAGTCCCATTCTAACCAATGTGGGACAAAGGTAGCCCATAGTACCTTGGTTCCTAACAACTTGTTGTGCCATGCCTTGGTTCTCTTCTTCTTATGAATTCAAGCATTCTCATATGCCTCATTTCATTATTTATTCATCTTCAACGGTTACAATCTCTTCTCATCGACTAGTTTTAAATCCATATTCAACAATTTCATTGTTCAATATGCCTTATGTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACATGTAAGGAGATATCACATGAGGAGTTCTGAATGCGGTCCTACATGCCTACAGACTACAATGCAACATTTAATTTCTTTGTCCAATCTTTGAGTGAATGGTGCATTTCTTCTTAAGGATACCCTTCACCACTCTGTTGCTAAATTCCATCTGTTCATTTGTGTGAGGGTGATAAGCTAAAGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGCTGCAAATTCCTGCTTGTTGGAGTGCAATCCTCCACTTATGATTGCTCATGGCATCCCAAATCTGGTAAAAATATTATTTTGAGAAAATTTAGGACTACCTTTCTTTCTTTTGTTGTAGTAGTAATTGCCTTCACCCATGCTGACACATGATCAATAGCAAAATGTTCTTATTGTTGTATGAAGATGGCACGGCTCCATGAAATTCATTCCCCACCCATCAAATAGTTTCACTTCAAAATGTTTTGCAAGAACATTTCATCCTAGAGATATTCCTTGTTCATTGACATTTGTCACGTGCTGGTAAAAAAGAAACTCCAAATACCAAGAAATCATCCTTAAATAACTTGATGCATTTTTGACCATGTCTAAAAAGATCACCATTGTGCACCTTGGTAATCTGATGGATGCCAAGCGTAGATTGAAGGGCATTCTACTAAATGCAAAAATGCCATATGGGACGTGGACGTAGTCTCCTCTTGATACTTCATTGCAATTTCAATTTGATGATATTGATAGGAATGCTATTAGAGTGTTTAAGGCATATTAGTAATTAGCTAGAGGAGTTTGTTATGGAGTTTGGTTATGAATAAAGGCTAGGGGAATGAGGAAGGTAGGGTGAAATAGGCTTGAGAGTGATCTCAAAAGGACACGGTCCAAGTACCTTGATTATAGATTTTACTCACATGGTAATTTATCTTATAAAAACTTGTCTAATTCGATTGATTTAAAGAGGATAAAAAAAGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAATTTTGTCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGGTGAGGTACTCCTTTTGTTCCATAGATGATTTTTCTTACCAAGAAGAGCCTCCAGATGAAGTTGAGCATTTATGATCTCTTCAGTCCATAGTGAGTTCTAACATGGTGAAACTAACATGGTGAAACCAACGTTCATGAAAGCTTTCCCTCTACATTACCCTCGAAAGAAAGAAGTTTCTAGTGTTCTTGATTATGAAGAGAACATTTTGATGCTTTAGAAGAATCTTGAACTCATCTTTTGATTTCTTCACTAGTCGCTTCAAAATAGCACAAGTCTTTGGATCGACAAGCTCTTTAAGCAATCTTTTATCATGCTCCCTGGATCAGATGTTCAGTTTATTAAAGGAGCATCCAATCCCCTTCTCCTAAAGAAGTTTTATCTTCTTATGATGATGGTGACGAATCAATTGTAAGTGTGAGCAGTGAAGAGGTAGAATTTCCTATGGAGGAATCAATGCAACAAGTTATTATCAGAGGATATATTTGCAGAAATCTATAATCATGTTTTTGCAAGCGAAGACATTGGATCACTTAGTTCAAAGCCTTTTGTTTCAGCATCACCAATGTCTTTTCCTTCGATTCCTGAGAAATTCACTTTTTTGTTAAGGTTTGTGATCTTCAACTGCAGGCAATTCCTTCTAGATGAGTTATAGCTCAATGGTGTTCACCTTGTTTGTTTAAAGCTATCAACACTTTTTTGGATTGTTCAAGGTTTTTTGGTCTTTCGCTGGGCAATCTTGTCAGTTTTTTGGTTTGACGTTTCTCTTTGTTTGGTTTGGTTTATTTTGGTTCGGTTTGTCTCTTAGATTCTTATGGGGGCTCTCTCTCTAAGTTTTTTGTGCTTCTTAGTTGAAGGTTTTTCGTCTTATTTGGCTTGTATTCTTCATCAATTTGTTTGCCTCTTATTTTGTCTTCTAATTGGACGTCTTGTATTTTGGAGCATTAGTCTCTTTTCATTTTATCAATAAAAATTCGGTTTCCTTTTTAAAAAAAGGAAAAAAAAAAAACAGATATCTTGAGTAACCATCCGGAATATGTCGTCCTAATCTGTCTAACCTTTGGTCAATAGAGGGCAAGGGTTGCCTTGTCTAACTACTTGTAATGTATGCAGCTTCTCCGACCAATGATTGTTCTTACCGGGATAAACTCTTTATTCTCATTCTCTACCACTGTTGTTCCTCCTTTCTTTGTTACCACATGTACTAGATCCACCCATCTCCAAACTTCACCCCGAACCTCTTTTATTTTCTGGTTGAGCCTCCTTTGCACTTCTATTAAGGCGTAATCCCCTCTTCTAATAAAATTTTGTGCATACACAATGAAGGGCTCATACCTTTTGTACTTGCCAAAGACCATCAGATTGCCTGTTTATGTTTCCTAATTGCACGCAACAACCATCTTTACTCTTGAATAGGCAACTCTACTGAGATGATTGCTGAATGAGTGCTCTTCTTCACTCAAGTATATACATCTCATATGAGATGGTAGCACCTTTTTGGATTTTATGGGTTCTGTTAGTGTCCAAAATTATTGATGATGTAGCTGGGTATAACAAAGTGGGAGTAGCTTTTACAAGTCCTGCATCCTGAAGGGCTGGGAGGAATTTTTTTTGAAGCCCACTAATAATATTCAAAATCTAGCTTTGAAATGCCTGAACATGAATTTTTGGGTGTCGCATTCAGTATGTTGAAATGCATACATTAGCTGTTTTAGCCCTGTAGTTGAACATAACTTTCTAAGGTTGTAATTCTTATATGTTCTTCATCCTTTTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAACTGTATGTTATATCTAGTTTATCCTGATTACAAAGAATTCCACCTTGTTCATGTAGTAGCACTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTTATTCGATTGAAATGAACAGAAGGTATAGTCGCTAACACCTTGCATTGCACATCTTTATTTGCTTCCCCCTGCGTTTCTTTATTGCCTATTAAAATACTCACCCACGGTTTGAAGAGGTTGAATTTGAGTGGCTGAGAACACAGGTTTAACCAAGCACTGTTAGTTTATTGCTCCAAGGAGAAAGCATGTTGGCATGCGAAAAAGAGGTAGATTTAATACAGATGCATATCGTTTGTGCTTAATTGACGAGAATAAAGAAAAAACGTTAATATATTTTCGCAGAATCAGTTGAGTCACTAACGAAGGAAAAAGAAAACATCTTGTTACTTGAGCAAAGACAATGTTAGTCCATCATATGGGAAAGATCTTGTGGTAGGCTTATTGTTCATCCATCATATGGGAAGAAAAGTTACAAAGGAAAAATAAAACATCTTGTTACTTGAGAAAACATCTTTTTTCTTTCGTACGCTCGTGTATGTTCTTTCATCTTTCTCACTGAAATTTTGGTTACCTGAAAAAAATGTTTTTCCTTGCATTCTCTCTCTCTTGTTGGTTGAGTTCGTAGAATTTACTGCCAAATCTAGGAGAGAACTCTAGAGAATGTACCATGGTGTGTCTTGTTTGTTGTGTAATTTCATTGTTATTTATTAGGTATAGTAGGATAATCGAGTTTGGATGGCTCTTAGCCTAAATGGTCAATTAATTTTTCGTAGTAAAAGAGCTTCGAGCTCCAATCCTACAAACTAGTCATTAGTTCTTATTACTCTTCTATGCCTTTTTTTTTTTATTACCAGCTAATTTCATATGCTTTGCAATGTGCCAAGCGGATGTTTGGTTTATGAGAAGGCTTGGG

mRNA sequence

GTATACGACTATTCTTTTGAAGAAGAAAGACAAAGTTAGGCGTATTTTTTTCTTGGACTAAATTGTTAGAGCTAGAAGGCCAAAATTGGTTTTCAAACATTTTATTTTGAAGCCCGACTTTCTATTTCTTCTTCTTTCTCCCTTGGTTAGTACTACTATTCGTTCCCTAGTTTTCTTTTCTGCCGATGCTGTGCACACCGGCTCACTGACGCCGCCCGCCAGTCATTACTGCCGTCGACCCGCTGCCGTGCCTCCGCCACCGACGACCATACATCCAAAGTAATCGGCAGAAGGATCGAGTAGGTGATTGGAAACTAGCAGGGAGGGATCGGAAGTAATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAATTTTGTCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAACTGTATGTTATATCTAGTTTATCCTGATTACAAAGAATTCCACCTTGTTCATGTAGTAGCACTTTTAGTTGAACTAGCATTTAGTGTGTGTTGTTATTCGATTGAAATGAACAGAAGGTATAGTCGCTAACACCTTGCATTGCACATCTTTATTTGCTTCCCCCTGCGTTTCTTTATTGCCTATTAAAATACTCACCCACGGTTTGAAGAGGTTGAATTTGAGTGGCTGAGAACACAGGTTTAACCAAGCACTGTTAGTTTATTGCTCCAAGGAGAAAGCATGTTGGCATGCGAAAAAGAGAATCAGTTGAGTCACTAACGAAGGAAAAAGAAAACATCTTGTTACTTGAGCAAAGACAATGTTAGTCCATCATATGGGAAAGATCTTGTGGTAGGCTTATTGTTCATCCATCATATGGGAAGAAAAGTTACAAAGGAAAAATAAAACATCTTGTTACTTGAGAAAACATCTTTTTTCTTTCGTACGCTCGTGTATGTTCTTTCATCTTTCTCACTGAAATTTTGGTTACCTGAAAAAAATGTTTTTCCTTGCATTCTCTCTCTCTTGTTGGTTGAGTTCGTAGAATTTACTGCCAAATCTAGGAGAGAACTCTAGAGAATGTACCATGGTGTGTCTTGTTTGTTGTGTAATTTCATTGTTATTTATTAGGTATAGTAGGATAATCGAGTTTGGATGGCTCTTAGCCTAAATGGTCAATTAATTTTTCGTAGTAAAAGAGCTTCGAGCTCCAATCCTACAAACTAGTCATTAGTTCTTATTACTCTTCTATGCCTTTTTTTTTTTATTACCAGCTAATTTCATATGCTTTGCAATGTGCCAAGCGGATGTTTGGTTTATGAGAAGGCTTGGG

Coding sequence (CDS)

ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTTGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGGTTCGTTCCAGGTTGTTACACTCTTGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGGTAATGGAAGATGAAGCTTTTATTTTGTCAAATGATGGCAAGTCGAGTGAAGTAGAATTTTGTCCAAAGGTTCTTTTAGAGCTTGATCGGCCCCTTACTTTGAATGACTTAGATGACTATGGTCCTAAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAA

Protein sequence

MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEFCPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV
Homology
[Close]
BLAST of CcUC05G094690 vs. NCBI nr
Match: XP_038881174.1 (transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881192.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida])

HSP 1 Score: 232.3 bits (591), Expect = 3.0e-57
Identity = 116/159 (72.96%), Postives = 116/159 (72.96%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  NLCEEERVQYAPPKRV
Sbjct: 121 -----------------------NLCEEERVQYAPPKRV 116

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BLAST of CcUC05G094690 vs. NCBI nr
Match: XP_008461561.1 (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461562.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461563.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_011651356.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651357.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651358.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_031739203.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >KGN57714.1 hypothetical protein Csa_010059 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-57
Identity = 115/159 (72.33%), Postives = 115/159 (72.33%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  NLCEEERVQYAPPKRV
Sbjct: 121 -----------------------NLCEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. NCBI nr
Match: XP_022143259.1 (transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143260.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143261.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 114/159 (71.70%), Postives = 114/159 (71.70%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  NLCEEERVQYAPPKRV
Sbjct: 121 -----------------------NLCEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. NCBI nr
Match: XP_022948256.1 (transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948257.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948258.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022998096.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998097.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998098.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_023523239.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023523240.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >KAG6607059.1 Transcription elongation factor SPT4-like 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036760.1 Transcription elongation factor SPT4-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-56
Identity = 113/159 (71.07%), Postives = 114/159 (71.70%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  N+CEEERVQYAPPKRV
Sbjct: 121 -----------------------NICEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. NCBI nr
Match: KAA3463613.1 (transcription elongation factor SPT4-like protein 1-like isoform X1 [Gossypium australe])

HSP 1 Score: 227.3 bits (578), Expect = 9.6e-56
Identity = 113/161 (70.19%), Postives = 121/161 (75.16%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDED+ERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDNERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMED--EAFILSNDGKSSEV 120
           GIISVMDP+RSWAARWLRIGRFVPGCYTLAVSEALPEDLQV        IL N G   + 
Sbjct: 61  GIISVMDPSRSWAARWLRIGRFVPGCYTLAVSEALPEDLQVRVKFINQHILFNKGNMEDG 120

Query: 121 EFCPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
            +  +                +G  NLCEE  VQY PPKR+
Sbjct: 121 RYGTR----------------FG-HNLCEEVHVQYVPPKRI 144

[Close]
BLAST of CcUC05G094690 vs. ExPASy Swiss-Prot
Match: Q94C60 (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g63670 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-51
Identity = 98/159 (61.64%), Postives = 109/159 (68.55%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q                    
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  +LC+EERVQY  PKR+
Sbjct: 121 -----------------------HLCQEERVQYVLPKRM 116

[Close]
BLAST of CcUC05G094690 vs. ExPASy Swiss-Prot
Match: Q8LCQ3 (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 198.4 bits (503), Expect = 6.3e-50
Identity = 93/159 (58.49%), Postives = 107/159 (67.30%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q                    
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQF------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                   +C++ RVQY PPKR+
Sbjct: 121 ------------------------ICQQARVQYVPPKRI 116

[Close]
BLAST of CcUC05G094690 vs. ExPASy Swiss-Prot
Match: Q6DGQ0 (Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-19
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of CcUC05G094690 vs. ExPASy Swiss-Prot
Match: Q5RFH5 (Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.5e-19
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDL 100
            P  SW ++W R+  F PG Y ++V+  LP+ +
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGI 97

[Close]
BLAST of CcUC05G094690 vs. ExPASy Swiss-Prot
Match: P63271 (Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.8e-19
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDL 100
            P  SW ++W R+  F PG Y ++V+  LP+ +
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGI 97

[Close]
BLAST of CcUC05G094690 vs. ExPASy TrEMBL
Match: A0A1S3CFH1 (Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC103500131 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.2e-57
Identity = 115/159 (72.33%), Postives = 115/159 (72.33%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  NLCEEERVQYAPPKRV
Sbjct: 121 -----------------------NLCEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. ExPASy TrEMBL
Match: A0A0A0L9Q3 (Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.2e-57
Identity = 115/159 (72.33%), Postives = 115/159 (72.33%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  NLCEEERVQYAPPKRV
Sbjct: 121 -----------------------NLCEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. ExPASy TrEMBL
Match: A0A6J1CNB4 (Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=LOC111013173 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 114/159 (71.70%), Postives = 114/159 (71.70%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  NLCEEERVQYAPPKRV
Sbjct: 121 -----------------------NLCEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. ExPASy TrEMBL
Match: A0A6J1K6X8 (Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492846 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.1e-56
Identity = 113/159 (71.07%), Postives = 114/159 (71.70%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  N+CEEERVQYAPPKRV
Sbjct: 121 -----------------------NICEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. ExPASy TrEMBL
Match: A0A6J1G8V8 (Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451985 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.1e-56
Identity = 113/159 (71.07%), Postives = 114/159 (71.70%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ                    
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  N+CEEERVQYAPPKRV
Sbjct: 121 -----------------------NICEEERVQYAPPKRV 116

[Close]
BLAST of CcUC05G094690 vs. TAIR 10
Match: AT5G63670.1 (SPT4 homolog 2 )

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-52
Identity = 98/159 (61.64%), Postives = 109/159 (68.55%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q                    
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQ-------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                  +LC+EERVQY  PKR+
Sbjct: 121 -----------------------HLCQEERVQYVLPKRM 116

[Close]
BLAST of CcUC05G094690 vs. TAIR 10
Match: AT5G08565.1 (Transcription initiation Spt4-like protein )

HSP 1 Score: 198.4 bits (503), Expect = 4.5e-51
Identity = 93/159 (58.49%), Postives = 107/159 (67.30%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q                    
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQF------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                   +C++ RVQY PPKR+
Sbjct: 121 ------------------------ICQQARVQYVPPKRI 116

[Close]
BLAST of CcUC05G094690 vs. TAIR 10
Match: AT5G63670.2 (SPT4 homolog 2 )

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-40
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
          M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1  MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61 GIISVMDPARSWAARWLRI 80
          GIISVMDP+RSWAARWLRI
Sbjct: 61 GIISVMDPSRSWAARWLRI 79

[Close]
BLAST of CcUC05G094690 vs. TAIR 10
Match: AT5G08565.2 (Transcription initiation Spt4-like protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 79/159 (49.69%), Postives = 93/159 (58.49%), Query Frame = 0 

Query: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQVMEDEAFILSNDGKSSEVEF 120
           G +S            L  G+F PGCYTLAVSEALPE++Q                    
Sbjct: 61  GFVSDRREINLTHCNILFPGKFAPGCYTLAVSEALPEEMQF------------------- 116

Query: 121 CPKVLLELDRPLTLNDLDDYGPKNLCEEERVQYAPPKRV 160
                                   +C++ RVQY PPKR+
Sbjct: 121 ------------------------ICQQARVQYVPPKRI 116

The following BLAST results are available for this feature:
BLAST of CcUC05G094690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881174.13.0e-5772.96transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183... [more]
XP_008461561.18.7e-5772.33PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008... [more]
XP_022143259.12.5e-5671.70transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_0221432... [more]
XP_022948256.14.3e-5671.07transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_02294825... [more]
KAA3463613.19.6e-5670.19transcription elongation factor SPT4-like protein 1-like isoform X1 [Gossypium a... [more]
BLAST of CcUC05G094690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C601.9e-5161.64Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 G... [more]
Q8LCQ36.3e-5058.49Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q6DGQ01.2e-1948.89Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1[more]
Q5RFH57.5e-1944.09Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=... [more]
P632719.8e-1944.09Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2... [more]
BLAST of CcUC05G094690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CFH14.2e-5772.33Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A0A0L9Q34.2e-5772.33Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
A0A6J1CNB41.2e-5671.70Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1K6X82.1e-5671.07Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1G8V82.1e-5671.07Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LO... [more]
BLAST of CcUC05G094690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63670.11.4e-5261.64SPT4 homolog 2 [more]
AT5G08565.14.5e-5158.49Transcription initiation Spt4-like protein [more]
AT5G63670.22.1e-4089.87SPT4 homolog 2 [more]
AT5G08565.21.3e-3949.69Transcription initiation Spt4-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
e-value: 2.9E-42
score: 156.4
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
e-value: 2.3E-32
score: 110.9
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 14..105
e-value: 1.76909E-47
score: 147.385
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 2..105
e-value: 1.2E-39
score: 136.4
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..105
NoneNo IPR availablePANTHERPTHR12882:SF4TRANSCRIPTION ELONGATION FACTOR SPT4 HOMOLOG 2coord: 1..105
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G094690.1CcUC05G094690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006397 mRNA processing
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0034243 regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0032044 DSIF complex
cellular_component GO:0005634 nucleus
molecular_function GO:0000993 RNA polymerase II complex binding
molecular_function GO:0008270 zinc ion binding