Carg16684 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16684
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein cornichon homolog 4-like
Location	Carg_Chr15: 8345363 .. 8347628 (+)
RNA-Seq Expression	Carg16684
Synteny	Carg16684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAATCGCCTCTACGACAAGGAAGCAGTTGAAAAAAAGGTGTTGTCGGGGACCTCCGGTCGCCTTGAGAAATTTAGATCATCCAGAAGCGATCAATCCTTTGCGCGTCGGGATTAGACTCCGGCGAGGTTCACTGTGCACGGTTTTCTTTTATAATTCCTTCACCGCCTCCTTCAATCCATTTCCGCTTCCGCAGGCGCATGTGGGCCGGTGACGATGTGGCGGCGTTGAGGTTGATTTCAAATCGGACACGCAGGGAGAGCAACGAGATACGGGCAGTTGGTTGAGGGTATTAATATGGCGGATATCTACGTCTGGCTCCTCTCCTTCTTCATTATCATTGCGCTTCTTATACTCGTCGTTTTCCAGGTTCTCTCTAAACCCTAAAATTTCTGTCTCTTTTTCTTGATTTGTTATTCGAAGCTCTGTTTGTTTAATTCTCAGTCTACAGACTTACCTGAATATTCTTATGTCATGCTTTCAGATTGATTTTTGATTTGAAGGCCCTTTGATTTCTAGATATAAACACTAGCTACACTTTTTTTTGGATTCTTACATGTGTTCATTGGGCTAGTTCTATAGAATTGATATCGTAATTCCCTACATATGAATAATTGACATACAGTATTGTTAATTGCCTAAAACAAGGTTGGAACTGAGGAACTTATGATGCTTTTGAAACTTGCTGCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAACCCATATGACTCCTCATCACGGATAAACAAAGTCGTTATGCCTGAGTTCATCACTCAAGGAGTCTTGTGCATCTTCTATCTCTTAACAGGGCATTGGATTATGTCATTGTTTTGTGTTCCTTACCTTTATTATAATATAAGATTGTAAGTTTCTCTAATTCTTACATCTTTGATCTGACTTTTTACTGTACTAGAGATATGGTTGCATAATTTTTAGTGGGGTATATGCTTTATATCGATTGCCAATTTTACCTATCAGAACCTCATTTATCATTCTGGGCTTTGAATTCAGTGTTTGAAAGAGAGGGCCTATCATGTTTTATAAAACAATACTAATGAGAGAGAGAGCTTATCATGCCTGGTAAACACTCGGTGGCCAAGTGCTGAGTGGATAGCTGGGGAAAGCATACAAGTAGTGAACTTGTAACCTTTTTTTGTTTGAATGTATGTTGTGTTAAAGCACCAACAGTCTCTTCTGAGATTTAGATTAATAACATTAGTTTTCAGATAAGTTTACGTGTTGGGATCTCATGGCTAGTCTCCTATTTACATTGTGAGATCCCCACATTGGTTGGAGAGGAAAACGAAGCATTTTTTTTAGAGTGTGGAAACCTCTCCTAACAGACGCATTTTAAAAACCTTGAGAGGAAGCCCGAAAGGAAAAGCCCAAAGAGGATAGTATCTGCTAGCGGTGGGCTTTGGCCGTTACAAATAGTATCAGAGTCAGACACCAGGCGATATGCCAACGCAAAAGGGGGTGGATTGGGGGGTCCCACATTGATTAAAGAAGGGAACGAGTGTCAACAAGGACGCTGGACTCCAAAGTGGGGTAGATTGTGAGATCCCACATCAGTTGAGAAAGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACATCTCTTAAAAACCTTGAAAGAATAATATTTGTTAGTGGTAGGTTTGGGCCGTTACAAATATGTAGTATGACTGGAACTAATTTACAGTGGATATCAAACTAACATATTTGAGATTGGGTTCTCGAGTTTTCCGTTGCTGGTAATTCATGCCAAGCTTGTTGATCTGTCTAATGTGTGGTGTCCTCATGATCAGGTACACTCAGCGGAAGCACCTGGTAGATGTTACTGAGATATTTAACCAGTTACCTTGGGAAAAAAAGCAAAGACTTTTCAAACTCGTCTATCTTGTTTCTCTCATCTTCCTCTCCATATTTTGGTAATCCAATTGGAGAGATCGTTTTCTTATTTTGAATCCTAGTTTTTAACATCATTAACATCTTCTTGTTTCTCTGCTTTGCAGGTTAATTTACAGTGCATTGGAGGATCATGAGTCTTGAATAGATCATGCAAAGTGTTGTCTTGTAAGAGATAAAGCCACTGTGCGGCTCACTACAAAGCTTGGTGTACTTACTCCCTAGGGTATCTTCTTGTGTTGTAATTCTAAAGCTTTTTTCTTCATTTCTTTTCATTCCTACTATATACTGGTATTTTTCTCTGCTGGCTATAAATGAAAATTTTTAAGATCT

mRNA sequence

AGGAATCGCCTCTACGACAAGGAAGCAGTTGAAAAAAAGGTGTTGTCGGGGACCTCCGGTCGCCTTGAGAAATTTAGATCATCCAGAAGCGATCAATCCTTTGCGCGTCGGGATTAGACTCCGGCGAGGTTCACTGTGCACGGTTTTCTTTTATAATTCCTTCACCGCCTCCTTCAATCCATTTCCGCTTCCGCAGGCGCATGTGGGCCGGTGACGATGTGGCGGCGTTGAGGTTGATTTCAAATCGGACACGCAGGGAGAGCAACGAGATACGGGCAGTTGGTTGAGGGTATTAATATGGCGGATATCTACGTCTGGCTCCTCTCCTTCTTCATTATCATTGCGCTTCTTATACTCGTCGTTTTCCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAACCCATATGACTCCTCATCACGGATAAACAAAGTCGTTATGCCTGAGTTCATCACTCAAGGAGTCTTGTGCATCTTCTATCTCTTAACAGGGCATTGGATTATGTCATTGTTTTGTGTTCCTTACCTTTATTATAATATAAGATTGTACACTCAGCGGAAGCACCTGGTAGATGTTACTGAGATATTTAACCAGTTACCTTGGGAAAAAAAGCAAAGACTTTTCAAACTCGTCTATCTTGTTTCTCTCATCTTCCTCTCCATATTTTGGTTAATTTACAGTGCATTGGAGGATCATGAGTCTTGAATAGATCATGCAAAGTGTTGTCTTGTAAGAGATAAAGCCACTGTGCGGCTCACTACAAAGCTTGGTGTACTTACTCCCTAGGGTATCTTCTTGTGTTGTAATTCTAAAGCTTTTTTCTTCATTTCTTTTCATTCCTACTATATACTGGTATTTTTCTCTGCTGGCTATAAATGAAAATTTTTAAGATCT

Coding sequence (CDS)

ATGGCGGATATCTACGTCTGGCTCCTCTCCTTCTTCATTATCATTGCGCTTCTTATACTCGTCGTTTTCCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAACCCATATGACTCCTCATCACGGATAAACAAAGTCGTTATGCCTGAGTTCATCACTCAAGGAGTCTTGTGCATCTTCTATCTCTTAACAGGGCATTGGATTATGTCATTGTTTTGTGTTCCTTACCTTTATTATAATATAAGATTGTACACTCAGCGGAAGCACCTGGTAGATGTTACTGAGATATTTAACCAGTTACCTTGGGAAAAAAAGCAAAGACTTTTCAAACTCGTCTATCTTGTTTCTCTCATCTTCCTCTCCATATTTTGGTTAATTTACAGTGCATTGGAGGATCATGAGTCTTGA

Protein sequence

MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLCIFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLIFLSIFWLIYSALEDHES

Homology

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BLAST of Carg16684 vs. NCBI nr
Match: XP_022922295.1 (protein cornichon homolog 4-like [Cucurbita moschata] >XP_023551139.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >KAG6579448.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016921.1 Protein cornichon-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC
Sbjct: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI
Sbjct: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]

BLAST of Carg16684 vs. NCBI nr
Match: XP_022969840.1 (protein cornichon homolog 4-like [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVLPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
            FYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQL WEKKQRLFKLVYLVSLI
Sbjct: 61  FFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLAWEKKQRLFKLVYLVSLI 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]

BLAST of Carg16684 vs. NCBI nr
Match: XP_038907022.1 (protein cornichon homolog 4-like [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 6.8e-66
Identity = 129/137 (94.16%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFF IIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLVLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLL+GHWIMSLFC+PYLYYN+RLYTQRKHLVDVTEIFNQLPWEKKQRLFKL+YLVSL+
Sbjct: 61  IFYLLSGHWIMSLFCIPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLIYLVSLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]

BLAST of Carg16684 vs. NCBI nr
Match: XP_023532889.1 (protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >KAG6606147.1 Protein cornichon-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFF IIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLLTGHWIMS FCVPYLYYN+RLYTQRKHLVDVTEIFNQLPWEKK+RLFKLVYL+SL+
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]

BLAST of Carg16684 vs. NCBI nr
Match: XP_022996131.1 (protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein cornichon homolog 4-like [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 5.7e-65
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFF IIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLLTGHWIMS FC+PYLYYN+RLYTQRKHLVDVTEIFNQLPWEKK+RLFKLVYL+SL+
Sbjct: 61  IFYLLTGHWIMSFFCLPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]

BLAST of Carg16684 vs. ExPASy Swiss-Prot
Match: Q84W04 (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.2e-53
Identity = 98/136 (72.06%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           M DI+ WL+SFF +IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVLC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           +FYLLTGHW M+L C+PYLYYN  LY++R+HLVDVTEIFN L WEKK+RLFKL Y+V  +
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSIFWLIYSALEDHE 137
           FL+IFW+IYSAL+D+E
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]

BLAST of Carg16684 vs. ExPASy Swiss-Prot
Match: Q8GWT5 (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-48
Identity = 90/136 (66.18%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           M +++ W++SF I+I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG LC
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           +FYL+TGHW M+L CVPYLYYN  LY++++HL+DVTEIFN L WEKK+RLFKL Y++  +
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSIFWLIYSALEDHE 137
           FL+IFWLIYS L+D+E
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]

BLAST of Carg16684 vs. ExPASy Swiss-Prot
Match: Q3EDD7 (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 189.9 bits (481), Expect = 1.9e-47
Identity = 86/115 (74.78%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 22  VFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLCIFYLLTGHWIMSLFCVPYLYY 81
           +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVLC+FYLLTGHW M+L C+PYLYY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLIFLSIFWLIYSALEDHE 137
           N  LY++R+HLVDVTEIFN L WEKK+RLFKL Y+V  +FL+IFW+IYSAL+D+E
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

[Close]

BLAST of Carg16684 vs. ExPASy Swiss-Prot
Match: Q9SZ74 (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38
Identity = 73/134 (54.48%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           M D+  W++SF  +  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+LC
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           ++Y+LTGHW M++  +P+L+YNIRLY +R+HL DVTE++N   WE+K+R++K+ ++   I
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSIFWLIYSALED 135
           F++ +WLI+SAL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]

BLAST of Carg16684 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 63/138 (45.65%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 3   DIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLCIF 62
           D+++W++SFF+ +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG LC+ 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLIFL 122
           +LLT HW+  L  VP   Y+  LY +R++L+DVTE+F  + +EKK R  KL + V L  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SIFWL----IYSALEDHE 137
            +F L    +YS  ED +
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

[Close]

BLAST of Carg16684 vs. ExPASy TrEMBL
Match: A0A6J1E8A9 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430316 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC
Sbjct: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI
Sbjct: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]

BLAST of Carg16684 vs. ExPASy TrEMBL
Match: A0A6J1I130 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111468923 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVLPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
            FYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQL WEKKQRLFKLVYLVSLI
Sbjct: 61  FFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLAWEKKQRLFKLVYLVSLI 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]

BLAST of Carg16684 vs. ExPASy TrEMBL
Match: A0A6J1K131 (protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491445 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.8e-65
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFF IIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLLTGHWIMS FC+PYLYYN+RLYTQRKHLVDVTEIFNQLPWEKK+RLFKLVYL+SL+
Sbjct: 61  IFYLLTGHWIMSFFCLPYLYYNLRLYTQRKHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]

BLAST of Carg16684 vs. ExPASy TrEMBL
Match: A0A6J1H2W0 (protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459200 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFF IIALLILVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVIPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLLTGHWIMS FCVPYLYYN+RLYTQR+HLVDVTEIFNQLPWEKK+RLFKLVYL+SL+
Sbjct: 61  IFYLLTGHWIMSFFCVPYLYYNLRLYTQREHLVDVTEIFNQLPWEKKRRLFKLVYLISLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDH+S
Sbjct: 121 FLSIFWLIYSALEDHDS 137

[Close]

BLAST of Carg16684 vs. ExPASy TrEMBL
Match: A0A0A0KMS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157960 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.9e-64
Identity = 126/137 (91.97%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           MADIYVWLLSFF IIALL+LVVFQLMCLADLEFDYINPYDSSSRINKVV+PEFITQGVLC
Sbjct: 1   MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           IFYLL+GHW+MSL C+P LYYN+R+YTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSL+
Sbjct: 61  IFYLLSGHWVMSLLCMPCLYYNLRMYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLL 120

Query: 121 FLSIFWLIYSALEDHES 138
           FLSIFWLIYSALEDHES
Sbjct: 121 FLSIFWLIYSALEDHES 137

[Close]

BLAST of Carg16684 vs. TAIR 10
Match: AT1G12390.1 (Cornichon family protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.7e-54
Identity = 98/136 (72.06%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           M DI+ WL+SFF +IAL+ ++V+QL+CLADLEFDYINPYDS+SRIN VV+PEFI QGVLC
Sbjct: 1   MGDIWTWLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           +FYLLTGHW M+L C+PYLYYN  LY++R+HLVDVTEIFN L WEKK+RLFKL Y+V  +
Sbjct: 61  VFYLLTGHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNL 120

Query: 121 FLSIFWLIYSALEDHE 137
           FL+IFW+IYSAL+D+E
Sbjct: 121 FLTIFWMIYSALDDYE 136

[Close]

BLAST of Carg16684 vs. TAIR 10
Match: AT1G62880.1 (Cornichon family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-49
Identity = 90/136 (66.18%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           M +++ W++SF I+I LL L+V+QL+ LADLEFDYINPYDS+SRIN VV+PE I QG LC
Sbjct: 1   MGEVWTWIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           +FYL+TGHW M+L CVPYLYYN  LY++++HL+DVTEIFN L WEKK+RLFKL Y++  +
Sbjct: 61  VFYLVTGHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTL 120

Query: 121 FLSIFWLIYSALEDHE 137
           FL+IFWLIYS L+D+E
Sbjct: 121 FLTIFWLIYSTLDDYE 136

[Close]

BLAST of Carg16684 vs. TAIR 10
Match: AT1G12340.1 (Cornichon family protein )

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-48
Identity = 86/115 (74.78%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 22  VFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLCIFYLLTGHWIMSLFCVPYLYY 81
           +F L+CLADLEFDYINPYDS+SRIN VV+PEFI QGVLC+FYLLTGHW M+L C+PYLYY
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 82  NIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLIFLSIFWLIYSALEDHE 137
           N  LY++R+HLVDVTEIFN L WEKK+RLFKL Y+V  +FL+IFW+IYSAL+D+E
Sbjct: 74  NFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYE 128

[Close]

BLAST of Carg16684 vs. TAIR 10
Match: AT4G12090.1 (Cornichon family protein )

HSP 1 Score: 160.6 bits (405), Expect = 8.9e-40
Identity = 73/134 (54.48%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MADIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLC 60
           M D+  W++SF  +  L+I+V++QL CLADLEFD INPYD SSRIN++V+PEF  QG+LC
Sbjct: 1   MGDLLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLC 60

Query: 61  IFYLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLI 120
           ++Y+LTGHW M++  +P+L+YNIRLY +R+HL DVTE++N   WE+K+R++K+ ++   I
Sbjct: 61  LYYILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSI 120

Query: 121 FLSIFWLIYSALED 135
           F++ +WLI+SAL D
Sbjct: 121 FITTYWLIHSALGD 134

[Close]

BLAST of Carg16684 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 63/138 (45.65%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 3   DIYVWLLSFFIIIALLILVVFQLMCLADLEFDYINPYDSSSRINKVVMPEFITQGVLCIF 62
           D+++W++SFF+ +AL+  V +Q++CL DLE DY+NP+++S+RIN++V+PEFI QG LC+ 
Sbjct: 4   DLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLL 63

Query: 63  YLLTGHWIMSLFCVPYLYYNIRLYTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLIFL 122
           +LLT HW+  L  VP   Y+  LY +R++L+DVTE+F  + +EKK R  KL + V L  +
Sbjct: 64  FLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIM 123

Query: 123 SIFWL----IYSALEDHE 137
            +F L    +YS  ED +
Sbjct: 124 VVFRLTLSAVYSFTEDDD 141

The following BLAST results are available for this feature:

BLAST of Carg16684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922295.1	4.2e-68	100.00	protein cornichon homolog 4-like [Cucurbita moschata] >XP_023551139.1 protein co...	[more]
XP_022969840.1	2.3e-66	97.81	protein cornichon homolog 4-like [Cucurbita maxima]	[more]
XP_038907022.1	6.8e-66	94.16	protein cornichon homolog 4-like [Benincasa hispida]	[more]
XP_023532889.1	2.6e-65	94.16	protein cornichon homolog 4-like [Cucurbita pepo subsp. pepo] >XP_023532890.1 pr...	[more]
XP_022996131.1	5.7e-65	93.43	protein cornichon homolog 4-like [Cucurbita maxima] >XP_022996132.1 protein corn...	[more]

BLAST of Carg16684 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84W04	5.2e-53	72.06	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
Q8GWT5	1.7e-48	66.18	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
Q3EDD7	1.9e-47	74.78	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
Q9SZ74	1.2e-38	54.48	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]
Q9C7D7	1.5e-28	45.65	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of Carg16684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8A9	2.1e-68	100.00	protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111430316 P...	[more]
A0A6J1I130	1.1e-66	97.81	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111468923 PE=...	[more]
A0A6J1K131	2.8e-65	93.43	protein cornichon homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491445 PE=...	[more]
A0A6J1H2W0	3.6e-65	93.43	protein cornichon homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459200 P...	[more]
A0A0A0KMS0	8.9e-64	91.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157960 PE=3 SV=1	[more]

BLAST of Carg16684 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12390.1	3.7e-54	72.06	Cornichon family protein	[more]
AT1G62880.1	1.2e-49	66.18	Cornichon family protein	[more]
AT1G12340.1	1.4e-48	74.78	Cornichon family protein	[more]
AT4G12090.1	8.9e-40	54.48	Cornichon family protein	[more]
AT3G12180.1	1.1e-29	45.65	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 4..125 e-value: 5.4E-61 score: 218.6
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 6..125 e-value: 1.7E-43 score: 147.8
None	No IPR available	PANTHER	PTHR12290:SF39	PROTEIN CORNICHON HOMOLOG 4-LIKE	coord: 1..135
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16684-RA	Carg16684-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane