Carg01629 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01629
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	tRNA pseudouridine(38/39) synthase isoform X1
Location	Carg_Chr15: 2859493 .. 2860026 (-)
RNA-Seq Expression	Carg01629
Synteny	Carg01629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGAGCGGAACATTCCCTCGATTACAGAGGAGGTACGGGAGCAATGGAAACGACCTCAGGAACTGACGAGTTTCAACCCTTCGATGGAAACCTAATTGGAAATCTTCAATCCCAGCTTCGTCTTCTCCAAGGCAGGGTTAAGGTTTGAATGTCTACCCTCATTTCAACTTCCGGTTGATTAATGACATAATGGAGAAGAATCGGTAAAGGCATGACTGATGTTCGATCTCAATCCATTAATCTGTCAGGAATTAGAGGAGGAAAATTCGAATCTATCCTCTCGACTTGCAAGTTGCTGCTGTTCTGAGGTTTGGTCGACTATGTTAGAATGAAATCAGAGCTATTTGGTTGTCATGCTAGCCCAGCTAACCTTAGGGTAGATTTTTCGTCAGGGCTAACTAAACATGAATTCGTGCAGAGGAGGATGAACTTTGACGATGGGAGTAGTTCGATTGAGAAAAGCAAGAAATATGGAAGTCTGAAAGACAAGACTACTAAGAAGAAAGCAGTAGAAAAAACGCCAGGCTAG

mRNA sequence

ATGGACGGAGCGGAACATTCCCTCGATTACAGAGGAGGTACGGGAGCAATGGAAACGACCTCAGGAACTGACGAGTTTCAACCCTTCGATGGAAACCTAATTGGAAATCTTCAATCCCAGCTTCGTCTTCTCCAAGGCAGGGTTAAGGAATTAGAGGAGGAAAATTCGAATCTATCCTCTCGACTTGCAAGTTGCTGCTGTTCTGAGAGGAGGATGAACTTTGACGATGGGAGTAGTTCGATTGAGAAAAGCAAGAAATATGGAAGTCTGAAAGACAAGACTACTAAGAAGAAAGCAGTAGAAAAAACGCCAGGCTAG

Coding sequence (CDS)

ATGGACGGAGCGGAACATTCCCTCGATTACAGAGGAGGTACGGGAGCAATGGAAACGACCTCAGGAACTGACGAGTTTCAACCCTTCGATGGAAACCTAATTGGAAATCTTCAATCCCAGCTTCGTCTTCTCCAAGGCAGGGTTAAGGAATTAGAGGAGGAAAATTCGAATCTATCCTCTCGACTTGCAAGTTGCTGCTGTTCTGAGAGGAGGATGAACTTTGACGATGGGAGTAGTTCGATTGAGAAAAGCAAGAAATATGGAAGTCTGAAAGACAAGACTACTAAGAAGAAAGCAGTAGAAAAAACGCCAGGCTAG

Protein sequence

MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSSRLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG

Homology

[Close]

BLAST of Carg01629 vs. NCBI nr
Match: KAG6578858.1 (putative F-actin-capping protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS
Sbjct: 20  MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 79

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG
Sbjct: 80  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 124

[Close]

BLAST of Carg01629 vs. NCBI nr
Match: KAG7016392.1 (hypothetical protein SDJN02_21501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG
Sbjct: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. NCBI nr
Match: XP_023551060.1 (tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551061.1 tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-49
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLS+
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLST 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLA+CCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. NCBI nr
Match: XP_023551064.1 (tRNA pseudouridine(38/39) synthase isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-49
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLS+
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLST 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLA+CCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. NCBI nr
Match: XP_022938732.1 (tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita moschata] >XP_022938734.1 tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita moschata])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQS+LRLLQGRVK LEEENSNLSS
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSRLRLLQGRVKVLEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLA+CCCSERRMNFDDGSSSIEKS+KYGSLKDKTTKKKAVEKTPG
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSRKYGSLKDKTTKKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. ExPASy TrEMBL
Match: A0A6J1FEX0 (tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444871 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.0e-48
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQS+LRLLQGRVK LEEENSNLSS
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSRLRLLQGRVKVLEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLA+CCCSERRMNFDDGSSSIEKS+KYGSLKDKTTKKKAVEKTPG
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSRKYGSLKDKTTKKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. ExPASy TrEMBL
Match: A0A6J1FEX6 (tRNA pseudouridine(38/39) synthase isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111444871 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.0e-48
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQS+LRLLQGRVK LEEENSNLSS
Sbjct: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSRLRLLQGRVKVLEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLA+CCCSERRMNFDDGSSSIEKS+KYGSLKDKTTKKKAVEKTPG
Sbjct: 61  RLATCCCSERRMNFDDGSSSIEKSRKYGSLKDKTTKKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. ExPASy TrEMBL
Match: A0A6J1JWD4 (tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488950 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.1e-45
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLD+RG TGAMETTSGTDEFQPFD NLI NLQSQLRLLQGRVKELEEENSNLSS
Sbjct: 1   MDGAEHSLDHRGATGAMETTSGTDEFQPFDRNLIENLQSQLRLLQGRVKELEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLASC CSERRMNFDDGSSSIEKSKKYGSLKDKTT+KKAVEKTPG
Sbjct: 61  RLASCYCSERRMNFDDGSSSIEKSKKYGSLKDKTTEKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. ExPASy TrEMBL
Match: A0A6J1JU85 (tRNA pseudouridine(38/39) synthase isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111488950 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.1e-45
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLD+RG TGAMETTSGTDEFQPFD NLI NLQSQLRLLQGRVKELEEENSNLSS
Sbjct: 1   MDGAEHSLDHRGATGAMETTSGTDEFQPFDRNLIENLQSQLRLLQGRVKELEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLASC CSERRMNFDDGSSSIEKSKKYGSLKDKTT+KKAVEKTPG
Sbjct: 61  RLASCYCSERRMNFDDGSSSIEKSKKYGSLKDKTTEKKAVEKTPG 105

[Close]

BLAST of Carg01629 vs. ExPASy TrEMBL
Match: A0A6J1JQK1 (tRNA pseudouridine(38/39) synthase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488950 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.6e-44
Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 1   MDGAEHSLDYRGGTGAMETTSGTDEFQPFDGNLIGNLQSQLRLLQGRVKELEEENSNLSS 60
           MDGAEHSLD+RG TGAMETTSGTDEFQPFD NLI NLQSQLRLLQGRVK LEEENSNLSS
Sbjct: 1   MDGAEHSLDHRGATGAMETTSGTDEFQPFDRNLIENLQSQLRLLQGRVKVLEEENSNLSS 60

Query: 61  RLASCCCSERRMNFDDGSSSIEKSKKYGSLKDKTTKKKAVEKTPG 106
           RLASC CSERRMNFDDGSSSIEKSKKYGSLKDKTT+KKAVEKTPG
Sbjct: 61  RLASCYCSERRMNFDDGSSSIEKSKKYGSLKDKTTEKKAVEKTPG 105

The following BLAST results are available for this feature:

BLAST of Carg01629 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578858.1	2.0e-49	100.00	putative F-actin-capping protein subunit beta, partial [Cucurbita argyrosperma s...	[more]
KAG7016392.1	2.0e-49	100.00	hypothetical protein SDJN02_21501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023551060.1	9.8e-49	98.10	tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_023551064.1	9.8e-49	98.10	tRNA pseudouridine(38/39) synthase isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022938732.1	1.9e-47	96.19	tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita moschata] >XP_022938734...	[more]

BLAST of Carg01629 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEX0	9.0e-48	96.19	tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FEX6	9.0e-48	96.19	tRNA pseudouridine(38/39) synthase isoform X3 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JWD4	7.1e-45	94.29	tRNA pseudouridine(38/39) synthase isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JU85	7.1e-45	94.29	tRNA pseudouridine(38/39) synthase isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1JQK1	4.6e-44	93.33	tRNA pseudouridine(38/39) synthase isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Carg01629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01629-RA	Carg01629-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0008033	tRNA processing
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding