Carg01388 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01388
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SENSITIVITY TO RED LIGHT REDUCED 1
Location	Carg_Chr15: 4346965 .. 4348345 (+)
RNA-Seq Expression	Carg01388
Synteny	Carg01388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAATAAGAACACACACGGCTCCTCTTAATTGGTAACCTGCAAAAGCTAGAGATGCAGACGGCCGTGCAACCATGAACCAGCAGTAGAATCGAATCCGCTGTGTTGTCCAGTCAGGAAAGAGAAGAATCGAAAACCAATCAGGTTTGTGACTCAAAATCCCTTTAATTTCATCGCCATTCTCCGACTCGAATTTGTTCCGTTCATGTGTTTTGGTTACTGATTTTGATATCATTCCACTGGATCTTGTTCTTCATATTCCTTCTTTTTTTTTTTTCCTTTCCACATACAGTTTTGTGCTATTGATTCAATTTGGCGATCTTTTGATTGAATGCAAGCTAATGTACCCTGAATCTGAGCTTTAGTGTTCACTGTTTCCTCGATTTCATTTTGTTCATACTGTCTCGCTTTCAGCAGTAGAATGAGTTCATTCACGATTTTGATGTGCTGGATTTTTTTATATTTAATGCAGAATTTTCTGCTTTCTGAAGATTCTTGAGGTTAGAAAAGAGAAGCTGTAATCAGGACTGGACGATTATCTCTTGACGGATGGCAGCGTCGGCAAAAACTCTCGCGGTTCCGGATCAGTCAAATAATGGCGACTGGACAGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAACTTTTCCGAAGCTCAGAAATCGAGAAGATCAGCGGACTTGGTCGCCCATTGATCAGGCTAATGATACAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTATTGACGAGCTTGGAACGACGCCAGTCTTGGAATCCTTAAATAGGGTTTTGGCCTCGGAATCAAAGATGGAGATGGTAATCTATGGCGTAGGAAGCATAGAGAATTACGAAAATCCTCGATTGCAGCTCAGTCTTGCAATCTTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTGGAGGTGTTCGATCCAATTCTTTCTGCAACCGAATGTCGGGTAATGGATCCTTTGGTTGTTCCGTTCTATCAGTAAATGAGGAAGGACGGCGATGTGCGCAGAAGGCAACATTGTTCTTTATGCCCCATTGCGAGGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCACGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAACAGTTTGTATCTGAATTCAAAAGCTCACCCGTTGTTGATTCAGCAAAGTACATTTTAGCCTCAAGAAAGTTCACACGCGAGATCAAAATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCACGATTCGAGTTGGCATTTTTTCAGCCCTGTTTCACCGACGGAGCTGCAATTCACAGATCTTTGA

mRNA sequence

AAGAATAAGAACACACACGGCTCCTCTTAATTGGTAACCTGCAAAAGCTAGAGATGCAGACGGCCGTGCAACCATGAACCAGCAGTAGAATCGAATCCGCTGTGTTGTCCAGTCAGGAAAGAGAAGAATCGAAAACCAATCAGAATTTTCTGCTTTCTGAAGATTCTTGAGGTTAGAAAAGAGAAGCTGTAATCAGGACTGGACGATTATCTCTTGACGGATGGCAGCGTCGGCAAAAACTCTCGCGGTTCCGGATCAGTCAAATAATGGCGACTGGACAGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAACTTTTCCGAAGCTCAGAAATCGAGAAGATCAGCGGACTTGGTCGCCCATTGATCAGGCTAATGATACAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTATTGACGAGCTTGGAACGACGCCAGTCTTGGAATCCTTAAATAGGGTTTTGGCCTCGGAATCAAAGATGGAGATGGTAATCTATGGCGTAGGAAGCATAGAGAATTACGAAAATCCTCGATTGCAGCTCAGTCTTGCAATCTTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTGGAGGTGTTCGATCCAATTCTTTCTGCAACCGAATGTCGGGAAAATTGGACGGTGGAGCTGTTGAATCACGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAACAGTTTGTATCTGAATTCAAAAGCTCACCCGTTGTTGATTCAGCAAAGTACATTTTAGCCTCAAGAAAGTTCACACGCGAGATCAAAATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCACGATTCGAGTTGGCATTTTTTCAGCCCTGTTTCACCGACGGAGCTGCAATTCACAGATCTTTGA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACTCTCGCGGTTCCGGATCAGTCAAATAATGGCGACTGGACAGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAACTTTTCCGAAGCTCAGAAATCGAGAAGATCAGCGGACTTGGTCGCCCATTGATCAGGCTAATGATACAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTATTGACGAGCTTGGAACGACGCCAGTCTTGGAATCCTTAAATAGGGTTTTGGCCTCGGAATCAAAGATGGAGATGGTAATCTATGGCGTAGGAAGCATAGAGAATTACGAAAATCCTCGATTGCAGCTCAGTCTTGCAATCTTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTGGAGGTGTTCGATCCAATTCTTTCTGCAACCGAATGTCGGGAAAATTGGACGGTGGAGCTGTTGAATCACGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAACAGTTTGTATCTGAATTCAAAAGCTCACCCGTTGTTGATTCAGCAAAGTACATTTTAGCCTCAAGAAAGTTCACACGCGAGATCAAAATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCACGATTCGAGTTGGCATTTTTTCAGCCCTGTTTCACCGACGGAGCTGCAATTCACAGATCTTTGA

Protein sequence

MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKLLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPRLQLSLAILLKRKFSWIGSLEVFDPILSATECRENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL

Homology

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BLAST of Carg01388 vs. NCBI nr
Match: KAG7016630.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 471.9 bits (1213), Expect = 3.3e-129
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRENWTVELLNHVVLFGNSFEIYEQFVSEF 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECRENWTVELLNHVVLFGNSFEIYEQFVSEF
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRENWTVELLNHVVLFGNSFEIYEQFVSEF 180

Query: 181 KSSPVVDSAKYILASRKFTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 237
           KSSPVVDSAKYILASRKFTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL
Sbjct: 181 KSSPVVDSAKYILASRKFTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 236

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BLAST of Carg01388 vs. NCBI nr
Match: KAG6579107.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449.9 bits (1156), Expect = 1.4e-122
Identity = 235/277 (84.84%), Postives = 235/277 (84.84%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSP DQANDTIRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMASFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

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BLAST of Carg01388 vs. NCBI nr
Match: XP_022939448.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939449.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939450.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939451.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939452.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata])

HSP 1 Score: 448.0 bits (1151), Expect = 5.1e-122
Identity = 234/277 (84.48%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSP DQAND IRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

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BLAST of Carg01388 vs. NCBI nr
Match: XP_023550156.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550157.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550158.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550159.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 233/277 (84.12%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSP DQANDTIRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQF+RTLIDELGTTPVLESLNR LASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFFRTLIDELGTTPVLESLNRALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

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BLAST of Carg01388 vs. NCBI nr
Match: XP_022992727.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima] >XP_022992728.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima] >XP_022992730.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima] >XP_022992731.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima] >XP_022992732.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima] >XP_022992733.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima])

HSP 1 Score: 438.7 bits (1127), Expect = 3.1e-119
Identity = 230/277 (83.03%), Postives = 231/277 (83.39%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAK LAV DQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSP DQANDTIRESKL
Sbjct: 1   MAASAKNLAVLDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQFYRTLIDELGTTPVLESLN+ LASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNKALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSILSVNEEGRRCAQKATLFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENWTVELLNHVVLFGNSFEIY QFVSEFKSSPVVDSAKYILASRKFT
Sbjct: 181 PHCEAGLYNNLLQENWTVELLNHVVLFGNSFEIYGQFVSEFKSSPVVDSAKYILASRKFT 240

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BLAST of Carg01388 vs. ExPASy Swiss-Prot
Match: Q8GWZ6 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SRR1 PE=2 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 4.9e-51
Identity = 111/267 (41.57%), Postives = 163/267 (61.05%), Query Frame = 0


Query: 10  VPDQSNNGDWTVVLP---RRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKLLQKMEI 69
           V + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L +  V   +  VL SE++++MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATE----------------------------------- 189
           IL+KR+F W+G ++EVFDP+LSATE                                   
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ------CRENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFTREIKI 232
                  + NW ++ L+ + LFGNSF++YE+ VS    + V+ + K I+A+++ T E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

[Close]

BLAST of Carg01388 vs. ExPASy TrEMBL
Match: A0A6J1FGU7 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC111445349 PE=3 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.5e-122
Identity = 234/277 (84.48%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSP DQAND IRESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

[Close]

BLAST of Carg01388 vs. ExPASy TrEMBL
Match: A0A6J1JWJ0 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111488981 PE=3 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 230/277 (83.03%), Postives = 231/277 (83.39%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAK LAV DQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSP DQANDTIRESKL
Sbjct: 1   MAASAKNLAVLDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKKVESSQFYRTLIDELGTTPVLESLN+ LASESKMEMVIYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNKALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWIGSLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSILSVNEEGRRCAQKATLFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENWTVELLNHVVLFGNSFEIY QFVSEFKSSPVVDSAKYILASRKFT
Sbjct: 181 PHCEAGLYNNLLQENWTVELLNHVVLFGNSFEIYGQFVSEFKSSPVVDSAKYILASRKFT 240

[Close]

BLAST of Carg01388 vs. ExPASy TrEMBL
Match: A0A5A7VEC7 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00470 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.1e-109
Identity = 207/277 (74.73%), Postives = 223/277 (80.51%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKT+A+PDQSNNGDWTVVLPRRG+QRK FPKLRNREDQRTWSP DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKME+CIKK+ESSQFYRTL++EL T P LESLNRVL SESKM +VIYGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENW V+LLNH++LFGNSFEIYEQFVSEFK+SPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

[Close]

BLAST of Carg01388 vs. ExPASy TrEMBL
Match: A0A1S3CQQ4 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo OX=3656 GN=LOC103503243 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.1e-109
Identity = 207/277 (74.73%), Postives = 223/277 (80.51%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKT+A+PDQSNNGDWTVVLPRRG+QRK FPKLRNREDQRTWSP DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKME+CIKK+ESSQFYRTL++EL T P LESLNRVL SESKM +VIYGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR                            
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENW V+LLNH++LFGNSFEIYEQFVSEFK+SPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

[Close]

BLAST of Carg01388 vs. ExPASy TrEMBL
Match: A0A0A0KRU2 (SRR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G457240 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.3e-107
Identity = 205/277 (74.01%), Postives = 222/277 (80.14%), Query Frame = 0


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKL 60
           MAASAKT+++PDQSN+GDWTVVLPRRG+Q+KTFPKLR REDQRTWSP DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKK+E+SQFY+TL++EL T P LESLNRVL SESKM MV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECR---------------------------- 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR                            
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 -------------ENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 237
                        ENW V LLNH+VLFGNSFEIYEQFVSEFK+SPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

[Close]

BLAST of Carg01388 vs. TAIR 10
Match: AT5G59560.1 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 202.6 bits (514), Expect = 3.5e-52
Identity = 111/267 (41.57%), Postives = 163/267 (61.05%), Query Frame = 0


Query: 10  VPDQSNNGDWTVVLP---RRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKLLQKMEI 69
           V + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L +  V   +  VL SE++++MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATE----------------------------------- 189
           IL+KR+F W+G ++EVFDP+LSATE                                   
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ------CRENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFTREIKI 232
                  + NW ++ L+ + LFGNSF++YE+ VS    + V+ + K I+A+++ T E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

[Close]

BLAST of Carg01388 vs. TAIR 10
Match: AT5G59560.2 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 202.6 bits (514), Expect = 3.5e-52
Identity = 111/267 (41.57%), Postives = 163/267 (61.05%), Query Frame = 0


Query: 10  VPDQSNNGDWTVVLP---RRGRQRKTFPKLRNREDQRTWSPIDQANDTIRESKLLQKMEI 69
           V + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L +  V   +  VL SE++++MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATE----------------------------------- 189
           IL+KR+F W+G ++EVFDP+LSATE                                   
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ------CRENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFTREIKI 232
                  + NW ++ L+ + LFGNSF++YE+ VS    + V+ + K I+A+++ T E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

The following BLAST results are available for this feature:

BLAST of Carg01388 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016630.1	3.3e-129	100.00	Protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579107.1	1.4e-122	84.84	Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subs...	[more]
XP_022939448.1	5.1e-122	84.48	protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939449.1 ...	[more]
XP_023550156.1	1.1e-121	84.12	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022992727.1	3.1e-119	83.03	protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita maxima] >XP_022992728.1 pr...	[more]

BLAST of Carg01388 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWZ6	4.9e-51	41.57	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]

BLAST of Carg01388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGU7	2.5e-122	84.48	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JWJ0	1.5e-119	83.03	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7VEC7	4.1e-109	74.73	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CQQ4	4.1e-109	74.73	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo OX=3656 GN=LOC1035032...	[more]
A0A0A0KRU2	2.3e-107	74.01	SRR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G457240 PE=3 S...	[more]

BLAST of Carg01388 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59560.1	3.5e-52	41.57	sensitivity to red light reduced protein (SRR1)	[more]
AT5G59560.2	3.5e-52	41.57	sensitivity to red light reduced protein (SRR1)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	SRR1-like domain	PFAM	PF07985	SRR1	coord: 105..151 e-value: 5.2E-9 score: 36.0
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 153..225 coord: 14..152
IPR040044	SRR1-like protein	PANTHER	PTHR28626	SRR1-LIKE PROTEIN	coord: 153..225 coord: 14..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01388-RA	Carg01388-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus