CaUC06G117940 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G117940
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 22518002 .. 22518608 (+)
RNA-Seq ExpressionCaUC06G117940
SyntenyCaUC06G117940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTGGTTTTATTTAGATTCTCATGCTCTGAGGATGGTTGGGTAAACAGGTTTGCTCAATCTGTGTGTGGCAGCAGATAGCAATTGGTTACTGCTTCTGTTGCCCTTTTGTTCTTCCCAACGGAAAGAAAGATGGAGGTTGTTCCTTGCTGCCTTTATCATGTGTTCCATTGATTCGATCGATTCTGGTTCGAATCTTGTAATTTATTGGACCTCGAGTCATTTAATGTCTTTCTTTGGCAGCCCCTCGTACTCTCTACATATGTTGCTGCAATTTCAACTTAGTTTCTATATATATATATATATATATATAATATTCAACTTTCAATAAAAATTACTTTGATTTCTCAGGGGAAGTGTTAAATTCAATCAAAGGCTCTTGGACCAACCATCTCCTATGCCAGCCAAATGGATATCCAACCTCAAAGAAACAAACCCAAAAAGAGGTTCCATCATTACTGCTAAACTACTAGCTTGATATGATTGAAAAAGTAAACTCACATATCAAATATAATTCATATCGCAACTCTAAGCTGTATGAATGCAGTCAATTAGCCAAATTTGCATCTAAGGTGTATGAAAGTGAAGCGAGATAAACTACTAG

mRNA sequence

ATGTATGTGATAGCAATTGGTTACTGCTTCTGTTGCCCTTTTGTTCTTCCCAACGGAAAGAAAGATGGAGGTTGTTCCTTGCTGCCTTTATCATGTGTTCCATTGATTCGATCGATTCTGGTTCGAATCTTGGGAAGTGTTAAATTCAATCAAAGGCTCTTGGACCAACCATCTCCTATGCCAGCCAAATGGATATCCAACCTCAAAGAAACAAACCCAAAAAGAGGTTCCATCATTACTGCTAAACTACTAGCTTGATATGATTGAAAAAGTAAACTCACATATCAAATATAATTCATATCGCAACTCTAAGCTGTATGAATGCAGTCAATTAGCCAAATTTGCATCTAAGGTGTATGAAAGTGAAGCGAGATAAACTACTAG

Coding sequence (CDS)

ATGTATGTGATAGCAATTGGTTACTGCTTCTGTTGCCCTTTTGTTCTTCCCAACGGAAAGAAAGATGGAGGTTGTTCCTTGCTGCCTTTATCATGTGTTCCATTGATTCGATCGATTCTGGTTCGAATCTTGGGAAGTGTTAAATTCAATCAAAGGCTCTTGGACCAACCATCTCCTATGCCAGCCAAATGGATATCCAACCTCAAAGAAACAAACCCAAAAAGAGGTTCCATCATTACTGCTAAACTACTAGCTTGA

Protein sequence

MYVIAIGYCFCCPFVLPNGKKDGGCSLLPLSCVPLIRSILVRILGSVKFNQRLLDQPSPMPAKWISNLKETNPKRGSIITAKLLA
Homology
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BLAST of CaUC06G117940 vs. NCBI nr
Match: XP_031736140.1 (uncharacterized protein LOC116401768 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 4.6e-12
Identity = 50/121 (41.32%), Postives = 55/121 (45.45%), Query Frame = 0 

Query: 4   IAIGYCFCCPFVLPNGKKDGGCSLLPLSCVPLI-----------------------RSIL 63
           I IGYCFCCPFVLPNGKKDGGC +LPLSCVPLI                        S  
Sbjct: 16  IVIGYCFCCPFVLPNGKKDGGCFMLPLSCVPLILVRFWFESCNLLDLESFNAFLWQPSYS 75

Query: 64  VRIL--------------------------GSVKFNQRLLDQPSPMPAKWISNLKETNPK 76
           +RIL                          GS KFNQ LLD PS M  KW+   +  + K
Sbjct: 76  LRILLQFQLSFSLYLSIYIQLSIKITLISQGSCKFNQMLLDHPSSMTTKWMWLQRNKHKK 135

The following BLAST results are available for this feature:
BLAST of CaUC06G117940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031736140.14.6e-1241.32uncharacterized protein LOC116401768 [Cucumis sativus][more]
BLAST of CaUC06G117940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G117940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G117940 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G117940.1CaUC06G117940.1mRNA