CaUC06G117750 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G117750
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 22290111 .. 22291170 (-)
RNA-Seq ExpressionCaUC06G117750
SyntenyCaUC06G117750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATGAGATCATAGTCGTCCACGAGATCACATTGCGGTCCTTGATTAACTTGAAGACTGCCTTTGCATCTTCAATGATCTCACACTTGGAGTACATCGAGATCAGAACATTACCGACAGAAGTATGGGTTTCATATCCTGTTTTCACAGTCAAACAATGGATCTGTTTTCCAAGCTCCAGGTTTCTTTCATGACCACAGACAGAAAGTGCTGCAGTAATTGGCACATTGTCAAACTTCACTCCTTCTCTCACCATTTGAATGAACACCAAAATAGCTTCTAACCCATGATCTCCCTCTTGTGCATAACCAGTAATCATCGCGCTCCAGGACACCCGATCTCGGCTCTGCATTTCATCGAACACTTGTCTAGCATCCACAAGATGTTCCCATCTCGAGTACATTGTAACCAGAGCATTTCCAACAAAAACATCACCTTTGAATCCACATTTCAGGGCAAGAGTATGCAATTGCCAACCAAAAAGAAAATCTTCTCCATCTAAGCAGAAGGCAAGTGTGGTAGTATAAGTCACAGAATCAAACTCAACCCCATTTAAATTCATCCTAACAGCAAAATTCAAAGCGTTCTCACTCTTCTGGAACCCGGAAAGAATAGTGTTCCACGAAACAATATCTGGGTCATGTAAATTCTCGAAGACACTAAAAGCCTTCTCAAGCTGCCCAGATTTACAGTACATATTCATTAAAGAGTTAGAGACTGTAATATGGGAAGCAAGCCCAGAAGAAATAACCAATCCATGAATTTGTCTGCCTAGGTTAGGAAGCCCACAACAGGCCTTCAGAGCAAGGGCCAAAGTGAACTCATCGGCACTCCCATCAAGACCCCACCGAATTTGCTTCTTGAAAAAGCGAAGGGATTGAAATGCCTCGTCTCTGTGCAAGTAATTGAGCAAAACGCGGTTGACAGAGGCTGCATTTGGAGGAGGACTTTGATCAAACAGGTTGTAGTCATGTTGGAAAGAGCGGAAAAAATTGAAGCTTGGGAACCGTTGATTGGATTTGAAATTCAGATGGCGGGTAAGCATGAGAACAAAGGTAGT

mRNA sequence

ACAATGAGATCATAGTCGTCCACGAGATCACATTGCGGTCCTTGATTAACTTGAAGACTGCCTTTGCATCTTCAATGATCTCACACTTGGAGTACATCGAGATCAGAACATTACCGACAGAATCAAACAATGGATCTGTTTTCCAAGCTCCAGGTTTCTTTCATGACCACAGACAGAAAGTGCTGCATAATCATCGCGCTCCAGGACACCCGATCTCGGCTCTGCATTTCATCGAACACTTGTCTAGCATCCACAAGATGTTCCCATCTCGAGTACATTGTAACCAGAGCATTTCCAACAAAAACATCACCTTTGAATCCACATTTCAGGGCAAGAAATCAAACTCAACCCCATTTAAATTCATCCTAACAGCAAAATTCAAAGCGTTCTCACTCTTCTGGAACCCGGAAAGAATAGTGTTCCACGAAACAATATCTGGGTCATGTAAATTCTCGAAGACACTAAAAGCCTTCTCAAGCTGCCCAGATTTACAGTACATATTCATTAAAGAGTTAGAGACTGTTAGGAAGCCCACAACAGGCCTTCAGAGCAAGGGCCAAAGTGAACTCATCGGCACTCCCATCAAGACCCCACCGAATTTGCTTCTTGAAAAAGCGAAGGGATTGAAATGCCTCGTCTCTGTGCAAGTAATTGAGCAAAACGCGGTTGACAGAGGCTGCATTTGGAGGAGGACTTTGATCAAACAGGTTGTAGTCATGTTGGAAAGAGCGGAAAAAATTGAAGCTTGGGAACCGTTGATTGGATTTGAAATTCAGATGGCGGGTAAGCATGAGAACAAAGGTAGT

Coding sequence (CDS)

ATGATCTCACACTTGGAGTACATCGAGATCAGAACATTACCGACAGAATCAAACAATGGATCTGTTTTCCAAGCTCCAGGTTTCTTTCATGACCACAGACAGAAAGTGCTGCATAATCATCGCGCTCCAGGACACCCGATCTCGGCTCTGCATTTCATCGAACACTTGTCTAGCATCCACAAGATGTTCCCATCTCGAGTACATTGTAACCAGAGCATTTCCAACAAAAACATCACCTTTGAATCCACATTTCAGGGCAAGAAATCAAACTCAACCCCATTTAAATTCATCCTAACAGCAAAATTCAAAGCGTTCTCACTCTTCTGGAACCCGGAAAGAATAGTGTTCCACGAAACAATATCTGGGTCATGTAAATTCTCGAAGACACTAAAAGCCTTCTCAAGCTGCCCAGATTTACAGTACATATTCATTAAAGAGTTAGAGACTGTTAGGAAGCCCACAACAGGCCTTCAGAGCAAGGGCCAAAGTGAACTCATCGGCACTCCCATCAAGACCCCACCGAATTTGCTTCTTGAAAAAGCGAAGGGATTGAAATGCCTCGTCTCTGTGCAAGTAATTGAGCAAAACGCGGTTGACAGAGGCTGCATTTGGAGGAGGACTTTGATCAAACAGGTTGTAGTCATGTTGGAAAGAGCGGAAAAAATTGAAGCTTGGGAACCGTTGATTGGATTTGAAATTCAGATGGCGGGTAAGCATGAGAACAAAGGTAGT

Protein sequence

MISHLEYIEIRTLPTESNNGSVFQAPGFFHDHRQKVLHNHRAPGHPISALHFIEHLSSIHKMFPSRVHCNQSISNKNITFESTFQGKKSNSTPFKFILTAKFKAFSLFWNPERIVFHETISGSCKFSKTLKAFSSCPDLQYIFIKELETVRKPTTGLQSKGQSELIGTPIKTPPNLLLEKAKGLKCLVSVQVIEQNAVDRGCIWRRTLIKQVVVMLERAEKIEAWEPLIGFEIQMAGKHENKGS
Homology
[Close]
BLAST of CaUC06G117750 vs. ExPASy TrEMBL
Match: A0A0A0LTR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G320870 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 108/184 (58.70%), Postives = 116/184 (63.04%), Query Frame = 0 

Query: 62  MFPSRVHCNQSISNKNITFESTFQGKKSNSTPFKFILTAKFKAFSLFWNPERIVFHETIS 121
           MFPS +HCNQSISNKNITFESTFQGK             K KAFSLF NPERIVFHETIS
Sbjct: 1   MFPSPIHCNQSISNKNITFESTFQGK------------TKLKAFSLFSNPERIVFHETIS 60

Query: 122 GSCKFSKTLKAFSSCPDLQYIFIKELETVRKPTTGLQSKGQSELIGTPIKTPPNLLLEKA 181
           GSCKFS TLKA SS PDLQ           KP TG QSK QSELIG  IKTP  ++L+K 
Sbjct: 61  GSCKFSNTLKALSSSPDLQ-----------KPATGFQSKNQSELIGITIKTPLKIVLKKV 120

Query: 182 KGLKCLVSVQVIEQNAVDRGCIWRRTLIKQVVVMLERAEKIEAWEPLI-----GFEIQMA 241
           KGLKC  S QVI+QNAV+RG        +           +E WE L      GFEIQMA
Sbjct: 121 KGLKC-SSGQVIDQNAVERGWHLEEEFDE------TGCGHVETWESLFGFDMKGFEIQMA 154

The following BLAST results are available for this feature:
BLAST of CaUC06G117750 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G117750 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G117750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTR71.3e-4158.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G320870 PE=4 SV=1[more]
BLAST of CaUC06G117750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G117750.1CaUC06G117750.1mRNA